TomoSeq data search

Data search

Results for MligTC455_42182

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_42182	394	8.21	Mlig455_056803, Mlig455_056841	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.803 Region-enriched R4: 2.099/0.01008		Mlig455_056803 {REF} {Length: 977} {Pfam: Aminoacyl-tRNA editing domain [PF04073.17, score=57.3]} {Mouse: ENSMUSG00000032673, Prorsd1, prolyl-tRNA synthetase domain containing 1, [RH, Score=123, Expect=1e-35]} {RNA1509_29724} {RNA1310_52200} {RNA815_26517} Mlig455_056841 {REF} {Length: 683} {TRANSSPLICED} {Pfam: Aminoacyl-tRNA editing domain [PF04073.17, score=58.6]} {Mouse: ENSMUSG00000032673, Prorsd1, prolyl-tRNA synthetase domain containing 1, [RH, Score=124, Expect=7e-36]} {RNA1310_52200} {RNA815_26517}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_42182

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.884	3.564	0.41583	1.00000
RegionR2	-0.604	3.564	0.45327	0.84071
RegionR3	0.388	3.564	0.49902	0.99420
RegionR4	2.099	3.564	0.00096	0.01008
RegionR5	-0.329	3.564	0.62681	0.98047
RegionR6	0.033	3.564	0.94769	1.00000
RegionR7	-0.011	3.564	0.99782	1.00000
RegionR8	0.309	3.564	0.71722	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-4.115	3.564	0.55223	1.00000
RegenerationR2	0.286	3.564	0.60101	0.91599
RegenerationR3	0.18	3.564	0.76659	0.97018
RegenerationR4	-0.132	3.564	0.81421	0.99111
RegenerationR5	1.128	3.564	0.04674	0.35045
RegenerationR6	0.107	3.564	0.86180	1.00000
RegenerationBL	0.282	3.564	0.67266	1.00000
RegenerationTP	-0.866	3.564	0.28651	0.73301

Genes with expression patterns similar to MligTC455_42182

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_42182	394	8.21	Mlig455_056803, Mlig455_056841	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.803 Region-enriched R4: 2.099/0.01008		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_056803 {REF} {Length: 977} {Pfam: Aminoacyl-tRNA editing domain [PF04073.17, score=57.3]} {Mouse: ENSMUSG00000032673, Prorsd1, prolyl-tRNA synthetase domain containing 1, [RH, Score=123, Expect=1e-35]} {RNA1509_29724} {RNA1310_52200} {RNA815_26517} Mlig455_056841 {REF} {Length: 683} {TRANSSPLICED} {Pfam: Aminoacyl-tRNA editing domain [PF04073.17, score=58.6]} {Mouse: ENSMUSG00000032673, Prorsd1, prolyl-tRNA synthetase domain containing 1, [RH, Score=124, Expect=7e-36]} {RNA1310_52200} {RNA815_26517}
2.	MligTC455_38102	357	7.44	Mlig455_044855	Neo: - Age: -	PABPC4	1.706	-	-	0.961	-	0.745	-	Mlig455_044855 {REF} {Length: 2615} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=72.4]} {Human: ENSG00000090621, PABPC4, poly(A) binding protein cytoplasmic 4, [Score=72.8, Expect=4e-14]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=70.5, Expect=2e-13]; ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=70.1, Expect=2e-13]} {Mouse: ENSMUSG00000003410, Elavl3, ELAV like RNA binding protein 3, [Score=94.0, Expect=1e-22]} {Dmel: FBgn0010263, Rbp9, RNA-binding protein 9, [Score=94.0, Expect=1e-21]} {Celegans: WBGene00001368, exc-7, [Score=81.6, Expect=1e-17]} {Smed: dd_Smed_v6_10994_0_1, dd_Smed_v6_10994_0_1, [Score=52.8, Expect=4e-08]} {RNA1509_12117} {RNA1310_20351.1} {RNA815_17342}
3.	MligTC455_23156	88	1.83	Mlig455_048448	Neo: - Age: -		0.95	-	-	-	0.950	-	-	Mlig455_048448 {REF} {Length: 3286} {TRANSSPLICED} {Pfam: KH domain [PF00013.31, score=26.5]; Eukaryotic translation initiation factor 2 alpha subunit [PF07541.14, score=24.8]} {RNA1509_17687} {RNA1310_16014.1} {RNA815_8001}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_42182

394

8.21

Mlig455_056803, Mlig455_056841

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.803

Region-enriched R4: 2.099/0.01008

1.000

MligTC455_38102

357

7.44

Mlig455_044855

Neo: -

Age: -

PABPC4

1.706

0.961

0.745

Mlig455_044855 {REF} {Length: 2615} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=72.4]} {Human: ENSG00000090621, PABPC4, poly(A) binding protein cytoplasmic 4, [Score=72.8, Expect=4e-14]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=70.5, Expect=2e-13]; ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=70.1, Expect=2e-13]} {Mouse: ENSMUSG00000003410, Elavl3, ELAV like RNA binding protein 3, [Score=94.0, Expect=1e-22]} {Dmel: FBgn0010263, Rbp9, RNA-binding protein 9, [Score=94.0, Expect=1e-21]} {Celegans: WBGene00001368, exc-7, [Score=81.6, Expect=1e-17]} {Smed: dd_Smed_v6_10994_0_1, dd_Smed_v6_10994_0_1, [Score=52.8, Expect=4e-08]} {RNA1509_12117} {RNA1310_20351.1} {RNA815_17342}

MligTC455_23156

1.83

Mlig455_048448

Neo: -

Age: -

0.95

0.950

Mlig455_048448 {REF} {Length: 3286} {TRANSSPLICED} {Pfam: KH domain [PF00013.31, score=26.5]; Eukaryotic translation initiation factor 2 alpha subunit [PF07541.14, score=24.8]} {RNA1509_17687} {RNA1310_16014.1} {RNA815_8001}