M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19560

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19560 809 16.85 Mlig455_064210

Neo: Int S/G2/M

Age: -

 LARS Mlig455_064210 {REF} {Length: 4546} {TRANSSPLICED} {Pfam: tRNA synthetases class I (I, L, M and V) [PF00133.24, score=125.1]; tRNA synthetases class I (M) [PF09334.13, score=60.1]; Anticodon-binding domain of tRNA ligase [PF08264.15, score=36.1]; tRNA synthetases class I (C) catalytic domain [PF01406.21, score=30.8]} {Human: ENSG00000133706, LARS, leucyl-tRNA synthetase, [RH, Score=1205, Expect=0.0]} {Mouse: ENSMUSG00000024493, Lars, leucyl-tRNA synthetase, [RH, Score=1222, Expect=0.0]} {Dmel: FBgn0284253, LeuRS, Leucyl-tRNA synthetase, [RH, Score=1149, Expect=0.0]} {Celegans: WBGene00003073, lars-1, Leucine--tRNA ligase, [RH, Score=1089, Expect=0.0]} {Smed: dd_Smed_v6_2849_0_1, dd_Smed_v6_2849_0_1, [RH, Score=1112, Expect=0.0]} {RNA1509_13969, RNA1509_22279, RNA1509_2311} {RNA1310_108.1, RNA1509_13969, RNA1509_22279, RNA1509_2311} {RNA1509_13969, RNA1509_22279, RNA1509_2311, RNA815_883}

Cumulative graph for MligTC455_19560

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.605 4.412 0.14431 0.75627
RegionR2 1.37 4.412 0.02417 0.17299
RegionR3 0.574 4.412 0.23216 0.77434
RegionR4 -1.095 4.412 0.05813 0.21337
RegionR5 0.102 4.412 0.82190 1.00000
RegionR6 0.113 4.412 0.81770 1.00000
RegionR7 0.168 4.412 0.75461 1.00000
RegionR8 0.372 4.412 0.56200 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.133 4.412 0.32775 1.00000
RegenerationR2 0.07 4.412 0.89989 1.00000
RegenerationR3 0.335 4.412 0.59946 0.90769
RegenerationR4 0.705 4.412 0.28564 0.73050
RegenerationR5 0.192 4.412 0.74462 0.97028
RegenerationR6 1.525 4.412 0.01257 0.13811
RegenerationBL 0.384 4.412 0.56368 0.91807
RegenerationTP -0.181 4.412 0.80746 1.00000


Genes with expression patterns similar to MligTC455_19560

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19560 809 16.85 Mlig455_064210

Neo: Int S/G2/M

Age: -

 LARS 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_064210 {REF} {Length: 4546} {TRANSSPLICED} {Pfam: tRNA synthetases class I (I, L, M and V) [PF00133.24, score=125.1]; tRNA synthetases class I (M) [PF09334.13, score=60.1]; Anticodon-binding domain of tRNA ligase [PF08264.15, score=36.1]; tRNA synthetases class I (C) catalytic domain [PF01406.21, score=30.8]} {Human: ENSG00000133706, LARS, leucyl-tRNA synthetase, [RH, Score=1205, Expect=0.0]} {Mouse: ENSMUSG00000024493, Lars, leucyl-tRNA synthetase, [RH, Score=1222, Expect=0.0]} {Dmel: FBgn0284253, LeuRS, Leucyl-tRNA synthetase, [RH, Score=1149, Expect=0.0]} {Celegans: WBGene00003073, lars-1, Leucine--tRNA ligase, [RH, Score=1089, Expect=0.0]} {Smed: dd_Smed_v6_2849_0_1, dd_Smed_v6_2849_0_1, [RH, Score=1112, Expect=0.0]} {RNA1509_13969, RNA1509_22279, RNA1509_2311} {RNA1310_108.1, RNA1509_13969, RNA1509_22279, RNA1509_2311} {RNA1509_13969, RNA1509_22279, RNA1509_2311, RNA815_883}
2. MligTC455_51076 304 6.33 Mlig455_060575

Neo: -

Age: Down-Down-Up

 ARFGEF3 1.778 0.814 - - - - 0.964 Mlig455_060575 {REF} {Length: 7036} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF1981) [PF09324.12, score=27.7]} {Human: ENSG00000112379, ARFGEF3, ARFGEF family member 3, [RH, Score=316, Expect=5e-87]} {Mouse: ENSMUSG00000019852, Arfgef3, ARFGEF family member 3, [Score=290, Expect=6e-79]} {Dmel: FBgn0029834, CG5937, [Score=243, Expect=1e-64]} {Celegans: WBGene00012386, agef-1, Arf-1 Guanine nucleotide Exchange Factor homolog, [Score=73.6, Expect=1e-12]} {Smed: dd_Smed_v6_5314_0_2, dd_Smed_v6_5314_0_2, [Score=69.7, Expect=1e-11]} {RNA1509_14718} {RNA1310_5931} {RNA815_20733}
3. MligTC455_40893 415 8.64 Mlig455_013773

Neo: -

Age: -

 ELAC2 1.757 0.805 - - - - 0.952 Mlig455_013773 {REF} {Length: 4282} {TRANSSPLICED} {Pfam: Beta-lactamase superfamily domain [PF12706.9, score=63.8]; tRNase Z endonuclease [PF13691.8, score=38.9]} {Human: ENSG00000006744, ELAC2, elaC ribonuclease Z 2, [RH, Score=250, Expect=1e-70]} {Mouse: ENSMUSG00000020549, Elac2, elaC ribonuclease Z 2, [RH, Score=246, Expect=6e-69]} {Dmel: FBgn0028426, JhI-1, Juvenile hormone-inducible protein 1, [RH, Score=263, Expect=6e-76]} {Celegans: WBGene00001983, hoe-1, Ribonuclease Z, [RH, Score=237, Expect=3e-66]} {Smed: dd_Smed_v6_8992_0_1, dd_Smed_v6_8992_0_1, [RH, Score=180, Expect=3e-47]} {RNA1509_34865, RNA1509_55497, RNA1509_8178} {RNA1310_6946.1, RNA1509_34865, RNA1509_55497, RNA1509_8178} {RNA1509_34865, RNA1509_55497, RNA1509_8178, RNA815_2077}
4. MligTC455_32811 764 15.92 Mlig455_026793, Mlig455_051806

Neo: -

Age: -

 RAB43 1.753 - - 0.955 - 0.798 -

Mlig455_026793 {REF} {Length: 2681} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=49.5]; AAA domain [PF13401.8, score=19.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.8]; 50S ribosome-binding GTPase [PF01926.25, score=18.7]} {Human: ENSG00000172780, RAB43, RAB43, member RAS oncogene family, [RH, Score=248, Expect=1e-83]} {Mouse: ENSMUSG00000030055, Rab43, RAB43, member RAS oncogene family, [RH, Score=238, Expect=4e-80]} {Dmel: FBgn0015793, Rab19, [RH, Score=224, Expect=2e-74]} {Celegans: WBGene00004278, rab-19, RAB family, [RH, Score=231, Expect=1e-77]} {Smed: dd_Smed_v6_2494_0_1, dd_Smed_v6_2494_0_1, [RH, Score=276, Expect=2e-95]} {RNA1509_22843} {RNA1310_16768, RNA1509_22843} {RNA1509_22843, RNA815_20284}

Mlig455_051806 {REF} {Length: 2724} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=49.5]; AAA domain [PF13401.8, score=19.5]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.8]; 50S ribosome-binding GTPase [PF01926.25, score=18.7]} {Human: ENSG00000172780, RAB43, RAB43, member RAS oncogene family, [RH, Score=247, Expect=3e-83]} {Mouse: ENSMUSG00000030055, Rab43, RAB43, member RAS oncogene family, [RH, Score=238, Expect=9e-80]} {Dmel: FBgn0015793, Rab19, [RH, Score=223, Expect=3e-74]} {Celegans: WBGene00004278, rab-19, RAB family, [RH, Score=229, Expect=7e-77]} {Smed: dd_Smed_v6_2494_0_1, dd_Smed_v6_2494_0_1, [RH, Score=275, Expect=7e-95]} {RNA1509_22843, RNA1509_39313} {RNA1310_16768, RNA1509_39313} {RNA1509_39313, RNA815_20284}
5. MligTC455_36681 904 18.82 Mlig455_059301, Mlig455_059314, Mlig455_065188

Neo: Int S/G2/M

Age: -

 BLOC1S2 1.719 0.767 - - - 0.952 -

Mlig455_059301 {REF} {Length: 3518} {TRANSSPLICED} {Pfam: Biogenesis of lysosome-related organelles complex-1 subunit 2 [PF10046.11, score=95.0]; HECT-like Ubiquitin-conjugating enzyme (E2)-binding [PF09814.11, score=26.6]} {Human: ENSG00000196072, BLOC1S2, biogenesis of lysosomal organelles complex 1 subunit 2, [Score=98.2, Expect=5e-24]} {Mouse: ENSMUSG00000057506, Bloc1s2, biogenesis of lysosomal organelles complex-1, subunit 2, [Score=92.0, Expect=1e-21]} {Dmel: FBgn0036118, Blos2, Biogenesis of lysosome-related organelles complex 1, subunit 2, [Score=68.2, Expect=3e-13]} {Smed: dd_Smed_v6_4954_0_1, dd_Smed_v6_4954_0_1, [Score=88.2, Expect=1e-20]} {RNA1509_17798, RNA1509_28459, RNA1509_59522} {RNA1310_18673.1, RNA1509_17798, RNA1509_59522} {RNA1509_17798, RNA1509_59522, RNA815_26255}

Mlig455_059314 {REF} {Length: 4395} {Pfam: HECT-like Ubiquitin-conjugating enzyme (E2)-binding [PF09814.11, score=28.3]} {RNA1509_28459, RNA1509_36458} {RNA1310_18673.1, RNA1509_36458} {RNA1509_36458, RNA815_26255}

Mlig455_065188 {REF} {Length: 3861} {Pfam: HECT-like Ubiquitin-conjugating enzyme (E2)-binding [PF09814.11, score=27.6]} {RNA1509_28459} {RNA1310_18673.1, RNA1509_28459} {RNA1509_28459, RNA815_26255}
6. MligTC455_51070 1213 25.27 Mlig455_061701, Mlig455_063084

Neo: -

Age: -

 1.694 0.738 - - - - 0.956

Mlig455_061701 {REF} {Length: 6393} {TRANSSPLICED} {Pfam: DDE superfamily endonuclease [PF03184.21, score=28.5]; helix-turn-helix, Psq domain [PF05225.18, score=23.8]} {Smed: dd_Smed_v6_11391_0_1, dd_Smed_v6_11391_0_1, [RH, Score=133, Expect=1e-31]} {RNA1509_8866} {RNA1310_3933} {RNA815_3611}

Mlig455_063084 {REF} {Length: 6746} {TRANSSPLICED} {Pfam: DDE superfamily endonuclease [PF03184.21, score=28.6]; helix-turn-helix, Psq domain [PF05225.18, score=23.8]} {Smed: dd_Smed_v6_11391_0_1, dd_Smed_v6_11391_0_1, [RH, Score=133, Expect=9e-32]} {RNA1509_31237, RNA1509_8866} {RNA1310_3933, RNA1509_31237} {RNA1509_31237, RNA815_3611}
7. MligTC455_47719 292 6.08 Mlig455_017393

Neo: -

Age: -

 1.692 - - - 0.972 0.720 - Mlig455_017393 {REF} {Length: 1081} {NoTransDecoderORF} {RNA1509_14952} {RNA1310_8790} {RNA815_3189}
8. MligTC455_25593 620 12.91 Mlig455_010640

Neo: -

Age: Up-Down-Up

 0.979 - - - - - 0.979 Mlig455_010640 {REF} {Length: 6295} {TRANSSPLICED} {RNA1509_21874, RNA1509_21918, RNA1509_4078} {RNA1310_3072, RNA1509_21874, RNA1509_21918} {RNA1509_21874, RNA1509_21918, RNA815_5186}
9. MligTC455_37042 342 7.12 Mlig455_067757

Neo: -

Age: -

 SYNGR1 0.958 - - 0.958 - - - Mlig455_067757 {REF} {Length: 3170} {Pfam: Membrane-associating domain [PF01284.25, score=77.3]} {Human: ENSG00000100321, SYNGR1, synaptogyrin 1, [RH, Score=160, Expect=3e-48]} {Mouse: ENSMUSG00000022415, Syngr1, synaptogyrin 1, [RH, Score=161, Expect=9e-49]; ENSMUSG00000007021, Syngr3, synaptogyrin 3, [RH, Score=155, Expect=1e-46]} {Dmel: FBgn0033876, Syngr, Synaptogyrin, [RH, Score=143, Expect=6e-42]} {Smed: dd_Smed_v6_6478_0_1, dd_Smed_v6_6478_0_1, [RH, Score=202, Expect=6e-65]} {RNA1509_33915} {RNA1310_33819} {RNA815_10361.1}
10. MligTC455_43500 559 11.65 Mlig455_037594

Neo: -

Age: -

Region-enriched R2: 2.819/0.00033

Regeneration-upregulated R5: 2.517

Regeneration-enriched R5: 2.517

 0.958 - - 0.958 - - - Mlig455_037594 {REF} {Length: 1310} {Pfam: Cell-cycle alteration and expression-elevated protein in tumour [PF16566.7, score=19.4]} {RNA1509_30182} {RNA1310_27119, RNA1509_30182} {RNA1509_30182, RNA815_11770}
11. MligTC455_46897 476 9.92 Mlig455_011469, Mlig455_011555, Mlig455_051070

Neo: -

Age: logFC(26M/2M)=-0.349

 FKRP 0.955 - - 0.955 - - -

Mlig455_011469 {REF} {Length: 1489} {Pfam: LicD family [PF04991.15, score=33.0]} {Human: ENSG00000181027, FKRP, fukutin related protein, [Score=52.4, Expect=6e-07]} {Mouse: ENSMUSG00000048920, Fkrp, fukutin related protein, [Score=51.2, Expect=9e-07]} {Smed: dd_Smed_v6_5971_0_1, dd_Smed_v6_5971_0_1, [Score=89.4, Expect=5e-20]} {RNA1509_44362} {RNA1310_26758} {RNA815_20679}

Mlig455_011555 {REF} {Length: 1205} {Pfam: LicD family [PF04991.15, score=33.4]} {Human: ENSG00000181027, FKRP, fukutin related protein, [Score=53.1, Expect=3e-07]} {Mouse: ENSMUSG00000048920, Fkrp, fukutin related protein, [Score=52.0, Expect=5e-07]} {Smed: dd_Smed_v6_5971_0_1, dd_Smed_v6_5971_0_1, [Score=90.1, Expect=3e-20]} {RNA1509_44362} {RNA1310_26758} {RNA815_20679}

Mlig455_051070 {REF} {Length: 1349} {Pfam: LicD family [PF04991.15, score=33.0]} {Human: ENSG00000181027, FKRP, fukutin related protein, [Score=52.4, Expect=6e-07]} {Mouse: ENSMUSG00000048920, Fkrp, fukutin related protein, [Score=51.2, Expect=9e-07]} {Smed: dd_Smed_v6_5971_0_1, dd_Smed_v6_5971_0_1, [Score=89.4, Expect=5e-20]} {RNA1509_44362} {RNA1310_26758, RNA1509_44362} {RNA1509_44362, RNA815_20679}
12. MligTC455_46356 690 14.38 Mlig455_013999

Neo: Irradiation

Age: -

 0.953 - - - - 0.953 - Mlig455_013999 {REF} {Length: 3399} {TRANSSPLICED} {RNA1509_17744} {RNA1310_20079, RNA1509_17744} {RNA1509_17744, RNA815_21139.2}
13. MligTC455_23371 101 2.11 Mlig455_006907

Neo: -

Age: Down-Up-Down

Region-enriched R8: 3.403/0.01276

 FSTL1 0.95 - - 0.950 - - - Mlig455_006907 {REF} {Length: 3700} {Pfam: Immunoglobulin I-set domain [PF07679.18, score=60.0]; Immunoglobulin domain [PF13927.8, score=59.2]; Kazal-type serine protease inhibitor domain [PF07648.17, score=42.0]; Immunoglobulin domain [PF13895.8, score=33.6]; Immunoglobulin domain [PF00047.27, score=32.3]; Kazal-type serine protease inhibitor domain [PF00050.23, score=28.7]; Immunoglobulin V-set domain [PF07686.19, score=27.7]} {Human: ENSG00000163430, FSTL1, follistatin like 1, [RH, Score=68.9, Expect=3e-13]} {Mouse: ENSMUSG00000022816, Fstl1, follistatin-like 1, [RH, Score=68.2, Expect=6e-12]} {Celegans: WBGene00004256, pxn-1, Peroxidasin homolog, [Score=51.2, Expect=3e-06]} {RNA1509_41764} {RNA1310_9313, RNA1509_41764} {RNA1509_41764, RNA815_25649}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA