M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_42361

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42361 60 1.25 Mlig455_046645

Neo: -

Age: -

 Mlig455_046645 {REF} {Length: 4174} {TRANSSPLICED} {RNA1509_14274} {RNA1310_2883.1, RNA1509_14274} {RNA1509_14274, RNA815_1000}

Cumulative graph for MligTC455_42361

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.811 1.588 0.99983 1.00000
RegionR2 2.903 1.588 0.04353 0.24492
RegionR3 2.75 1.588 0.01241 0.17605
RegionR4 0.421 1.588 0.61603 0.92660
RegionR5 0.791 1.588 0.45994 0.82209
RegionR6 2.71 1.588 0.01612 0.22375
RegionR7 1.805 1.588 0.19678 0.80316
RegionR8 -4.569 1.588 0.99966 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.583 1.588 0.99985 1.00000
RegenerationR2 -0.963 1.588 0.29838 0.74035
RegenerationR3 -0.937 1.588 0.33760 0.76217
RegenerationR4 0.101 1.588 0.93341 1.00000
RegenerationR5 -0.746 1.588 0.42407 0.81405
RegenerationR6 -0.582 1.588 0.57346 0.85383
RegenerationBL -2.577 1.588 0.99958 1.00000
RegenerationTP 1.904 1.588 0.44381 0.86324


Genes with expression patterns similar to MligTC455_42361

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42361 60 1.25 Mlig455_046645

Neo: -

Age: -

 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_046645 {REF} {Length: 4174} {TRANSSPLICED} {RNA1509_14274} {RNA1310_2883.1, RNA1509_14274} {RNA1509_14274, RNA815_1000}
2. MligTC455_15731 36 0.76 Mlig455_045491

Neo: -

Age: -

 1.675 0.720 - - - 0.955 - Mlig455_045491 {REF} {Length: 560} {NoTransDecoderORF} {RNA1509_38091} {RNA1310_15069.1} {RNA815_11643}
3. MligTC455_12309 17 0.36 Mlig455_043008

Neo: Irradiation

Age: Up-Down-Down

 ABCA10 0.99 - - - - 0.990 - Mlig455_043008 {REF} {Length: 5813} {Pfam: ABC transporter [PF00005.29, score=175.6]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=76.3]; ABC-2 family transporter protein [PF12698.9, score=38.5]; AAA domain [PF13476.8, score=29.2]; AAA ATPase domain [PF13175.8, score=28.6]; RsgA GTPase [PF03193.18, score=27.5]; NB-ARC domain [PF00931.24, score=24.9]; AAA domain [PF13401.8, score=24.0]; P-loop containing region of AAA domain [PF13555.8, score=23.9]; AAA domain [PF13604.8, score=23.9]; AAA ATPase domain [PF13191.8, score=22.9]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.9]} {Human: ENSG00000154263, ABCA10, ATP binding cassette subfamily A member 10, [Score=236, Expect=3e-62]; ENSG00000154258, ABCA9, ATP binding cassette subfamily A member 9, [Score=226, Expect=5e-59]; ENSG00000141338, ABCA8, ATP binding cassette subfamily A member 8, [Score=225, Expect=1e-58]} {Mouse: ENSMUSG00000041828, Abca8a, ATP-binding cassette, sub-family A (ABC1), member 8a, [Score=223, Expect=6e-58]; ENSMUSG00000020620, Abca8b, ATP-binding cassette, sub-family A (ABC1), member 8b, [Score=215, Expect=1e-55]} {Dmel: FBgn0031170, CG1718, [Score=185, Expect=1e-46]} {Celegans: WBGene00000421, ced-7, ABC transporter ced-7, [Score=295, Expect=9e-81]} {Smed: dd_Smed_v6_10304_0_1, dd_Smed_v6_10304_0_1, [Score=176, Expect=4e-44]} {RNA1509_6974} {RNA1310_809} {RNA815_234.1}
4. MligTC455_48407 103 2.14 Mlig455_033382

Neo: -

Age: -

Region-specific R4: 5.171

 0.983 - - - - 0.983 - Mlig455_033382 {REF} {Length: 435} {RNA1509_54740, RNA1509_56133} {RNA1310_8398, RNA1509_54740} {RNA1509_54740, RNA815_65067}
5. MligTC455_14361 30 0.62 Mlig455_018338

Neo: Irradiation

Age: Up-Down-Up

 0.982 - - - - 0.982 - Mlig455_018338 {REF} {Length: 2514} {Pfam: Galactosyltransferase [PF01762.23, score=19.2]} {RNA1509_39518} {RNA1310_47457} {RNA815_35070}
6. MligTC455_13923 18 0.38 Mlig455_027566, Mlig455_039121

Neo: -

Age: -

 0.98 - - - - 0.980 -

Mlig455_027566 {REF} {Length: 1444} {NoTransDecoderORF} {RNA1509_58025} {RNA1310_89044} {RNA815_59752}

Mlig455_039121 {REF} {Length: 395} {NoTransDecoderORF} {RNA1509_58025} {RNA1310_3355.1} {RNA815_59752}
7. MligTC455_37927 29 0.59 Mlig455_005071, Mlig455_014052, Mlig455_025140, Mlig455_039469, Mlig455_070126

Neo: -

Age: -

 0.98 - - - - 0.980 -

Mlig455_005071 {REF} {Length: 965} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=28.7]; Myb/SANT-like DNA-binding domain [PF13837.8, score=20.2]} {RNA1310_46038}

Mlig455_014052 {REF} {Length: 1489} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=32.8]; Myb/SANT-like DNA-binding domain [PF13837.8, score=22.5]} {RNA1310_68333}

Mlig455_025140 {REF} {Length: 761} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=35.9]; Myb/SANT-like DNA-binding domain [PF13837.8, score=23.0]} {RNA1310_46038}

Mlig455_039469 {REF} {Length: 1212} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=25.1]} {RNA1310_46038} {RNA815_30681}

Mlig455_070126 {REF} {Length: 1489} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=32.8]; Myb/SANT-like DNA-binding domain [PF13837.8, score=22.5]} {RNA1310_68333}
8. MligTC455_54174 62 1.3 Mlig455_033112

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.497

 0.978 - - - - 0.978 - Mlig455_033112 {REF} {Length: 2671} {RNA1509_21301} {RNA1310_14403} {RNA815_5347}
9. MligTC455_12526 15 0.31 Mlig455_002108

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_002108 {REF} {Length: 1517} {NoTransDecoderORF} {RNA1310_38807} {RNA815_47102}
10. MligTC455_14552 16 0.33 Mlig455_065727

Neo: -

Age: -

Region-enriched R2: 7.671/0.03351

 0.975 - - - - 0.975 - Mlig455_065727 {REF} {Length: 518} {NoTransDecoderORF} {RNA1509_32371} {RNA1310_83550} {RNA815_28290}
11. MligTC455_06551 94 1.96 Mlig455_064172

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 6.271

Region-enriched R4: 3.608/0.00442

 0.974 - - - - 0.974 - Mlig455_064172 {REF} {Length: 2845} {RNA1509_40295, RNA1509_52049} {RNA1310_19782, RNA1509_40295, RNA1509_52049} {RNA1509_40295, RNA1509_52049, RNA815_24302}
12. MligTC455_46176 40 0.83 Mlig455_063902

Neo: Int S/G2/M

Age: -

 0.973 - - - - 0.973 - Mlig455_063902 {REF} {Length: 2105} {RNA1509_8906} {RNA1310_18621.1} {RNA815_15980.1}
13. MligTC455_21369 20 0.41 Mlig455_004493

Neo: Germline

Age: -

 0.972 - - - - 0.972 - Mlig455_004493 {REF} {Length: 649} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=184.3]} {RNA1310_256.1} {RNA815_3111}
14. MligTC455_43975 16 0.33 Mlig455_044217

Neo: -

Age: -

 IMMP1L 0.972 - - - - 0.972 - Mlig455_044217 {REF} {Length: 269} {TRANSSPLICED} {Pfam: Signal peptidase, peptidase S26 [PF10502.11, score=44.7]; Peptidase S24-like [PF00717.25, score=25.2]} {Human: ENSG00000148950, IMMP1L, inner mitochondrial membrane peptidase subunit 1, [RH, Score=48.5, Expect=2e-07]} {Mouse: ENSMUSG00000042670, Immp1l, IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae), [RH, Score=48.1, Expect=2e-07]} {Dmel: FBgn0030669, CG9240, [RH, Score=48.5, Expect=1e-07]} {Celegans: WBGene00007021, immp-1, Inner Mitochondrial Membrane Protease, [RH, Score=54.7, Expect=2e-10]} {RNA1509_19110} {RNA1310_50328} {RNA815_18341.1}
15. MligTC455_09324 52 1.09 Mlig455_068091

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_068091 {REF} {Length: 1097} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=24.0]} {RNA1310_17409} {RNA815_27071}
16. MligTC455_26306 88 1.83 Mlig455_042029

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_042029 {REF} {Length: 1756} {Pfam: Soluble NSF attachment protein, SNAP [PF14938.8, score=172.1]; Tetratricopeptide repeat [PF13424.8, score=21.0]} {Celegans: WBGene00017016, snap-1, SNAP (Soluble NSF Attachment Protein) homolog, [Score=134, Expect=2e-37]} {Smed: dd_Smed_v6_2480_0_1, dd_Smed_v6_2480_0_1, [Score=111, Expect=6e-29]} {RNA1509_30138} {RNA1310_37045} {RNA815_18403}
17. MligTC455_51887 123 2.56 Mlig455_009015

Neo: Int S/G2/M

Age: -

Region-enriched R4: 4.290/0.00000

 0.966 - - - - 0.966 - Mlig455_009015 {REF} {Length: 2778} {Pfam: Nucleoside 2-deoxyribosyltransferase [PF05014.17, score=23.6]} {Mouse: ENSMUSG00000040658, Dnph1, 2'-deoxynucleoside 5'-phosphate N-hydrolase 1, [Score=48.1, Expect=5e-07]} {RNA1509_34641} {RNA1310_41930} {RNA815_14966}
18. MligTC455_15516 107 2.23 Mlig455_052960

Neo: Germline

Age: Down-Down-Up

Region-specific R4: 5.444

Region-enriched R4: 3.219/0.00440

 0.965 - - - - 0.965 - Mlig455_052960 {REF} {Length: 931} {RNA1509_6281} {RNA1310_42233} {RNA815_26722}
19. MligTC455_36961 50 1.05 Mlig455_031335

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_031335 {REF} {Length: 519} {RNA1509_53976} {RNA1310_63130} {RNA815_33431}
20. MligTC455_54172 139 2.89 Mlig455_010947

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 6.319

Region-enriched R4: 2.570/0.04231

 0.962 - - - - 0.962 - Mlig455_010947 {REF} {Length: 2780} {RNA1509_21301, RNA1509_27892, RNA1509_55865} {RNA1310_14403, RNA1509_21301, RNA1509_27892, RNA1509_55865} {RNA1509_21301, RNA1509_27892, RNA1509_55865, RNA815_5347}
21. MligTC455_06776 68 1.41 Mlig455_000689, Mlig455_000745

Neo: -

Age: -

 0.961 - - - 0.961 - -

Mlig455_000689 {REF} {Length: 1877} {Pfam: Mitochondrial Myo2 receptor-related protein [PF08505.12, score=19.0]} {RNA1509_21195} {RNA1310_20161.1} {RNA815_26275}

Mlig455_000745 {REF} {Length: 1899} {Pfam: Family of unknown function (DUF5308) [PF17233.4, score=20.9]} {RNA1509_21195} {RNA1310_20161.1} {RNA815_26275}
22. MligTC455_18933 13 0.26 Mlig455_012313

Neo: -

Age: Up-Down-Up

 0.961 - - - - 0.961 - Mlig455_012313 {REF} {Length: 1028} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=23.1]; Integrase core domain [PF00665.28, score=22.4]; Integrase core domain [PF13683.8, score=20.5]} {RNA1509_34922} {RNA1310_4440} {RNA815_2484.1}
23. MligTC455_57616 11 0.23 Mlig455_029418

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_029418 {REF} {Length: 242} {NoTransDecoderORF}
24. MligTC455_30180 41 0.85 Mlig455_009174

Neo: -

Age: Up-Down-Up

 KIDINS220 0.957 - - - - 0.957 - Mlig455_009174 {REF} {Length: 4514} {Pfam: Mab-21 protein [PF03281.16, score=38.4]; Ankyrin repeats (3 copies) [PF12796.9, score=33.2]; Ankyrin repeat [PF13606.8, score=23.6]; Ankyrin repeats (many copies) [PF13857.8, score=23.2]; Integrase core domain [PF00665.28, score=22.4]} {Human: ENSG00000134313, KIDINS220, kinase D interacting substrate 220, [Score=52.0, Expect=8e-06]; ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=51.2, Expect=1e-05]; ENSG00000165887, ANKRD2, ankyrin repeat domain 2, [Score=50.4, Expect=1e-05]} {Mouse: ENSMUSG00000078487, Ankrd65, ankyrin repeat domain 65, [Score=59.3, Expect=1e-08]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=52.4, Expect=3e-06]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=63.5, Expect=6e-10]} {RNA1509_48615} {RNA1310_1764.1} {RNA815_3668.1}
25. MligTC455_13702 256 5.34 Mlig455_044274

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 6.869

Region-enriched R4: 4.010/0.00001

 0.954 - - - - 0.954 - Mlig455_044274 {REF} {Length: 1868} {RNA1509_27134, RNA1509_39588} {RNA1310_14874, RNA1509_27134, RNA1509_39588} {RNA1509_27134, RNA1509_39588, RNA815_54704}
26. MligTC455_11178 117 2.44 Mlig455_056466

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 6.399

Region-enriched R4: 4.829/0.00000

 SLC16A9 0.952 - - - - 0.952 - Mlig455_056466 {REF} {Length: 3961} {Pfam: Major Facilitator Superfamily [PF07690.18, score=67.9]} {Human: ENSG00000165449, SLC16A9, solute carrier family 16 member 9, [Score=132, Expect=5e-33]; ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [Score=132, Expect=5e-33]} {Mouse: ENSMUSG00000037762, Slc16a9, solute carrier family 16 (monocarboxylic acid transporters), member 9, [Score=127, Expect=2e-31]; ENSMUSG00000041920, Slc16a6, solute carrier family 16 (monocarboxylic acid transporters), member 6, [Score=124, Expect=2e-30]; ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [Score=121, Expect=3e-29]} {Dmel: FBgn0023549, Mct1, Monocarboxylate transporter 1, [Score=119, Expect=3e-28]} {Celegans: WBGene00015273, mct-2, MonoCarboxylate Transporter family, [Score=124, Expect=1e-30]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=137, Expect=5e-35]} {RNA1509_42957} {RNA1310_19535.1, RNA1509_42957} {RNA1509_42957, RNA815_27581}
27. MligTC455_03917 31 0.65 Mlig455_018938

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_018938 {REF} {Length: 356} {NoTransDecoderORF} {RNA1509_12016} {RNA1310_130231} {RNA815_7574.1}
28. MligTC455_32189 380 7.92 Mlig455_017397, Mlig455_017475, Mlig455_030921

Neo: Int S/G2/M

Age: Up-Down-Down

 0.951 - - - - 0.951 -

Mlig455_017397 {REF} {Length: 2450} {RNA1509_58262} {RNA1310_13688.1} {RNA815_25511}

Mlig455_017475 {REF} {Length: 2669} {RNA1509_46350, RNA1509_58262} {RNA1310_13688.1, RNA1509_46350} {RNA1509_46350, RNA815_25511}

Mlig455_030921 {REF} {Length: 2320} {RNA1509_58262} {RNA1310_13688.1, RNA1509_58262} {RNA1509_58262, RNA815_25511}
29. MligTC455_06815 70 1.46 Mlig455_026013, Mlig455_070440

Neo: -

Age: -

Region-enriched R8: 5.840/0.01787

 0.95 - - - - 0.950 -

Mlig455_026013 {REF} {Length: 978} {NoTransDecoderORF} {RNA1310_100888} {RNA815_20773}

Mlig455_070440 {REF} {Length: 978} {NoTransDecoderORF} {RNA1310_100888} {RNA815_20773}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA