M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_42212

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42212 384 7.99 Mlig455_066820

Neo: -

Age: Down-Up-Down

 Mlig455_066820 {REF} {Length: 865} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=120.7]} {Dmel: FBgn0034583, CG10527, [Score=94.0, Expect=4e-23]} {Smed: dd_Smed_v6_766_0_1, dd_Smed_v6_766_0_1, [Score=127, Expect=1e-37]} {RNA1509_43893} {RNA1310_49421} {RNA815_24671}

Cumulative graph for MligTC455_42212

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.134 3.351 0.45469 1.00000
RegionR2 0.639 3.351 0.34191 0.73413
RegionR3 0.266 3.351 0.63689 1.00000
RegionR4 0.47 3.351 0.55840 0.87839
RegionR5 -0.69 3.351 0.25884 0.57882
RegionR6 -1.601 3.351 0.01941 0.25076
RegionR7 -0.34 3.351 0.66508 1.00000
RegionR8 0.122 3.351 0.89257 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.979 3.351 0.12904 0.86144
RegenerationR2 -0.847 3.351 0.16006 0.59730
RegenerationR3 -0.893 3.351 0.18961 0.62479
RegenerationR4 -0.272 3.351 0.72254 0.96222
RegenerationR5 -0.228 3.351 0.75282 0.97245
RegenerationR6 0.897 3.351 0.25131 0.60101
RegenerationBL 0.366 3.351 0.63075 0.97200
RegenerationTP 0.97 3.351 0.22199 0.66533


Genes with expression patterns similar to MligTC455_42212

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42212 384 7.99 Mlig455_066820

Neo: -

Age: Down-Up-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_066820 {REF} {Length: 865} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=120.7]} {Dmel: FBgn0034583, CG10527, [Score=94.0, Expect=4e-23]} {Smed: dd_Smed_v6_766_0_1, dd_Smed_v6_766_0_1, [Score=127, Expect=1e-37]} {RNA1509_43893} {RNA1310_49421} {RNA815_24671}
2. MligTC455_27901 200 4.17 Mlig455_028860

Neo: -

Age: -

 RNF213 1.816 - - - 0.841 - 0.975 Mlig455_028860 {REF} {Length: 7501} {Human: ENSG00000173821, RNF213, ring finger protein 213, [Score=81.6, Expect=2e-15]} {Mouse: ENSMUSG00000070327, Rnf213, ring finger protein 213, [Score=72.8, Expect=7e-13]} {RNA1509_4697} {RNA1310_300.1} {RNA815_205.1}
3. MligTC455_18501 200 4.16 Mlig455_031954

Neo: -

Age: Down-Up-Up

 1.774 - - - 0.809 - 0.965 Mlig455_031954 {REF} {Length: 1030} {RNA1509_49054} {RNA1310_32906} {RNA815_15169}
4. MligTC455_52093 200 4.17 Mlig455_026940, Mlig455_027028, Mlig455_027091

Neo: -

Age: -

 1.765 - - - 0.796 - 0.969

Mlig455_026940 {REF} {Length: 2010} {RNA1310_29141} {RNA815_58200}

Mlig455_027028 {REF} {Length: 1107} {NoTransDecoderORF} {RNA1310_29141} {RNA815_58200}

Mlig455_027091 {REF} {Length: 1224} {RNA1310_29141} {RNA815_58200}
5. MligTC455_18500 1471 30.65 Mlig455_031869

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.532

Region-enriched R2: 1.314/0.00526

Regeneration-downregulated BL: -2.252

Regeneration-depleted BL: -2.252

 1.764 - - - 0.811 - 0.953 Mlig455_031869 {REF} {Length: 3516} {RNA1509_12038, RNA1509_15832, RNA1509_26696, RNA1509_30104, RNA1509_49054} {RNA1310_23818, RNA1509_12038, RNA1509_15832, RNA1509_26696, RNA1509_30104, RNA1509_49054} {RNA1509_12038, RNA1509_15832, RNA1509_26696, RNA1509_30104, RNA1509_49054, RNA815_15169}
6. MligTC455_13133 156 3.25 Mlig455_050951

Neo: -

Age: Down-Up-Up

 1.751 0.795 - - - - 0.956 Mlig455_050951 {REF} {Length: 1819} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=20.3]} {Smed: dd_Smed_v6_12135_0_1, dd_Smed_v6_12135_0_1, [RH, Score=133, Expect=2e-35]} {RNA1310_21001} {RNA815_15159}
7. MligTC455_48061 590 12.29 Mlig455_000203

Neo: -

Age: Down-Down-Up

 1.748 - - - 0.792 - 0.956 Mlig455_000203 {REF} {Length: 963} {RNA1509_42285, RNA1509_52921} {RNA1310_38575, RNA1509_52921}
8. MligTC455_48036 1027 21.39 Mlig455_012548, Mlig455_070223

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.388

 1.729 0.763 - - - - 0.966

Mlig455_012548 {REF} {Length: 2455} {Pfam: Innexin [PF00876.20, score=196.2]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=128, Expect=3e-33]} {Smed: dd_Smed_v6_692_0_1, dd_Smed_v6_692_0_1, [Score=128, Expect=4e-33]} {RNA1509_18991} {RNA1310_13499.1} {RNA815_8470}

Mlig455_070223 {REF} {Length: 2373} {Pfam: Innexin [PF00876.20, score=197.3]} {Dmel: FBgn0085387, shakB, shaking B, [Score=47.4, Expect=1e-05]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=128, Expect=4e-33]} {Smed: dd_Smed_v6_692_0_1, dd_Smed_v6_692_0_1, [Score=130, Expect=1e-33]} {RNA1509_18991} {RNA1310_13499.1, RNA1509_18991} {RNA1509_18991, RNA815_8470}
9. MligTC455_41173 89 1.85 Mlig455_012423

Neo: -

Age: -

 1.704 - - - - 0.742 0.962 Mlig455_012423 {REF} {Length: 2142} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=22.2]} {RNA1509_43208} {RNA1310_19732} {RNA815_10956}
10. MligTC455_34002 403 8.39 Mlig455_042149

Neo: -

Age: logFC(26M/2M)=-0.403

 1.676 - - - 0.703 - 0.973 Mlig455_042149 {REF} {Length: 1110} {RNA1509_23831, RNA1509_42660} {RNA1310_22331, RNA1509_42660} {RNA1509_42660, RNA815_2397.1}
11. MligTC455_39861 264 5.5 Mlig455_059014

Neo: -

Age: -

 1.666 - - 0.712 - - 0.954 Mlig455_059014 {REF} {Length: 2813} {TRANSSPLICED} {RNA1509_22951} {RNA1310_7946} {RNA815_4282}
12. MligTC455_18036 165 3.45 Mlig455_019729

Neo: -

Age: -

 0.976 - - - - - 0.976 Mlig455_019729 {REF} {Length: 788} {NoTransDecoderORF} {RNA1509_37916} {RNA1310_24367} {RNA815_40336}
13. MligTC455_34370 439 9.15 Mlig455_008867, Mlig455_008966

Neo: Neoblast

Age: -

 0.972 - - - - 0.972 -

Mlig455_008867 {REF} {Length: 2081} {TRANSSPLICED} {RNA1509_17540} {RNA1310_12872, RNA1509_17540} {RNA1509_17540, RNA815_8849}

Mlig455_008966 {REF} {Length: 2081} {TRANSSPLICED} {RNA1509_17540, RNA1509_27398, RNA1509_40401} {RNA1310_12872, RNA1509_27398, RNA1509_40401} {RNA1509_27398, RNA1509_40401, RNA815_8849}
14. MligTC455_15610 221 4.6 Mlig455_053951

Neo: -

Age: logFC(26M/2M)=0.556

 GOLT1A 0.971 - - - - - 0.971 Mlig455_053951 {REF} {Length: 1127} {Pfam: Got1/Sft2-like family [PF04178.14, score=58.1]} {Human: ENSG00000174567, GOLT1A, golgi transport 1A, [RH, Score=119, Expect=3e-35]} {Mouse: ENSMUSG00000103421, Golt1a, golgi transport 1A, [RH, Score=125, Expect=1e-37]; ENSMUSG00000098306, Gm28040, predicted gene, 28040, [RH, Score=125, Expect=1e-37]} {Dmel: FBgn0052576, CG32576, [RH, Score=132, Expect=2e-40]} {Celegans: WBGene00018270, F41C3.4, Probable Golgi transport protein 1, [RH, Score=114, Expect=2e-33]} {Smed: dd_Smed_v6_5105_0_1, dd_Smed_v6_5105_0_1, [RH, Score=139, Expect=2e-43]} {RNA1509_27476} {RNA1310_33388} {RNA815_14613}
15. MligTC455_15611 451 9.39 Mlig455_060587, Mlig455_060628

Neo: -

Age: -

Regeneration-downregulated BL: -7.473

Regeneration-depleted BL: -7.473

 0.968 - - - - - 0.968

Mlig455_060587 {REF} {Length: 2766} {Pfam: Protein of unknown function (DUF3847) [PF12958.9, score=27.6]} {RNA1509_45592} {RNA1310_33388} {RNA815_14613}

Mlig455_060628 {REF} {Length: 1029} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59624} {RNA1310_33388} {RNA815_14613}
16. MligTC455_49314 123 2.57 Mlig455_001336

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.376

 SLC24A3 0.963 - - - - - 0.963 Mlig455_001336 {REF} {Length: 2578} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=176.2]} {Human: ENSG00000185052, SLC24A3, solute carrier family 24 member 3, [RH, Score=424, Expect=7e-140]} {Mouse: ENSMUSG00000063873, Slc24a3, solute carrier family 24 (sodium/potassium/calcium exchanger), member 3, [RH, Score=419, Expect=7e-139]} {Dmel: FBgn0037238, CG1090, [Score=383, Expect=2e-124]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [RH, Score=314, Expect=1e-98]} {Smed: dd_Smed_v6_7121_0_1, dd_Smed_v6_7121_0_1, [Score=436, Expect=4e-147]} {RNA1509_8142} {RNA1310_7488} {RNA815_3083.1}
17. MligTC455_47226 202 4.22 Mlig455_012306

Neo: -

Age: -

Region-enriched R4: 2.582/0.02845

 0.962 - - - - - 0.962 Mlig455_012306 {REF} {Length: 1104} {Celegans: WBGene00021577, Y46B2A.2, [Score=45.4, Expect=8e-07]} {Smed: dd_Smed_v6_49255_0_1, dd_Smed_v6_49255_0_1, [Score=44.3, Expect=3e-07]} {RNA1509_48023} {RNA1310_18058} {RNA815_356.1}
18. MligTC455_41120 338 7.04 Mlig455_010484, Mlig455_061893

Neo: -

Age: -

 0.96 - - - - - 0.960

Mlig455_010484 {REF} {Length: 2728} {Pfam: IQ calmodulin-binding motif [PF00612.29, score=23.0]} {RNA1509_25340} {RNA1310_12143.1, RNA1509_25340} {RNA1509_25340, RNA815_11094}

Mlig455_061893 {REF} {Length: 2795} {Pfam: IQ calmodulin-binding motif [PF00612.29, score=22.9]} {RNA1509_25340} {RNA1310_12143.1} {RNA815_11094}
19. MligTC455_26844 103 2.16 Mlig455_015617, Mlig455_069803

Neo: -

Age: -

 0.953 - - - - - 0.953

Mlig455_015617 {REF} {Length: 1071} {Celegans: WBGene00019136, F59H6.5, [Score=90.9, Expect=1e-19]} {RNA1509_13878} {RNA1310_8770} {RNA815_4829.1}

Mlig455_069803 {REF} {Length: 6022} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=176.0]} {Celegans: WBGene00022692, ZK250.9, [Score=281, Expect=9e-82]} {RNA1509_18422} {RNA1310_8770, RNA1509_18422} {RNA1509_18422, RNA815_4829.1}
20. MligTC455_46251 416 8.67 Mlig455_018602, Mlig455_018616

Neo: -

Age: Down-Up-Down

 0.953 - - - - - 0.953

Mlig455_018602 {REF} {Length: 2125} {TRANSSPLICED} {RNA1509_38360} {RNA1310_20819.1} {RNA815_16997}

Mlig455_018616 {REF} {Length: 2099} {TRANSSPLICED} {RNA1509_38360} {RNA1310_20819.1, RNA1509_38360} {RNA1509_38360, RNA815_16997}
21. MligTC455_13280 164 3.42 Mlig455_042501

Neo: -

Age: Down-Up-Down

 0.951 - - - - - 0.951 Mlig455_042501 {REF} {Length: 3811} {Pfam: Caspase domain [PF00656.24, score=30.2]} {RNA1509_43988} {RNA1310_8586} {RNA815_7730.1}
22. MligTC455_14191 152 3.16 Mlig455_034455, Mlig455_066219

Neo: -

Age: -

 LDB2 0.951 - - - - - 0.951

Mlig455_034455 {REF} {Length: 5344} {Pfam: LIM-domain binding protein [PF01803.18, score=145.1]; LIM interaction domain (LID) [PF17916.3, score=61.7]} {Human: ENSG00000169744, LDB2, LIM domain binding 2, [RH, Score=400, Expect=8e-133]; ENSG00000198728, LDB1, LIM domain binding 1, [RH, Score=381, Expect=4e-125]} {Mouse: ENSMUSG00000039706, Ldb2, LIM domain binding 2, [RH, Score=398, Expect=7e-132]; ENSMUSG00000025223, Ldb1, LIM domain binding 1, [RH, Score=381, Expect=3e-125]} {Dmel: FBgn0013764, Chi, Chip, [RH, Score=352, Expect=1e-111]} {Celegans: WBGene00002261, ldb-1, F58A3.1a; LIM Domain Binding protein, [RH, Score=155, Expect=1e-39]} {Smed: dd_Smed_v6_3678_0_1, dd_Smed_v6_3678_0_1, [RH, Score=365, Expect=1e-116]} {RNA1509_38395, RNA1509_53926} {RNA1310_9608.1, RNA1509_38395, RNA1509_53926} {RNA1509_38395, RNA1509_53926, RNA815_20796}

Mlig455_066219 {REF} {Length: 5289} {Pfam: LIM-domain binding protein [PF01803.18, score=150.2]; LIM interaction domain (LID) [PF17916.3, score=61.7]} {Human: ENSG00000169744, LDB2, LIM domain binding 2, [RH, Score=400, Expect=2e-132]; ENSG00000198728, LDB1, LIM domain binding 1, [RH, Score=380, Expect=6e-125]} {Mouse: ENSMUSG00000039706, Ldb2, LIM domain binding 2, [RH, Score=397, Expect=9e-132]; ENSMUSG00000025223, Ldb1, LIM domain binding 1, [RH, Score=380, Expect=5e-125]} {Dmel: FBgn0013764, Chi, Chip, [RH, Score=352, Expect=2e-111]} {Celegans: WBGene00002261, ldb-1, F58A3.1a; LIM Domain Binding protein, [RH, Score=154, Expect=2e-39]} {Smed: dd_Smed_v6_3678_0_1, dd_Smed_v6_3678_0_1, [RH, Score=365, Expect=2e-116]} {RNA1509_38395} {RNA1310_9608.1} {RNA815_20796}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA