M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40982

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40982 27 0.56 Mlig455_024039

Neo: -

Age: -

 SLC5A12 Mlig455_024039 {REF} {Length: 2246} {Pfam: Sodium:solute symporter family [PF00474.19, score=22.5]} {Human: ENSG00000148942, SLC5A12, solute carrier family 5 member 12, [Score=148, Expect=3e-39]} {Mouse: ENSMUSG00000041644, Slc5a12, solute carrier family 5 (sodium/glucose cotransporter), member 12, [Score=139, Expect=3e-36]; ENSMUSG00000020062, Slc5a8, solute carrier family 5 (iodide transporter), member 8, [Score=138, Expect=5e-36]} {Dmel: FBgn0031998, SLC5A11, Sodium/solute co-transporter-like 5A11, [Score=127, Expect=4e-32]} {Celegans: WBGene00014092, ZK822.5, [Score=99.0, Expect=8e-23]} {Smed: dd_Smed_v6_14173_0_1, dd_Smed_v6_14173_0_1, [Score=148, Expect=6e-40]} {RNA1509_39308, RNA1509_59448} {RNA1310_13571, RNA1509_39308} {RNA1509_39308, RNA815_16796}

Cumulative graph for MligTC455_40982

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.767 1.004 0.32039 0.96943
RegionR2 4.136 1.004 0.01129 0.10839
RegionR3 -0.363 1.004 0.96257 1.00000
RegionR4 -2.19 1.004 0.99960 1.00000
RegionR5 -1.898 1.004 0.99964 1.00000
RegionR6 -1.129 1.004 0.99755 1.00000
RegionR7 2.185 1.004 0.25725 0.88436
RegionR8 4.027 1.004 0.03793 0.38255

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.059 1.004 0.99976 1.00000
RegenerationR2 0.492 1.004 0.40190 0.81551
RegenerationR3 4.461 1.004 0.00091 0.04688
RegenerationR4 3.693 1.004 0.00794 0.13174
RegenerationR5 2.904 1.004 0.00828 0.16496
RegenerationR6 2.815 1.004 0.10090 0.39364
RegenerationBL -1.371 1.004 0.70465 1.00000
RegenerationTP -2.26 1.004 0.54316 0.92840


Genes with expression patterns similar to MligTC455_40982

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40982 27 0.56 Mlig455_024039

Neo: -

Age: -

 SLC5A12 3 1.000 - - - 1.000 1.000 Mlig455_024039 {REF} {Length: 2246} {Pfam: Sodium:solute symporter family [PF00474.19, score=22.5]} {Human: ENSG00000148942, SLC5A12, solute carrier family 5 member 12, [Score=148, Expect=3e-39]} {Mouse: ENSMUSG00000041644, Slc5a12, solute carrier family 5 (sodium/glucose cotransporter), member 12, [Score=139, Expect=3e-36]; ENSMUSG00000020062, Slc5a8, solute carrier family 5 (iodide transporter), member 8, [Score=138, Expect=5e-36]} {Dmel: FBgn0031998, SLC5A11, Sodium/solute co-transporter-like 5A11, [Score=127, Expect=4e-32]} {Celegans: WBGene00014092, ZK822.5, [Score=99.0, Expect=8e-23]} {Smed: dd_Smed_v6_14173_0_1, dd_Smed_v6_14173_0_1, [Score=148, Expect=6e-40]} {RNA1509_39308, RNA1509_59448} {RNA1310_13571, RNA1509_39308} {RNA1509_39308, RNA815_16796}
2. MligTC455_21478 61 1.27 Mlig455_044576

Neo: Germline

Age: Up-Up-Down

Region-enriched R4: 4.287/0.01616

 0.979 - - - - 0.979 - Mlig455_044576 {REF} {Length: 4273} {RNA1509_33922} {RNA1310_8878} {RNA815_5630}
3. MligTC455_06664 63 1.32 Mlig455_010697, Mlig455_010802

Neo: -

Age: Up-Down-Down

 0.974 - - - - 0.974 -

Mlig455_010697 {REF} {Length: 438} {Mouse: ENSMUSG00000068078, 2310034C09Rik, RIKEN cDNA 2310034C09 gene, [RH, Score=45.4, Expect=1e-06]} {RNA1509_55894}

Mlig455_010802 {REF} {Length: 505} {NoTransDecoderORF} {RNA1509_55894}
4. MligTC455_17936 83 1.72 Mlig455_015624

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_015624 {REF} {Length: 700} {RNA1509_39987} {RNA1310_11976} {RNA815_1768.1}
5. MligTC455_56151 4 0.08 Mlig455_028173

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_028173 {REF} {Length: 608}
6. MligTC455_35896 8 0.16 Mlig455_068631

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_068631 {REF} {Length: 2266} {RNA1310_107895}
7. MligTC455_53737 14 0.29 Mlig455_055523

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_055523 {REF} {Length: 540} {NoTransDecoderORF} {RNA1509_55611} {RNA1310_30107.1} {RNA815_17895}
8. MligTC455_07290 12 0.25 Mlig455_052599

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_052599 {REF} {Length: 1136} {NoTransDecoderORF} {RNA1509_52997} {RNA1310_29520} {RNA815_20481.1}
9. MligTC455_49737 9 0.18 Mlig455_045303

Neo: -

Age: -

 NAA35 0.961 - - - - 0.961 - Mlig455_045303 {REF} {Length: 3104} {TRANSSPLICED} {Pfam: Mak10 subunit, NatC N(alpha)-terminal acetyltransferase [PF04112.15, score=52.6]} {Human: ENSG00000135040, NAA35, N(alpha)-acetyltransferase 35, NatC auxiliary subunit, [RH, Score=223, Expect=4e-62]} {Mouse: ENSMUSG00000021555, Naa35, N(alpha)-acetyltransferase 35, NatC auxiliary subunit, [RH, Score=220, Expect=2e-61]} {Dmel: FBgn0034982, Naa35, N(alpha)-acetyltransferase 35, [RH, Score=194, Expect=7e-52]} {Celegans: WBGene00020719, natc-1, N-alpha-AcetylTransferase C complex subunit, [RH, Score=51.6, Expect=2e-06]} {Smed: dd_Smed_v6_7606_0_1, dd_Smed_v6_7606_0_1, [RH, Score=246, Expect=1e-70]} {RNA1509_10746} {RNA1310_3968} {RNA815_6081}
10. MligTC455_14482 82 1.7 Mlig455_040190

Neo: Germline

Age: -

Region-enriched R4: 3.783/0.00054

 0.959 - - - - 0.959 - Mlig455_040190 {REF} {Length: 688} {RNA1509_52538} {RNA1310_59981.1} {RNA815_37277}
11. MligTC455_38807 27 0.56 Mlig455_040236, Mlig455_050654, Mlig455_058203

Neo: Int S/G2/M

Age: logFC(26M/2M)=-0.714

 0.959 - - - - 0.959 -

Mlig455_040236 {REF} {Length: 443} {Pfam: Integrase zinc binding domain [PF17921.3, score=30.4]} {RNA1509_37828} {RNA1310_2927} {RNA815_3168.1}

Mlig455_050654 {REF} {Length: 4214} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=98.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=83.8]; Integrase zinc binding domain [PF17921.3, score=64.9]; Integrase core domain [PF00665.28, score=46.3]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=116, Expect=4e-27]} {RNA1509_12358} {RNA1310_2289} {RNA815_3168.1}

Mlig455_058203 {REF} {Length: 1011} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.2]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=87.3]; Integrase zinc binding domain [PF17921.3, score=66.0]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=118, Expect=2e-30]} {RNA1509_37828} {RNA1310_2289} {RNA815_3168.1}
12. MligTC455_14806 40 0.84 Mlig455_045389, Mlig455_045484

Neo: -

Age: -

 0.958 - - - - 0.958 -

Mlig455_045389 {REF} {Length: 988} {RNA1509_19845} {RNA1310_2278.1} {RNA815_46842}

Mlig455_045484 {REF} {Length: 950} {RNA1509_19845} {RNA1310_2278.1} {RNA815_46842}
13. MligTC455_14949 191 3.97 Mlig455_018694, Mlig455_018890, Mlig455_064941

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.382

 PISD 0.955 - - - - 0.955 -

Mlig455_018694 {REF} {Length: 2246} {Pfam: Phosphatidylserine decarboxylase [PF02666.17, score=197.9]} {Human: ENSG00000241878, PISD, phosphatidylserine decarboxylase, [Score=271, Expect=8e-88]} {Mouse: ENSMUSG00000093574, Gm20671, predicted gene 20671, [Score=272, Expect=1e-85]; ENSMUSG00000023452, Pisd, phosphatidylserine decarboxylase, [Score=272, Expect=5e-88]} {Dmel: FBgn0026576, CG5991, [RH, Score=268, Expect=8e-86]} {Celegans: WBGene00015159, psd-1, Phosphatidylserine decarboxylase proenzyme, mitochondrial Phosphatidylserine decarboxylase beta chain Phosphatidylserine decarboxylase alpha chain, [RH, Score=211, Expect=8e-65]} {Smed: dd_Smed_v6_10310_0_1, dd_Smed_v6_10310_0_1, [RH, Score=278, Expect=1e-90]} {RNA1509_32922} {RNA1310_57024} {RNA815_32163.1}

Mlig455_018890 {REF} {Length: 2437} {Pfam: Phosphatidylserine decarboxylase [PF02666.17, score=198.3]} {Human: ENSG00000241878, PISD, phosphatidylserine decarboxylase, [Score=271, Expect=6e-88]} {Mouse: ENSMUSG00000023452, Pisd, phosphatidylserine decarboxylase, [Score=271, Expect=4e-88]; ENSMUSG00000093574, Gm20671, predicted gene 20671, [Score=271, Expect=1e-85]} {Dmel: FBgn0026576, CG5991, [RH, Score=268, Expect=4e-86]} {Celegans: WBGene00015159, psd-1, Phosphatidylserine decarboxylase proenzyme, mitochondrial Phosphatidylserine decarboxylase beta chain Phosphatidylserine decarboxylase alpha chain, [Score=206, Expect=3e-63]} {Smed: dd_Smed_v6_10310_0_1, dd_Smed_v6_10310_0_1, [RH, Score=278, Expect=9e-91]} {RNA1509_32922} {RNA1310_57024, RNA1509_32922} {RNA1509_32922, RNA815_32163.1}

Mlig455_064941 {REF} {Length: 2436} {Pfam: Phosphatidylserine decarboxylase [PF02666.17, score=199.3]} {Human: ENSG00000241878, PISD, phosphatidylserine decarboxylase, [Score=268, Expect=5e-87]} {Mouse: ENSMUSG00000023452, Pisd, phosphatidylserine decarboxylase, [Score=269, Expect=6e-87]; ENSMUSG00000093574, Gm20671, predicted gene 20671, [Score=268, Expect=8e-85]} {Dmel: FBgn0026576, CG5991, [RH, Score=270, Expect=8e-87]} {Celegans: WBGene00015159, psd-1, Phosphatidylserine decarboxylase proenzyme, mitochondrial Phosphatidylserine decarboxylase beta chain Phosphatidylserine decarboxylase alpha chain, [Score=206, Expect=4e-63]} {Smed: dd_Smed_v6_10310_0_1, dd_Smed_v6_10310_0_1, [RH, Score=279, Expect=4e-91]} {RNA1509_32922} {RNA1310_57024} {RNA815_32163.1}
14. MligTC455_31942 58 1.22 Mlig455_057674

Neo: Germline

Age: logFC(26M/2M)=0.375

Region-enriched R4: 5.559/0.00022

 0.954 - - - - 0.954 - Mlig455_057674 {REF} {Length: 1620} {RNA1509_15174} {RNA1310_20815} {RNA815_8028}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA