M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41456

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41456 343 7.14 Mlig455_024247

Neo: -

Age: logFC(26M/2M)=0.411

 Mlig455_024247 {REF} {Length: 2044} {NoTransDecoderORF} {RNA1509_31967} {RNA1310_45510} {RNA815_32579.1}

Cumulative graph for MligTC455_41456

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.993 3.371 0.24295 0.88950
RegionR2 0.108 3.371 0.83951 1.00000
RegionR3 0.66 3.371 0.11301 0.58527
RegionR4 0.565 3.371 0.23933 0.53539
RegionR5 0.751 3.371 0.04418 0.17133
RegionR6 0.233 3.371 0.61223 1.00000
RegionR7 0.566 3.371 0.32239 0.95763
RegionR8 -0.889 3.371 0.32974 0.96281

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.559 3.371 0.46008 1.00000
RegenerationR2 0.507 3.371 0.14820 0.58129
RegenerationR3 -1.156 3.371 0.00562 0.13494
RegenerationR4 -0.89 3.371 0.03480 0.30110
RegenerationR5 -0.176 3.371 0.60582 0.91241
RegenerationR6 -0.168 3.371 0.70429 0.92690
RegenerationBL -0.724 3.371 0.32270 0.68955
RegenerationTP 0.568 3.371 0.38835 0.82157


Genes with expression patterns similar to MligTC455_41456

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41456 343 7.14 Mlig455_024247

Neo: -

Age: logFC(26M/2M)=0.411

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_024247 {REF} {Length: 2044} {NoTransDecoderORF} {RNA1509_31967} {RNA1310_45510} {RNA815_32579.1}
2. MligTC455_50309 756 15.76 Mlig455_009133

Neo: Irradiation

Age: logFC(26M/2M)=0.305

 SLC26A5 1.687 - - - 0.962 - 0.725 Mlig455_009133 {REF} {Length: 7468} {TRANSSPLICED} {Pfam: Sulfate permease family [PF00916.22, score=347.9]; STAS domain [PF01740.23, score=95.6]} {Human: ENSG00000170615, SLC26A5, solute carrier family 26 member 5, [RH, Score=433, Expect=1e-139]} {Mouse: ENSMUSG00000029015, Slc26a5, solute carrier family 26, member 5, [RH, Score=444, Expect=8e-144]} {Dmel: FBgn0036770, Prestin, [RH, Score=363, Expect=3e-113]} {Celegans: WBGene00020914, sulp-6, SULfate Permease family, [RH, Score=375, Expect=5e-117]} {Smed: dd_Smed_v6_4250_0_2, dd_Smed_v6_4250_0_2, [Score=470, Expect=3e-154]} {RNA1509_33426, RNA1509_33898, RNA1509_9370} {RNA1310_7265, RNA1509_33426, RNA1509_33898, RNA1509_9370} {RNA1509_33426, RNA1509_33898, RNA1509_9370, RNA815_2295}
3. MligTC455_25480 454 9.45 Mlig455_002934

Neo: -

Age: -

 ITK 0.976 - - - - - 0.976 Mlig455_002934 {REF} {Length: 6820} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=267.9]; Protein kinase domain [PF00069.27, score=133.8]; SH2 domain [PF00017.26, score=77.3]; PH domain [PF00169.31, score=32.0]; Variant SH3 domain [PF14604.8, score=28.5]; SH3 domain [PF00018.30, score=27.5]; BTK motif [PF00779.21, score=24.1]; SH3 domain [PF17902.3, score=18.6]} {Human: ENSG00000113263, ITK, IL2 inducible T cell kinase, [Score=432, Expect=5e-143]; ENSG00000010671, BTK, Bruton tyrosine kinase, [Score=427, Expect=2e-140]; ENSG00000135605, TEC, tec protein tyrosine kinase, [Score=416, Expect=2e-136]} {Mouse: ENSMUSG00000020395, Itk, IL2 inducible T cell kinase, [RH, Score=420, Expect=3e-138]} {Dmel: FBgn0003502, Btk29A, Btk family kinase at 29A, [RH, Score=451, Expect=2e-148]} {Celegans: WBGene00005077, src-1, Tyrosine protein-kinase src-1, [Score=294, Expect=7e-92]} {Smed: dd_Smed_v6_4818_0_1, dd_Smed_v6_4818_0_1, [RH, Score=641, Expect=0.0]} {RNA1509_14892} {RNA1310_2046, RNA1509_14892} {RNA1509_14892, RNA815_350}
4. MligTC455_32811 764 15.92 Mlig455_026793, Mlig455_051806

Neo: -

Age: -

 RAB43 0.973 - - - - - 0.973

Mlig455_026793 {REF} {Length: 2681} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=49.5]; AAA domain [PF13401.8, score=19.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.8]; 50S ribosome-binding GTPase [PF01926.25, score=18.7]} {Human: ENSG00000172780, RAB43, RAB43, member RAS oncogene family, [RH, Score=248, Expect=1e-83]} {Mouse: ENSMUSG00000030055, Rab43, RAB43, member RAS oncogene family, [RH, Score=238, Expect=4e-80]} {Dmel: FBgn0015793, Rab19, [RH, Score=224, Expect=2e-74]} {Celegans: WBGene00004278, rab-19, RAB family, [RH, Score=231, Expect=1e-77]} {Smed: dd_Smed_v6_2494_0_1, dd_Smed_v6_2494_0_1, [RH, Score=276, Expect=2e-95]} {RNA1509_22843} {RNA1310_16768, RNA1509_22843} {RNA1509_22843, RNA815_20284}

Mlig455_051806 {REF} {Length: 2724} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.7]; ADP-ribosylation factor family [PF00025.23, score=49.5]; AAA domain [PF13401.8, score=19.5]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.8]; 50S ribosome-binding GTPase [PF01926.25, score=18.7]} {Human: ENSG00000172780, RAB43, RAB43, member RAS oncogene family, [RH, Score=247, Expect=3e-83]} {Mouse: ENSMUSG00000030055, Rab43, RAB43, member RAS oncogene family, [RH, Score=238, Expect=9e-80]} {Dmel: FBgn0015793, Rab19, [RH, Score=223, Expect=3e-74]} {Celegans: WBGene00004278, rab-19, RAB family, [RH, Score=229, Expect=7e-77]} {Smed: dd_Smed_v6_2494_0_1, dd_Smed_v6_2494_0_1, [RH, Score=275, Expect=7e-95]} {RNA1509_22843, RNA1509_39313} {RNA1310_16768, RNA1509_39313} {RNA1509_39313, RNA815_20284}
5. MligTC455_36008 404 8.41 Mlig455_055395

Neo: -

Age: logFC(26M/2M)=0.738

 0.973 - - - - - 0.973 Mlig455_055395 {REF} {Length: 2036} {RNA1509_14528} {RNA1310_31437} {RNA815_14226}
6. MligTC455_52754 596 12.43 Mlig455_023465

Neo: -

Age: logFC(26M/2M)=-0.306

Region-enriched R5: 1.154/0.01420

 PPP1R7 0.971 - - - - - 0.971 Mlig455_023465 {REF} {Length: 2714} {TRANSSPLICED} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=121.9]; Leucine-rich repeat [PF14580.8, score=86.4]; Leucine rich repeat [PF13855.8, score=69.4]; Leucine Rich repeat [PF13516.8, score=18.9]} {Human: ENSG00000115685, PPP1R7, protein phosphatase 1 regulatory subunit 7, [RH, Score=285, Expect=1e-94]} {Mouse: ENSMUSG00000026275, Ppp1r7, protein phosphatase 1, regulatory subunit 7, [RH, Score=281, Expect=6e-93]} {Dmel: FBgn0028992, sds22, [RH, Score=245, Expect=2e-79]} {Celegans: WBGene00011637, sds-22, Protein phosphatase 1 regulatory subunit SDS22 homolog, [RH, Score=236, Expect=4e-76]} {Smed: dd_Smed_v6_5405_0_1, dd_Smed_v6_5405_0_1, [RH, Score=303, Expect=3e-102]} {RNA1509_7839} {RNA1310_12388.1, RNA1509_7839} {RNA1509_7839, RNA815_5565.1}
7. MligTC455_42048 333 6.94 Mlig455_027137

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_027137 {REF} {Length: 1224} {Pfam: CUE domain [PF02845.18, score=19.0]} {RNA1509_54789} {RNA1310_19777} {RNA815_7846}
8. MligTC455_16477 427 8.9 Mlig455_042989

Neo: -

Age: Down-Up-Down

 ARF6 0.951 - - - - - 0.951 Mlig455_042989 {REF} {Length: 1208} {TRANSSPLICED} {Pfam: ADP-ribosylation factor family [PF00025.23, score=111.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=22.3]; 6-phosphofructo-2-kinase [PF01591.20, score=18.8]} {Human: ENSG00000165527, ARF6, ADP ribosylation factor 6, [Score=148, Expect=7e-46]} {Mouse: ENSMUSG00000044147, Arf6, ADP-ribosylation factor 6, [Score=148, Expect=5e-46]} {Dmel: FBgn0013750, Arf51F, ADP ribosylation factor at 51F, [Score=149, Expect=1e-46]} {Celegans: WBGene00000184, arf-6, ADP-Ribosylation Factor related, [Score=142, Expect=7e-44]} {Smed: dd_Smed_v6_2125_0_1, dd_Smed_v6_2125_0_1, [Score=135, Expect=2e-41]} {RNA1509_12815} {RNA1310_25955} {RNA815_11670.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA