M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41539

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41539 720 14.99 Mlig455_016675, Mlig455_056342

Neo: -

Age: -

 SNW1

Mlig455_016675 {REF} {Length: 2809} {Pfam: SKIP/SNW domain [PF02731.17, score=220.0]} {Human: ENSG00000100603, SNW1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Mouse: ENSMUSG00000021039, Snw1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Dmel: FBgn0004856, Bx42, [RH, Score=471, Expect=9e-162]} {Celegans: WBGene00004806, skp-1, mammalian SKIP (Ski interacting protein) homolog, [RH, Score=395, Expect=5e-132]} {Smed: dd_Smed_v6_2325_0_1, dd_Smed_v6_2325_0_1, [RH, Score=342, Expect=7e-113]} {RNA1509_6755} {RNA1310_12702} {RNA815_5214}

Mlig455_056342 {REF} {Length: 3983} {Pfam: SKIP/SNW domain [PF02731.17, score=220.0]} {Human: ENSG00000100603, SNW1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Mouse: ENSMUSG00000021039, Snw1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Dmel: FBgn0004856, Bx42, [RH, Score=471, Expect=9e-162]} {Celegans: WBGene00004806, skp-1, mammalian SKIP (Ski interacting protein) homolog, [RH, Score=395, Expect=5e-132]} {Smed: dd_Smed_v6_2325_0_1, dd_Smed_v6_2325_0_1, [RH, Score=342, Expect=7e-113]} {RNA1509_29838, RNA1509_48695, RNA1509_6755} {RNA1310_12702, RNA1509_29838, RNA1509_48695, RNA1509_6755} {RNA1509_29838, RNA1509_48695, RNA1509_6755, RNA815_5214}

Cumulative graph for MligTC455_41539

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.578 4.3 0.56793 1.00000
RegionR2 -0.068 4.3 0.89530 1.00000
RegionR3 -0.097 4.3 0.80461 1.00000
RegionR4 0.831 4.3 0.09229 0.29142
RegionR5 0.383 4.3 0.27625 0.60280
RegionR6 -0.011 4.3 0.97566 1.00000
RegionR7 -0.787 4.3 0.13470 0.69030
RegionR8 -0.831 4.3 0.18929 0.78006

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.505 4.3 0.13393 0.86883
RegenerationR2 0.018 4.3 0.97079 1.00000
RegenerationR3 -0.446 4.3 0.37569 0.78744
RegenerationR4 -0.466 4.3 0.35431 0.78352
RegenerationR5 -0.309 4.3 0.50451 0.86078
RegenerationR6 -0.441 4.3 0.39986 0.73723
RegenerationBL 0.666 4.3 0.27182 0.63166
RegenerationTP 0.884 4.3 0.15847 0.58627


Genes with expression patterns similar to MligTC455_41539

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41539 720 14.99 Mlig455_016675, Mlig455_056342

Neo: -

Age: -

 SNW1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_016675 {REF} {Length: 2809} {Pfam: SKIP/SNW domain [PF02731.17, score=220.0]} {Human: ENSG00000100603, SNW1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Mouse: ENSMUSG00000021039, Snw1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Dmel: FBgn0004856, Bx42, [RH, Score=471, Expect=9e-162]} {Celegans: WBGene00004806, skp-1, mammalian SKIP (Ski interacting protein) homolog, [RH, Score=395, Expect=5e-132]} {Smed: dd_Smed_v6_2325_0_1, dd_Smed_v6_2325_0_1, [RH, Score=342, Expect=7e-113]} {RNA1509_6755} {RNA1310_12702} {RNA815_5214}

Mlig455_056342 {REF} {Length: 3983} {Pfam: SKIP/SNW domain [PF02731.17, score=220.0]} {Human: ENSG00000100603, SNW1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Mouse: ENSMUSG00000021039, Snw1, SNW domain containing 1, [RH, Score=526, Expect=0.0]} {Dmel: FBgn0004856, Bx42, [RH, Score=471, Expect=9e-162]} {Celegans: WBGene00004806, skp-1, mammalian SKIP (Ski interacting protein) homolog, [RH, Score=395, Expect=5e-132]} {Smed: dd_Smed_v6_2325_0_1, dd_Smed_v6_2325_0_1, [RH, Score=342, Expect=7e-113]} {RNA1509_29838, RNA1509_48695, RNA1509_6755} {RNA1310_12702, RNA1509_29838, RNA1509_48695, RNA1509_6755} {RNA1509_29838, RNA1509_48695, RNA1509_6755, RNA815_5214}
2. MligTC455_37401 592 12.33 Mlig455_056107

Neo: -

Age: logFC(26M/2M)=-0.696

 0.971 - - - - - 0.971 Mlig455_056107 {REF} {Length: 2111} {RNA1509_30010} {RNA1310_55937, RNA1509_30010} {RNA1509_30010, RNA815_28707}
3. MligTC455_48075 1238 25.79 Mlig455_022548, Mlig455_025481

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.762

 RNF185 0.959 - - - - - 0.959

Mlig455_022548 {REF} {Length: 1606} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=40.4]; RING-type zinc-finger [PF13445.8, score=39.4]; Ring finger domain [PF13639.8, score=37.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=34.5]; Prokaryotic RING finger family 4 [PF14447.8, score=32.0]; zinc-RING finger domain [PF14634.8, score=31.6]; zinc finger of C3HC4-type, RING [PF15227.8, score=30.8]; RING-H2 zinc finger domain [PF12678.9, score=23.5]; Baculovirus immediate-early protein (IE-0) [PF05290.13, score=21.5]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=21.4]} {Human: ENSG00000138942, RNF185, ring finger protein 185, [RH, Score=166, Expect=9e-52]; ENSG00000183574, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000204308, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000225452, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000223767, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000228405, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000227277, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000228907, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]} {Mouse: ENSMUSG00000020448, Rnf185, ring finger protein 185, [RH, Score=170, Expect=2e-53]; ENSMUSG00000015478, Rnf5, ring finger protein 5, [RH, Score=163, Expect=3e-51]} {Dmel: FBgn0030693, CG8974, [RH, Score=152, Expect=9e-46]} {Celegans: WBGene00004381, rnf-5, RING finger protein 5, [RH, Score=134, Expect=1e-39]} {Smed: dd_Smed_v6_5004_0_1, dd_Smed_v6_5004_0_1, [RH, Score=167, Expect=1e-52]} {RNA1509_12431} {RNA1310_12532.1} {RNA815_8137.1}

Mlig455_025481 {REF} {Length: 1606} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=40.4]; RING-type zinc-finger [PF13445.8, score=39.4]; Ring finger domain [PF13639.8, score=37.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=34.5]; Prokaryotic RING finger family 4 [PF14447.8, score=32.0]; zinc-RING finger domain [PF14634.8, score=31.6]; zinc finger of C3HC4-type, RING [PF15227.8, score=30.8]; RING-H2 zinc finger domain [PF12678.9, score=23.5]; Baculovirus immediate-early protein (IE-0) [PF05290.13, score=21.5]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=21.4]} {Human: ENSG00000138942, RNF185, ring finger protein 185, [RH, Score=166, Expect=9e-52]; ENSG00000183574, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000204308, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000225452, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000223767, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000228405, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000227277, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]; ENSG00000228907, RNF5, ring finger protein 5, [RH, Score=161, Expect=3e-50]} {Mouse: ENSMUSG00000020448, Rnf185, ring finger protein 185, [RH, Score=170, Expect=2e-53]; ENSMUSG00000015478, Rnf5, ring finger protein 5, [RH, Score=163, Expect=3e-51]} {Dmel: FBgn0030693, CG8974, [RH, Score=152, Expect=9e-46]} {Celegans: WBGene00004381, rnf-5, RING finger protein 5, [RH, Score=134, Expect=1e-39]} {Smed: dd_Smed_v6_5004_0_1, dd_Smed_v6_5004_0_1, [RH, Score=167, Expect=1e-52]} {RNA1509_12431, RNA1509_35586, RNA1509_38566} {RNA1310_12532.1, RNA1509_35586, RNA1509_38566} {RNA1509_35586, RNA1509_38566, RNA815_8137.1}
4. MligTC455_44856 448 9.34 Mlig455_019301

Neo: -

Age: -

 B3GAT3 0.955 - - - - - 0.955 Mlig455_019301 {REF} {Length: 1713} {TRANSSPLICED} {Pfam: Glycosyltransferase family 43 [PF03360.18, score=205.8]} {Human: ENSG00000149541, B3GAT3, beta-1,3-glucuronyltransferase 3, [RH, Score=243, Expect=3e-78]; ENSG00000109956, B3GAT1, beta-1,3-glucuronyltransferase 1, [RH, Score=241, Expect=2e-77]} {Mouse: ENSMUSG00000071649, B3gat3, beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I), [RH, Score=245, Expect=4e-79]; ENSMUSG00000045994, B3gat1, beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P), [RH, Score=240, Expect=3e-77]} {Dmel: FBgn0066114, GlcAT-I, [RH, Score=208, Expect=3e-65]} {Celegans: WBGene00005026, sqv-8, Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase sqv-8, [RH, Score=206, Expect=6e-64]} {Smed: dd_Smed_v6_9931_0_1, dd_Smed_v6_9931_0_1, [RH, Score=257, Expect=1e-84]} {RNA1509_17976} {RNA1310_31341.1} {RNA815_14950}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA