TomoSeq data search

Data search

Results for MligTC455_42964

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_42964

179

3.73

Mlig455_023682

Neo: -

Age: -

TRPM1

Mlig455_023682 {REF} {Length: 4629} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=106.2]; Ankyrin repeats (many copies) [PF13637.8, score=82.9]; Ankyrin repeat [PF00023.32, score=71.9]; Ankyrin repeats (many copies) [PF13857.8, score=67.7]; Ankyrin repeat [PF13606.8, score=58.9]; Ion transport protein [PF00520.33, score=41.0]} {Human: ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=138, Expect=4e-32]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=137, Expect=4e-32]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=145, Expect=2e-34]} {Dmel: FBgn0260005, wtrw, water witch, [Score=73.9, Expect=6e-13]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=79.3, Expect=1e-14]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=179, Expect=1e-45]} {RNA1509_17450} {RNA1310_2662, RNA1509_17450} {RNA1509_17450, RNA815_1459}

Cumulative graph for MligTC455_42964

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.437	2.583	0.35660	0.99966
RegionR2	0.269	2.583	0.77463	1.00000
RegionR3	2.344	2.583	0.00228	0.05476
RegionR4	0.746	2.583	0.44218	0.77064
RegionR5	1.048	2.583	0.22877	0.53468
RegionR6	1.762	2.583	0.04381	0.39185
RegionR7	2.432	2.583	0.01133	0.18598
RegionR8	-4.164	2.583	0.32197	0.95564

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.358	2.583	0.90682	1.00000
RegenerationR2	1.064	2.583	0.19871	0.64433
RegenerationR3	0.311	2.583	0.62375	0.91770
RegenerationR4	0.715	2.583	0.29501	0.73805
RegenerationR5	1.013	2.583	0.09766	0.47828
RegenerationR6	0.942	2.583	0.16448	0.49432
RegenerationBL	1.508	2.583	0.30317	0.66683
RegenerationTP	3.096	2.583	0.04427	0.34925

Genes with expression patterns similar to MligTC455_42964

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_42964	179	3.73	Mlig455_023682	Neo: - Age: -	TRPM1	5	1.000	1.000	-	1.000	1.000	1.000	Mlig455_023682 {REF} {Length: 4629} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=106.2]; Ankyrin repeats (many copies) [PF13637.8, score=82.9]; Ankyrin repeat [PF00023.32, score=71.9]; Ankyrin repeats (many copies) [PF13857.8, score=67.7]; Ankyrin repeat [PF13606.8, score=58.9]; Ion transport protein [PF00520.33, score=41.0]} {Human: ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=138, Expect=4e-32]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=137, Expect=4e-32]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=145, Expect=2e-34]} {Dmel: FBgn0260005, wtrw, water witch, [Score=73.9, Expect=6e-13]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=79.3, Expect=1e-14]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=179, Expect=1e-45]} {RNA1509_17450} {RNA1310_2662, RNA1509_17450} {RNA1509_17450, RNA815_1459}
2.	MligTC455_53392	19385	403.85	Mlig455_011756	Neo: - Age: Up-Down-Down	AC099489.1	0.963	-	-	-	0.963	-	-	Mlig455_011756 {REF} {Length: 12638} {Pfam: Lipoprotein amino terminal region [PF01347.24, score=206.4]; Domain of unknown function (DUF1943) [PF09172.13, score=113.7]; von Willebrand factor type D domain [PF00094.27, score=46.2]; C8 domain [PF08742.13, score=20.4]} {Human: ENSG00000188897, AC099489.1, vitellogenin, [Score=172, Expect=1e-41]} {Mouse: ENSMUSG00000020609, Apob, apolipoprotein B, [Score=95.1, Expect=2e-18]} {Dmel: FBgn0032136, Apoltp, Apolipoprotein lipid transfer particle, [Score=156, Expect=3e-37]} {Smed: dd_Smed_v6_636_0_1, dd_Smed_v6_636_0_1, [Score=176, Expect=2e-43]} {RNA1509_1881, RNA1509_22, RNA1509_49208} {RNA1310_66, RNA1509_1881, RNA1509_49208} {RNA1509_1881, RNA1509_49208, RNA815_31.1}
3.	MligTC455_53393	19628	408.92	Mlig455_019898	Neo: - Age: Up-Down-Down Regeneration-depleted R3: -3.803 Regeneration-depleted BL: -3.322	AC099489.1	0.962	-	-	-	0.962	-	-	Mlig455_019898 {REF} {Length: 11591} {Pfam: Lipoprotein amino terminal region [PF01347.24, score=204.2]; Domain of unknown function (DUF1943) [PF09172.13, score=109.0]; von Willebrand factor type D domain [PF00094.27, score=28.1]} {Human: ENSG00000188897, AC099489.1, vitellogenin, [Score=169, Expect=7e-41]} {Mouse: ENSMUSG00000020609, Apob, apolipoprotein B, [Score=94.0, Expect=4e-18]} {Dmel: FBgn0032136, Apoltp, Apolipoprotein lipid transfer particle, [Score=152, Expect=7e-36]} {Smed: dd_Smed_v6_636_0_1, dd_Smed_v6_636_0_1, [Score=179, Expect=2e-44]} {RNA1509_69} {RNA1310_66} {RNA815_31.1}
4.	MligTC455_22992	243	5.06	Mlig455_008850	Neo: - Age: Down-Up-Up		0.96	-	-	-	-	-	0.960	Mlig455_008850 {REF} {Length: 4108} {TRANSSPLICED} {RNA1509_13451, RNA1509_38548} {RNA1310_12990, RNA1509_13451, RNA1509_38548} {RNA1509_13451, RNA1509_38548, RNA815_15606}
5.	MligTC455_13690	109	2.27	Mlig455_002371	Neo: - Age: -	DNAJC11	0.954	-	-	-	0.954	-	-	Mlig455_002371 {REF} {Length: 3345} {Pfam: Domain of unknown function (DUF3395) [PF11875.10, score=117.3]; DnaJ domain [PF00226.33, score=56.0]} {Human: ENSG00000007923, DNAJC11, DnaJ heat shock protein family (Hsp40) member C11, [RH, Score=189, Expect=2e-52]} {Mouse: ENSMUSG00000039768, Dnajc11, DnaJ heat shock protein family (Hsp40) member C11, [RH, Score=192, Expect=1e-53]} {Dmel: FBgn0033918, CG8531, [RH, Score=190, Expect=3e-53]} {Celegans: WBGene00001027, dnj-9, DNaJ domain (Prokaryotic heat shock protein), [RH, Score=149, Expect=2e-38]} {Smed: dd_Smed_v6_2801_0_1, dd_Smed_v6_2801_0_1, [RH, Score=221, Expect=4e-64]} {RNA1509_20349} {RNA1310_13889} {RNA815_4824.1}

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