M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35896

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35896 8 0.16 Mlig455_068631

Neo: -

Age: -

 Mlig455_068631 {REF} {Length: 2266} {RNA1310_107895}

Cumulative graph for MligTC455_35896

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.646 0.725 1.00000 1.00000
RegionR2 3.198 0.725 1.00000 1.00000
RegionR3 0.074 0.725 1.00000 1.00000
RegionR4 1.06 0.725 1.00000 1.00000
RegionR5 -1.185 0.725 1.00000 1.00000
RegionR6 0.086 0.725 1.00000 1.00000
RegionR7 0.666 0.725 1.00000 1.00000
RegionR8 0.746 0.725 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.343 0.725 0.99985 1.00000
RegenerationR2 0.032 0.725 1.00000 1.00000
RegenerationR3 3.395 0.725 1.00000 1.00000
RegenerationR4 -0.332 0.725 1.00000 1.00000
RegenerationR5 1.189 0.725 0.99986 1.00000
RegenerationR6 2.771 0.725 1.00000 1.00000
RegenerationBL 0.329 0.725 0.99996 1.00000
RegenerationTP 0.565 0.725 0.99999 1.00000


Genes with expression patterns similar to MligTC455_35896

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35896 8 0.16 Mlig455_068631

Neo: -

Age: -

 3 1.000 1.000 - - 1.000 - Mlig455_068631 {REF} {Length: 2266} {RNA1310_107895}
2. MligTC455_10011 57 1.19 Mlig455_035695, Mlig455_035789

Neo: -

Age: Down-Down-Up

Region-enriched R4: 5.860/0.00791

 2.658 0.954 0.925 - - 0.779 -

Mlig455_035695 {REF} {Length: 1462} {RNA1509_59374} {RNA1310_38389} {RNA815_25965}

Mlig455_035789 {REF} {Length: 1216} {RNA1310_38389} {RNA815_25965}
3. MligTC455_11976 18 0.37 Mlig455_030317

Neo: -

Age: -

Region-enriched R4: 3.345/0.02722

 2.635 0.794 0.963 - - 0.878 - Mlig455_030317 {REF} {Length: 1158} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=22.0]} {RNA1509_16469} {RNA1310_21639.1}
4. MligTC455_37219 10 0.22 Mlig455_023042, Mlig455_031644, Mlig455_040437, Mlig455_069768, Mlig455_069769

Neo: Irradiation

Age: Up-Down-Down

 2.597 0.961 0.905 - - 0.731 -

Mlig455_023042 {REF} {Length: 1049} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=37.6]} {RNA1509_41272} {RNA1310_15646.2} {RNA815_6229.1}

Mlig455_031644 {REF} {Length: 692} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=43.1]} {RNA1509_41272} {RNA1310_15646.2} {RNA815_50143}

Mlig455_040437 {REF} {Length: 5068} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=39.0]} {RNA1509_4722} {RNA1310_655.1} {RNA815_335.1}

Mlig455_069768 {REF} {Length: 331} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=39.0]} {RNA1509_41272} {RNA1310_13129.1} {RNA815_6229.1}

Mlig455_069769 {REF} {Length: 323} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=39.0]} {RNA1509_41272} {RNA1310_15646.2} {RNA815_6229.1}
5. MligTC455_06664 63 1.32 Mlig455_010697, Mlig455_010802

Neo: -

Age: Up-Down-Down

 2.495 0.729 0.786 - - 0.980 -

Mlig455_010697 {REF} {Length: 438} {Mouse: ENSMUSG00000068078, 2310034C09Rik, RIKEN cDNA 2310034C09 gene, [RH, Score=45.4, Expect=1e-06]} {RNA1509_55894}

Mlig455_010802 {REF} {Length: 505} {NoTransDecoderORF} {RNA1509_55894}
6. MligTC455_20938 11 0.23 Mlig455_033114

Neo: -

Age: -

 2.44 0.719 0.954 - - 0.767 - Mlig455_033114 {REF} {Length: 1211} {RNA1509_25103} {RNA1310_54683} {RNA815_34048}
7. MligTC455_33535 62 1.28 Mlig455_007576

Neo: Int S/G2/M

Age: -

Region-enriched R4: 4.795/0.00048

 1.937 0.979 0.958 - - - - Mlig455_007576 {REF} {Length: 809} {NoTransDecoderORF} {RNA1509_51609} {RNA1310_6817.1} {RNA815_39147}
8. MligTC455_13514 53 1.1 Mlig455_010467

Neo: Germline

Age: Down-Down-Down, logFC(26M/2M)=-1.228

 1.856 0.866 0.990 - - - - Mlig455_010467 {REF} {Length: 1212} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=49.7]} {Smed: dd_Smed_v6_16336_0_2, dd_Smed_v6_16336_0_2, [Score=92.4, Expect=1e-23]} {RNA1509_29748} {RNA1310_27208} {RNA815_13547.2}
9. MligTC455_40869 23 0.49 Mlig455_008837

Neo: Germline

Age: Up-Up-Down

 1.844 0.973 0.871 - - - - Mlig455_008837 {REF} {Length: 1190} {RNA1509_5212} {RNA1310_44372} {RNA815_11280.2}
10. MligTC455_10370 8 0.18 Mlig455_028583

Neo: -

Age: Up-Down-Down

 1.841 0.971 0.870 - - - - Mlig455_028583 {REF} {Length: 4752} {Pfam: Retrotransposon gag protein [PF03732.19, score=23.6]} {RNA1509_37310} {RNA1310_5066, RNA1509_37310} {RNA1509_37310, RNA815_49957}
11. MligTC455_05189 10 0.21 Mlig455_020463

Neo: -

Age: -

 1.828 0.853 0.975 - - - - Mlig455_020463 {REF} {Length: 614} {NoTransDecoderORF} {RNA1509_28272} {RNA1310_37336} {RNA815_28049}
12. MligTC455_25662 18 0.37 Mlig455_009189, Mlig455_009610

Neo: -

Age: -

 1.794 0.822 0.972 - - - -

Mlig455_009189 {REF} {Length: 1408} {RNA1310_85197} {RNA815_44513}

Mlig455_009610 {REF} {Length: 916} {NoTransDecoderORF} {RNA1310_73913} {RNA815_40254}
13. MligTC455_10099 94 1.95 Mlig455_038684, Mlig455_038698

Neo: Germline

Age: Down-Down-Down, logFC(26M/2M)=-0.820

Region-specific R4: 6.728

Region-enriched R4: 6.187/0.00013

 1.791 0.820 0.971 - - - -

Mlig455_038684 {REF} {Length: 1407} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.9]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=105, Expect=4e-26]} {RNA1509_30575} {RNA1310_32071.3} {RNA815_13547.1}

Mlig455_038698 {REF} {Length: 1405} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.9]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=105, Expect=4e-26]} {RNA1509_30575} {RNA1310_32071.3} {RNA815_13547.1}
14. MligTC455_31655 9 0.18 Mlig455_042464

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-1.863

 RTL1 1.78 0.817 0.963 - - - - Mlig455_042464 {REF} {Length: 4856} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=115.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=93.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=85.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=68.6, Expect=3e-11]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=76.3, Expect=7e-14]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=76.3, Expect=7e-14]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=275, Expect=2e-84]} {RNA1509_37360} {RNA1310_1636} {RNA815_16797}
15. MligTC455_05647 48 1.01 Mlig455_059394, Mlig455_065555

Neo: -

Age: -

Region-enriched R4: 4.444/0.00445

 1.772 0.789 0.983 - - - -

Mlig455_059394 {REF} {Length: 1110} {RNA1310_46850}

Mlig455_065555 {REF} {Length: 2312} {RNA1310_46850}
16. MligTC455_07817 87 1.81 Mlig455_008042

Neo: Germline

Age: -

 1.767 0.813 0.954 - - - - Mlig455_008042 {REF} {Length: 1040} {RNA1509_56901} {RNA1310_38278} {RNA815_20254}
17. MligTC455_34395 53 1.1 Mlig455_023369, Mlig455_062084, Mlig455_070161, Mlig455_070326

Neo: Germline

Age: logFC(26M/2M)=-0.830

Regeneration-enriched R6: 7.008
Regeneration-enriched R4: 4.755

 ANGPTL7, NYNRIN 1.759 0.991 - - - 0.768 -

Mlig455_023369 {REF} {Length: 4020} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=109.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=107.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=66.4]; Integrase zinc binding domain [PF17921.3, score=58.6]; Integrase core domain [PF00665.28, score=52.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=27.6]; Integrase core domain [PF13683.8, score=21.3]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=61.6, Expect=1e-08]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=60.8, Expect=1e-08]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=292, Expect=8e-83]} {RNA1509_5701} {RNA1310_2007} {RNA815_7723.1}

Mlig455_062084 {REF} {Length: 5472} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=82.4]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=77.8, Expect=2e-16]; ENSG00000154188, ANGPT1, angiopoietin 1, [Score=75.5, Expect=3e-15]; ENSG00000091879, ANGPT2, angiopoietin 2, [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=77.4, Expect=2e-16]; ENSMUSG00000022309, Angpt1, angiopoietin 1, [Score=75.1, Expect=3e-15]} {Dmel: FBgn0030163, CG1791, [Score=60.8, Expect=1e-10]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=45.1, Expect=2e-06]} {RNA1509_5701} {RNA1310_2007} {RNA815_7723.1}

Mlig455_070161 {REF} {Length: 1519} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.0]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=109.7]; Integrase zinc binding domain [PF17921.3, score=30.6]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=144, Expect=1e-39]} {RNA1310_2007} {RNA815_20626}

Mlig455_070326 {REF} {Length: 3925} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=109.9]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=107.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=66.4]; Integrase zinc binding domain [PF17921.3, score=58.5]; Integrase core domain [PF00665.28, score=53.1]; gag-polyprotein putative aspartyl protease [PF13975.8, score=29.5]; Aspartyl protease [PF13650.8, score=22.6]; Integrase core domain [PF13683.8, score=22.3]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=66.2, Expect=4e-10]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=65.9, Expect=4e-10]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=293, Expect=8e-83]} {RNA1509_5701} {RNA1310_2007} {RNA815_7723.1}
18. MligTC455_20511 8 0.17 Mlig455_037408

Neo: Germline

Age: -

 1.756 0.770 0.986 - - - - Mlig455_037408 {REF} {Length: 542} {RNA1310_68100} {RNA815_47184}
19. MligTC455_47898 18 0.38 Mlig455_000079

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.674

 1.739 0.786 0.953 - - - - Mlig455_000079 {REF} {Length: 2941} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=45.2]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=23.2]} {RNA1509_16596} {RNA1310_58467} {RNA815_45213}
20. MligTC455_04017 11 0.23 Mlig455_029334

Neo: Germline

Age: Up-Down-Down

 1.738 0.953 - - - 0.785 - Mlig455_029334 {REF} {Length: 2977} {RNA1509_58549} {RNA1310_15703} {RNA815_38971}
21. MligTC455_25966 16 0.33 Mlig455_031593

Neo: Int S/G2/M

Age: Down-Down-Down, logFC(26M/2M)=-1.293

 1.729 - 0.744 - - 0.985 - Mlig455_031593 {REF} {Length: 1613} {Pfam: THAP domain [PF05485.14, score=33.8]} {RNA1509_5734} {RNA1310_85582} {RNA815_22569.2}
22. MligTC455_09249 11 0.24 Mlig455_029919

Neo: -

Age: -

 1.723 0.963 0.760 - - - - Mlig455_029919 {REF} {Length: 843} {RNA1509_56557} {RNA1310_78326.2} {RNA815_36022}
23. MligTC455_17109 16 0.34 Mlig455_052533

Neo: -

Age: logFC(26M/2M)=1.201

 1.719 0.766 0.953 - - - - Mlig455_052533 {REF} {Length: 5477} {Pfam: Phage integrase family [PF00589.24, score=36.3]} {RNA1509_57857} {RNA1310_23997.1} {RNA815_7697}
24. MligTC455_01479 8 0.16 Mlig455_018082

Neo: Germline

Age: -

 1.713 0.737 0.976 - - - - Mlig455_018082 {REF} {Length: 851} {RNA1310_71658} {RNA815_45524}
25. MligTC455_37949 10 0.2 Mlig455_067778

Neo: Irradiation

Age: Up-Down-Down

 1.712 - 0.971 - - 0.741 - Mlig455_067778 {REF} {Length: 2255} {RNA1310_68853}
26. MligTC455_22749 19 0.4 Mlig455_034189

Neo: -

Age: -

 1.71 0.739 0.971 - - - - Mlig455_034189 {REF} {Length: 1647} {NoTransDecoderORF} {RNA1509_39040} {RNA1310_21199} {RNA815_4579}
27. MligTC455_30201 49 1.02 Mlig455_006805

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.603

 SCNN1B 1.699 0.730 0.969 - - - - Mlig455_006805 {REF} {Length: 2461} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=193.3]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=54.7, Expect=3e-07]; ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=54.7, Expect=4e-07]} {Mouse: ENSMUSG00000038276, Asic3, acid-sensing (proton-gated) ion channel 3, [Score=58.2, Expect=2e-08]; ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=55.5, Expect=1e-07]} {Celegans: WBGene00012137, asic-2, Degenerin-like protein asic-2, [Score=53.9, Expect=2e-07]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=95.1, Expect=2e-20]} {RNA1509_36956} {RNA1310_12232.1} {RNA815_4577.1}
28. MligTC455_51119 47 0.99 Mlig455_021777, Mlig455_050835

Neo: -

Age: Up-Down-Down

 HVCN1 1.698 0.737 0.961 - - - -

Mlig455_021777 {REF} {Length: 1306} {Human: ENSG00000122986, HVCN1, hydrogen voltage gated channel 1, [Score=47.4, Expect=1e-05]} {Mouse: ENSMUSG00000064267, Hvcn1, hydrogen voltage-gated channel 1, [Score=48.9, Expect=3e-06]} {Smed: dd_Smed_v6_20053_0_1, dd_Smed_v6_20053_0_1, [Score=214, Expect=2e-65]} {RNA1310_72509} {RNA815_64339}

Mlig455_050835 {REF} {Length: 1720} {Pfam: Ion transport protein [PF00520.33, score=24.8]} {Human: ENSG00000122986, HVCN1, hydrogen voltage gated channel 1, [Score=65.9, Expect=2e-11]} {Mouse: ENSMUSG00000064267, Hvcn1, hydrogen voltage-gated channel 1, [Score=62.0, Expect=3e-10]} {Smed: dd_Smed_v6_20053_0_1, dd_Smed_v6_20053_0_1, [Score=308, Expect=7e-100]} {RNA1310_72509} {RNA815_64339}
29. MligTC455_11562 10 0.22 Mlig455_041275

Neo: -

Age: -

 1.697 - 0.956 - - 0.741 - Mlig455_041275 {REF} {Length: 903} {RNA1509_37150} {RNA1310_56846} {RNA815_33016.1}
30. MligTC455_06920 64 1.33 Mlig455_030382

Neo: Germline

Age: -

Region-enriched R4: 3.121/0.01836

 1.673 0.705 0.968 - - - - Mlig455_030382 {REF} {Length: 1405} {RNA1509_54678} {RNA1310_47150, RNA1509_54678} {RNA1509_54678, RNA815_42356}
31. MligTC455_07169 8 0.17 Mlig455_025200

Neo: -

Age: Up-Down-Down

 ASAH2 0.992 - 0.992 - - - - Mlig455_025200 {REF} {Length: 1478} {Pfam: Neutral/alkaline non-lysosomal ceramidase, N-terminal [PF04734.15, score=427.5]} {Human: ENSG00000188611, ASAH2, N-acylsphingosine amidohydrolase 2, [Score=290, Expect=2e-91]} {Mouse: ENSMUSG00000024887, Asah2, N-acylsphingosine amidohydrolase 2, [Score=299, Expect=3e-95]} {Dmel: FBgn0039774, CDase, Ceramidase, [Score=278, Expect=2e-87]} {Smed: dd_Smed_v6_1726_0_1, dd_Smed_v6_1726_0_1, [Score=354, Expect=4e-117]} {RNA1509_3145} {RNA1310_12861} {RNA815_1566.1}
32. MligTC455_28608 20 0.41 Mlig455_000294, Mlig455_046709

Neo: Int S/G2/M

Age: -

Region-enriched R4: 5.786/0.03458

 0.992 - 0.992 - - - -

Mlig455_000294 {REF} {Length: 3838} {RNA1509_46426} {RNA1310_11609} {RNA815_14050}

Mlig455_046709 {REF} {Length: 923} {RNA1310_11829.1} {RNA815_7078}
33. MligTC455_46335 4 0.09 Mlig455_065243

Neo: -

Age: Up-Down-Down

 FAM13A 0.987 - 0.987 - - - - Mlig455_065243 {REF} {Length: 3502} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=137.5]} {Human: ENSG00000138640, FAM13A, family with sequence similarity 13 member A, [RH, Score=135, Expect=1e-31]} {Mouse: ENSMUSG00000037709, Fam13a, family with sequence similarity 13, member A, [RH, Score=125, Expect=6e-29]} {Dmel: FBgn0028494, CG6424, [RH, Score=92.8, Expect=8e-19]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=91.3, Expect=1e-19]} {Smed: dd_Smed_v6_9330_0_1, dd_Smed_v6_9330_0_1, [RH, Score=180, Expect=2e-46]} {RNA1509_4340} {RNA1310_2121} {RNA815_16484}
34. MligTC455_15214 67 1.4 Mlig455_054254

Neo: Int S/G2/M

Age: Up-Up-Down, logFC(26M/2M)=1.458

Region-enriched R4: 4.867/0.00000

 TPMT 0.986 - 0.986 - - - - Mlig455_054254 {REF} {Length: 1271} {Pfam: Thiopurine S-methyltransferase (TPMT) [PF05724.13, score=80.4]} {Human: ENSG00000137364, TPMT, thiopurine S-methyltransferase, [Score=75.1, Expect=5e-15]} {Mouse: ENSMUSG00000021376, Tpmt, thiopurine methyltransferase, [Score=63.5, Expect=3e-11]} {Smed: dd_Smed_v6_1495_0_1, dd_Smed_v6_1495_0_1, [RH, Score=78.2, Expect=1e-16]} {RNA1509_43164} {RNA1310_29080} {RNA815_13368}
35. MligTC455_14844 50 1.04 Mlig455_003513, Mlig455_039347, Mlig455_044538, Mlig455_067570

Neo: Germline

Age: -

 PGBD4 0.983 0.983 - - - - -

Mlig455_003513 {REF} {Length: 2351} {Pfam: Transposase IS4 [PF13843.8, score=237.9]} {Human: ENSG00000182405, PGBD4, piggyBac transposable element derived 4, [Score=136, Expect=9e-34]} {Dmel: FBgn0033750, CG13151, [Score=55.5, Expect=8e-08]} {Smed: dd_Smed_v6_13935_0_1, dd_Smed_v6_13935_0_1, [RH, Score=194, Expect=4e-58]} {RNA1509_44838} {RNA1310_12476} {RNA815_5874}

Mlig455_039347 {REF} {Length: 2473} {Pfam: Transposase IS4 [PF13843.8, score=244.9]} {Human: ENSG00000182405, PGBD4, piggyBac transposable element derived 4, [Score=142, Expect=1e-35]} {Dmel: FBgn0033750, CG13151, [Score=59.3, Expect=6e-09]} {Smed: dd_Smed_v6_13935_0_1, dd_Smed_v6_13935_0_1, [RH, Score=204, Expect=2e-61]} {RNA1509_44838} {RNA1310_12476} {RNA815_5874}

Mlig455_044538 {REF} {Length: 2473} {Pfam: Transposase IS4 [PF13843.8, score=244.9]} {Human: ENSG00000182405, PGBD4, piggyBac transposable element derived 4, [Score=142, Expect=1e-35]} {Dmel: FBgn0033750, CG13151, [Score=59.3, Expect=6e-09]} {Smed: dd_Smed_v6_13935_0_1, dd_Smed_v6_13935_0_1, [RH, Score=204, Expect=2e-61]} {RNA1509_44838} {RNA1310_12476, RNA1509_44838} {RNA1509_44838, RNA815_5874}

Mlig455_067570 {REF} {Length: 1911} {Pfam: Transposase IS4 [PF13843.8, score=106.1]} {Human: ENSG00000182405, PGBD4, piggyBac transposable element derived 4, [Score=58.5, Expect=4e-09]} {Smed: dd_Smed_v6_13935_0_7, dd_Smed_v6_13935_0_7, [Score=115, Expect=2e-30]} {RNA1509_44838} {RNA1310_12476} {RNA815_5874}
36. MligTC455_36289 50 1.05 Mlig455_035320, Mlig455_035363

Neo: -

Age: -

Region-enriched R4: 2.841/0.02306
Region-enriched R5: 2.477/0.01980

 0.982 0.982 - - - - -

Mlig455_035320 {REF} {Length: 1076} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=39.2]} {Smed: dd_Smed_v6_13661_0_1, dd_Smed_v6_13661_0_1, [Score=159, Expect=3e-48]} {RNA1509_30304} {RNA1310_26220.2} {RNA815_9613}

Mlig455_035363 {REF} {Length: 844} {RNA1509_30304} {RNA1310_69628} {RNA815_9613}
37. MligTC455_29683 28 0.57 Mlig455_034540

Neo: -

Age: -

 0.98 - 0.980 - - - - Mlig455_034540 {REF} {Length: 1928} {Pfam: THAP domain [PF05485.14, score=33.7]; Transposase protein [PF12017.10, score=30.2]} {RNA1509_16956} {RNA1310_88414} {RNA815_33530}
38. MligTC455_24846 21 0.45 Mlig455_053296, Mlig455_053417

Neo: -

Age: -

Region-enriched R4: 4.606/0.01379

 0.976 - 0.976 - - - -

Mlig455_053296 {REF} {Length: 508} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59965} {RNA1310_89009} {RNA815_38962.2}

Mlig455_053417 {REF} {Length: 1347} {Pfam: Winged helix-turn helix [PF13551.8, score=19.2]} {RNA1509_10628} {RNA1310_33625.3} {RNA815_10117.1}
39. MligTC455_37333 5 0.09 Mlig455_051866

Neo: -

Age: -

 0.975 - 0.975 - - - - Mlig455_051866 {REF} {Length: 454} {RNA1310_88477}
40. MligTC455_12309 17 0.36 Mlig455_043008

Neo: Irradiation

Age: Up-Down-Down

 ABCA10 0.97 0.970 - - - - - Mlig455_043008 {REF} {Length: 5813} {Pfam: ABC transporter [PF00005.29, score=175.6]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=76.3]; ABC-2 family transporter protein [PF12698.9, score=38.5]; AAA domain [PF13476.8, score=29.2]; AAA ATPase domain [PF13175.8, score=28.6]; RsgA GTPase [PF03193.18, score=27.5]; NB-ARC domain [PF00931.24, score=24.9]; AAA domain [PF13401.8, score=24.0]; P-loop containing region of AAA domain [PF13555.8, score=23.9]; AAA domain [PF13604.8, score=23.9]; AAA ATPase domain [PF13191.8, score=22.9]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.9]} {Human: ENSG00000154263, ABCA10, ATP binding cassette subfamily A member 10, [Score=236, Expect=3e-62]; ENSG00000154258, ABCA9, ATP binding cassette subfamily A member 9, [Score=226, Expect=5e-59]; ENSG00000141338, ABCA8, ATP binding cassette subfamily A member 8, [Score=225, Expect=1e-58]} {Mouse: ENSMUSG00000041828, Abca8a, ATP-binding cassette, sub-family A (ABC1), member 8a, [Score=223, Expect=6e-58]; ENSMUSG00000020620, Abca8b, ATP-binding cassette, sub-family A (ABC1), member 8b, [Score=215, Expect=1e-55]} {Dmel: FBgn0031170, CG1718, [Score=185, Expect=1e-46]} {Celegans: WBGene00000421, ced-7, ABC transporter ced-7, [Score=295, Expect=9e-81]} {Smed: dd_Smed_v6_10304_0_1, dd_Smed_v6_10304_0_1, [Score=176, Expect=4e-44]} {RNA1509_6974} {RNA1310_809} {RNA815_234.1}
41. MligTC455_27919 11 0.23 Mlig455_033686

Neo: -

Age: Down-Up-Down

 0.97 - 0.970 - - - - Mlig455_033686 {REF} {Length: 2178} {Pfam: Kelch motif [PF01344.27, score=47.6]; Kelch motif [PF13964.8, score=40.3]; Galactose oxidase, central domain [PF13418.8, score=39.2]; Galactose oxidase, central domain [PF13415.8, score=26.9]; Kelch motif [PF07646.17, score=24.4]} {Smed: dd_Smed_v6_2508_0_1, dd_Smed_v6_2508_0_1, [Score=76.3, Expect=4e-17]} {RNA1509_20477} {RNA1310_29714} {RNA815_11073}
42. MligTC455_03745 24 0.5 Mlig455_040466

Neo: -

Age: -

 0.969 0.969 - - - - - Mlig455_040466 {REF} {Length: 527} {RNA1509_36949} {RNA1310_39753} {RNA815_48664}
43. MligTC455_23400 7 0.16 Mlig455_026159

Neo: -

Age: -

 AVPR1B 0.969 - - - - 0.969 - Mlig455_026159 {REF} {Length: 3115} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=105.2]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=29.5]} {Human: ENSG00000198049, AVPR1B, arginine vasopressin receptor 1B, [Score=114, Expect=8e-27]; ENSG00000187258, NPSR1, neuropeptide S receptor 1, [Score=110, Expect=2e-25]} {Mouse: ENSMUSG00000043659, Npsr1, neuropeptide S receptor 1, [Score=110, Expect=1e-25]; ENSMUSG00000020123, Avpr1a, arginine vasopressin receptor 1A, [Score=107, Expect=2e-24]} {Dmel: FBgn0039396, CCAP-R, Crustacean cardioactive peptide receptor, [Score=118, Expect=7e-28]} {Celegans: WBGene00015646, mlt-10, [Score=171, Expect=5e-45]} {Smed: dd_Smed_v6_35162_0_1, dd_Smed_v6_35162_0_1, [Score=110, Expect=4e-26]} {RNA1509_52929} {RNA1310_25125} {RNA815_32669}
44. MligTC455_44582 13 0.28 Mlig455_067754

Neo: Int S/G2/M

Age: -

 0.968 - 0.968 - - - - Mlig455_067754 {REF} {Length: 2342} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=141.5]} {RNA1310_22174} {RNA815_24783}
45. MligTC455_52340 34 0.71 Mlig455_012358, Mlig455_012736

Neo: -

Age: Up-Down-Up

 SCNN1B 0.968 - - - - 0.968 -

Mlig455_012358 {REF} {Length: 3412} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=180.9]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=58.9, Expect=2e-08]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=55.8, Expect=7e-08]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=404, Expect=3e-133]} {RNA1310_40062.1} {RNA815_16192}

Mlig455_012736 {REF} {Length: 3026} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=180.6]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=58.9, Expect=2e-08]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=55.8, Expect=7e-08]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=405, Expect=2e-133]} {RNA1310_40062.1} {RNA815_16192}
46. MligTC455_35900 11 0.24 Mlig455_006270, Mlig455_061215

Neo: Germline

Age: -

 GLRA1, GLRA2 0.967 - 0.967 - - - -

Mlig455_006270 {REF} {Length: 4313} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=56.3]} {Human: ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=74.7, Expect=1e-16]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=73.9, Expect=2e-16]; ENSG00000188828, GLRA4, glycine receptor alpha 4, [Score=73.6, Expect=2e-16]; ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=73.2, Expect=6e-17]; ENSG00000113327, GABRG2, gamma-aminobutyric acid type A receptor gamma2 subunit, [Score=72.0, Expect=7e-16]; ENSG00000145863, GABRA6, gamma-aminobutyric acid type A receptor alpha6 subunit, [Score=71.2, Expect=3e-16]} {Mouse: ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=74.3, Expect=1e-16]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=73.6, Expect=2e-16]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=72.8, Expect=2e-16]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=72.0, Expect=6e-16]; ENSMUSG00000020436, Gabrg2, gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2, [Score=72.0, Expect=5e-16]} {Dmel: FBgn0004244, Rdl, Resistant to dieldrin, [Score=79.0, Expect=1e-18]} {Celegans: WBGene00006784, unc-49, Ionotropic GABA receptor subunit UNC-49C, [Score=87.4, Expect=4e-23]} {Smed: dd_Smed_v6_24908_0_1, dd_Smed_v6_24908_0_1, [Score=67.4, Expect=1e-14]} {RNA1509_37141} {RNA1310_19618.1} {RNA815_7538}

Mlig455_061215 {REF} {Length: 584} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=97.4]} {Human: ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=105, Expect=7e-28]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=104, Expect=5e-26]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=104, Expect=8e-26]; ENSG00000188828, GLRA4, glycine receptor alpha 4, [Score=103, Expect=1e-25]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=104, Expect=7e-26]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=103, Expect=7e-26]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=103, Expect=8e-26]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=102, Expect=2e-25]; ENSMUSG00000055078, Gabra5, gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5, [Score=99.4, Expect=3e-24]} {Dmel: FBgn0004244, Rdl, Resistant to dieldrin, [Score=117, Expect=2e-30]} {Celegans: WBGene00006784, unc-49, Ionotropic GABA receptor subunit UNC-49C, [Score=127, Expect=3e-37]} {Smed: dd_Smed_v6_24908_0_1, dd_Smed_v6_24908_0_1, [Score=94.7, Expect=4e-23]} {RNA1310_57606} {RNA815_48912}
47. MligTC455_49968 129 2.69 Mlig455_068442

Neo: Germline

Age: -

Region-enriched R4: 4.953/0.00000

 KLHL10 0.966 0.966 - - - - - Mlig455_068442 {REF} {Length: 2499} {Pfam: Kelch motif [PF01344.27, score=127.4]; Kelch motif [PF13964.8, score=69.7]; Galactose oxidase, central domain [PF13415.8, score=53.7]; BTB And C-terminal Kelch [PF07707.17, score=52.4]; Kelch motif [PF07646.17, score=49.5]; Galactose oxidase, central domain [PF13418.8, score=45.8]; Kelch motif [PF13854.8, score=32.8]} {Human: ENSG00000161594, KLHL10, kelch like family member 10, [Score=154, Expect=4e-39]} {Mouse: ENSMUSG00000001558, Klhl10, kelch-like 10, [Score=156, Expect=7e-40]} {Dmel: FBgn0040038, klhl10, kelch like family member 10, [Score=143, Expect=3e-35]} {Celegans: WBGene00002185, kel-3, KELch-repeat containing protein, [Score=119, Expect=5e-28]} {Smed: dd_Smed_v6_5640_0_1, dd_Smed_v6_5640_0_1, [Score=118, Expect=1e-27]} {RNA1509_22564} {RNA1310_3065} {RNA815_17128.1}
48. MligTC455_13643 23 0.48 Mlig455_000634

Neo: Irradiation

Age: Up-Down-Down

 GRIA1 0.964 - 0.964 - - - - Mlig455_000634 {REF} {Length: 2919} {Pfam: Ligand-gated ion channel [PF00060.28, score=135.1]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=114.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=85.1]; Receptor family ligand binding region [PF01094.30, score=71.6]} {Human: ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=461, Expect=2e-148]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=457, Expect=2e-146]; ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=446, Expect=2e-142]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=444, Expect=2e-141]} {Mouse: ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=460, Expect=9e-148]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=457, Expect=1e-146]; ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=449, Expect=2e-143]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=444, Expect=3e-141]} {Dmel: FBgn0004619, GluRIA, Glutamate receptor IA, [Score=386, Expect=9e-119]} {Celegans: WBGene00001612, glr-1, Glutamate receptor 1, [Score=346, Expect=3e-104]} {Smed: dd_Smed_v6_17901_0_1, dd_Smed_v6_17901_0_1, [Score=492, Expect=4e-160]} {RNA1310_20413} {RNA815_63661}
49. MligTC455_40982 27 0.56 Mlig455_024039

Neo: -

Age: -

 SLC5A12 0.963 - - - - 0.963 - Mlig455_024039 {REF} {Length: 2246} {Pfam: Sodium:solute symporter family [PF00474.19, score=22.5]} {Human: ENSG00000148942, SLC5A12, solute carrier family 5 member 12, [Score=148, Expect=3e-39]} {Mouse: ENSMUSG00000041644, Slc5a12, solute carrier family 5 (sodium/glucose cotransporter), member 12, [Score=139, Expect=3e-36]; ENSMUSG00000020062, Slc5a8, solute carrier family 5 (iodide transporter), member 8, [Score=138, Expect=5e-36]} {Dmel: FBgn0031998, SLC5A11, Sodium/solute co-transporter-like 5A11, [Score=127, Expect=4e-32]} {Celegans: WBGene00014092, ZK822.5, [Score=99.0, Expect=8e-23]} {Smed: dd_Smed_v6_14173_0_1, dd_Smed_v6_14173_0_1, [Score=148, Expect=6e-40]} {RNA1509_39308, RNA1509_59448} {RNA1310_13571, RNA1509_39308} {RNA1509_39308, RNA815_16796}
50. MligTC455_03917 31 0.65 Mlig455_018938

Neo: -

Age: -

 0.962 0.962 - - - - - Mlig455_018938 {REF} {Length: 356} {NoTransDecoderORF} {RNA1509_12016} {RNA1310_130231} {RNA815_7574.1}
51. MligTC455_38304 6 0.12 Mlig455_056955

Neo: -

Age: Up-Down-Down

 0.962 - 0.962 - - - - Mlig455_056955 {REF} {Length: 2961} {RNA1509_42786} {RNA1310_18602.1} {RNA815_28181.1}
52. MligTC455_10474 25 0.51 Mlig455_031069

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.130

 0.96 - 0.960 - - - - Mlig455_031069 {REF} {Length: 1628} {RNA1509_14834} {RNA1310_20323} {RNA815_20717}
53. MligTC455_43774 24 0.51 Mlig455_040993

Neo: -

Age: -

 0.96 - 0.960 - - - - Mlig455_040993 {REF} {Length: 647} {NoTransDecoderORF} {RNA1310_120140}
54. MligTC455_10848 46 0.96 Mlig455_042721

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_042721 {REF} {Length: 589} {TRANSSPLICED} {RNA1509_14772} {RNA1310_8010} {RNA815_3364.2}
55. MligTC455_10849 55 1.14 Mlig455_042823

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_042823 {REF} {Length: 479} {NoTransDecoderORF}
56. MligTC455_13326 11 0.22 Mlig455_042702

Neo: -

Age: -

 0.959 - 0.959 - - - - Mlig455_042702 {REF} {Length: 4591} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=136.7]} {Smed: dd_Smed_v6_37545_0_1, dd_Smed_v6_37545_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_30877} {RNA1310_43502} {RNA815_38744}
57. MligTC455_04779 2 0.04 Mlig455_002022

Neo: -

Age: Down-Up-Down

 0.957 - 0.957 - - - - Mlig455_002022 {REF} {Length: 1496} {RNA1509_14149} {RNA1310_80598} {RNA815_41467.1}
58. MligTC455_29355 8 0.17 Mlig455_066666

Neo: -

Age: -

 0.954 - 0.954 - - - - Mlig455_066666 {REF} {Length: 2020} {RNA1509_14432, RNA1509_42417, RNA1509_43799} {RNA1310_1210, RNA1509_42417, RNA1509_43799} {RNA1509_42417, RNA1509_43799, RNA815_18995.1}
59. MligTC455_09967 35 0.73 Mlig455_036501

Neo: Germline

Age: Up-Down-Down

 FAM78A 0.953 - 0.953 - - - - Mlig455_036501 {REF} {Length: 2139} {Human: ENSG00000126882, FAM78A, family with sequence similarity 78 member A, [Score=54.3, Expect=1e-07]} {Mouse: ENSMUSG00000050592, Fam78a, family with sequence similarity 78, member A, [Score=53.9, Expect=1e-07]} {RNA1310_22983.1} {RNA815_35701}
60. MligTC455_17337 64 1.34 Mlig455_042423, Mlig455_059625

Neo: -

Age: -

Region-enriched R4: 3.764/0.01406

 0.953 0.953 - - - - -

Mlig455_042423 {REF} {Length: 1460} {NoTransDecoderORF} {RNA1509_18763} {RNA1310_8496.1, RNA1509_18763} {RNA1509_18763, RNA815_27961}

Mlig455_059625 {REF} {Length: 1284} {NoTransDecoderORF} {RNA1509_18763} {RNA1310_8496.1} {RNA815_27961}
61. MligTC455_20598 7 0.15 Mlig455_005714

Neo: -

Age: -

Region-enriched R4: 4.484/0.00481

 0.953 0.953 - - - - - Mlig455_005714 {REF} {Length: 402} {NoTransDecoderORF} {RNA1509_51849} {RNA1310_35988} {RNA815_26226.1}
62. MligTC455_16381 47 0.98 Mlig455_050273

Neo: Germline

Age: logFC(26M/2M)=0.599

 0.95 0.950 - - - - - Mlig455_050273 {REF} {Length: 6292} {Smed: dd_Smed_v6_66040_0_1, dd_Smed_v6_66040_0_1, [Score=56.2, Expect=6e-08]} {RNA1509_31995} {RNA1310_2330.1} {RNA815_11819}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA