TomoSeq data search

Data search

Results for MligTC455_43042

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_43042

497

10.35

Mlig455_036805, Mlig455_052941

Neo: -

Age: Down-Down-Up

Region-enriched R3: 2.713/0.03378

Mlig455_036805 {REF} {Length: 3140} {RNA1509_10620} {RNA1310_36955, RNA1509_10620} {RNA1509_10620, RNA815_22686}

Mlig455_052941 {REF} {Length: 2371} {RNA1509_10620} {RNA1310_36955} {RNA815_22686}

Cumulative graph for MligTC455_43042

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-5.529	3.853	0.99989	1.00000
RegionR2	1.685	3.853	0.13479	0.45582
RegionR3	2.713	3.853	0.00120	0.03378
RegionR4	1.713	3.853	0.08922	0.28478
RegionR5	1.697	3.853	0.05725	0.20617
RegionR6	2.381	3.853	0.00846	0.15189
RegionR7	-5.65	3.853	0.99983	1.00000
RegionR8	0.99	3.853	0.42391	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.132	3.853	1.00000	1.00000
RegenerationR2	0.957	3.853	0.13321	0.55990
RegenerationR3	0.356	3.853	0.58217	0.89985
RegenerationR4	1.059	3.853	0.13486	0.55399
RegenerationR5	1.003	3.853	0.11186	0.50468
RegenerationR6	0.94	3.853	0.14500	0.46660
RegenerationBL	3.141	3.853	0.00230	0.03967
RegenerationTP	-2.98	3.853	0.99959	1.00000

Genes with expression patterns similar to MligTC455_43042

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_43042	497	10.35	Mlig455_036805, Mlig455_052941	Neo: - Age: Down-Down-Up Region-enriched R3: 2.713/0.03378		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_036805 {REF} {Length: 3140} {RNA1509_10620} {RNA1310_36955, RNA1509_10620} {RNA1509_10620, RNA815_22686} Mlig455_052941 {REF} {Length: 2371} {RNA1509_10620} {RNA1310_36955} {RNA815_22686}
2.	MligTC455_38075	513	10.69	Mlig455_037147	Neo: - Age: Down-Down-Up		1.719	-	-	-	0.982	-	0.737	Mlig455_037147 {REF} {Length: 3140} {Pfam: Zona pellucida-like domain [PF00100.25, score=46.9]; Scavenger receptor cysteine-rich domain [PF00530.20, score=43.8]} {RNA1509_39101} {RNA1310_14098} {RNA815_2224.1}
3.	MligTC455_36227	468	9.74	Mlig455_028911	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.771 Region-enriched R3: 2.293/0.00181		1.696	-	-	-	0.957	-	0.739	Mlig455_028911 {REF} {Length: 8690} {RNA1509_29347, RNA1509_36244, RNA1509_5854} {RNA1310_268.1, RNA1509_29347, RNA1509_36244} {RNA1509_29347, RNA1509_36244, RNA815_437}
4.	MligTC455_12322	243	5.06	Mlig455_029746, Mlig455_029844	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.386	CUBN	1.691	0.739	-	-	0.952	-	-	Mlig455_029746 {REF} {Length: 12113} {Pfam: CUB domain [PF00431.22, score=221.4]; EGF-like domain [PF00008.29, score=34.6]; Calcium-binding EGF domain [PF07645.17, score=28.4]; Complement Clr-like EGF-like [PF12662.9, score=22.6]} {Human: ENSG00000107611, CUBN, cubilin, [Score=181, Expect=1e-44]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=169, Expect=3e-41]} {Dmel: FBgn0052702, Cubn, Cubilin, [RH, Score=207, Expect=1e-52]} {Celegans: WBGene00013855, ZC116.3, Probable cubilin, [RH, Score=189, Expect=2e-47]} {Smed: dd_Smed_v6_4575_0_1, dd_Smed_v6_4575_0_1, [RH, Score=256, Expect=8e-68]} {RNA1509_4700} {RNA1310_80.1, RNA1509_4700} {RNA1509_4700, RNA815_184} Mlig455_029844 {REF} {Length: 11980} {Pfam: CUB domain [PF00431.22, score=287.4]; EGF-like domain [PF00008.29, score=32.1]; Calcium-binding EGF domain [PF07645.17, score=28.0]; Complement Clr-like EGF-like [PF12662.9, score=22.2]} {Human: ENSG00000107611, CUBN, cubilin, [Score=182, Expect=1e-44]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=170, Expect=4e-41]} {Dmel: FBgn0052702, Cubn, Cubilin, [RH, Score=206, Expect=3e-52]} {Celegans: WBGene00013855, ZC116.3, Probable cubilin, [RH, Score=190, Expect=2e-47]} {Smed: dd_Smed_v6_4575_0_1, dd_Smed_v6_4575_0_1, [Score=229, Expect=1e-59]} {RNA1509_4700} {RNA1310_80.1} {RNA815_184}
5.	MligTC455_16709	1302	27.12	Mlig455_029518	Neo: - Age: - Region-enriched R3: 1.855/0.00908	SLC13A3	0.976	-	-	-	0.976	-	-	Mlig455_029518 {REF} {Length: 2726} {Pfam: Sodium:sulfate symporter transmembrane region [PF00939.21, score=302.1]; Citrate transporter [PF03600.18, score=114.3]} {Human: ENSG00000158296, SLC13A3, solute carrier family 13 member 3, [Score=406, Expect=7e-134]} {Mouse: ENSMUSG00000018459, Slc13a3, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3, [Score=384, Expect=3e-125]; ENSMUSG00000029700, Slc13a1, solute carrier family 13 (sodium/sulfate symporters), member 1, [Score=367, Expect=8e-119]; ENSMUSG00000020805, Slc13a5, solute carrier family 13 (sodium-dependent citrate transporter), member 5, [Score=366, Expect=1e-118]; ENSMUSG00000001095, Slc13a2, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, [Score=366, Expect=1e-118]; ENSMUSG00000029843, Slc13a4, solute carrier family 13 (sodium/sulfate symporters), member 4, [Score=365, Expect=5e-118]} {Dmel: FBgn0036816, Indy, I'm not dead yet, [Score=281, Expect=1e-86]} {Celegans: WBGene00003517, nac-1, Sodium-dependent low-affinity dicarboxylate transporter 1, [Score=317, Expect=7e-100]} {Smed: dd_Smed_v6_12964_0_8, dd_Smed_v6_12964_0_8, [Score=360, Expect=6e-117]} {RNA1509_9551} {RNA1310_8761.2} {RNA815_3645}
6.	MligTC455_39678	1206	25.13	Mlig455_044223	Neo: - Age: -		0.974	-	-	-	-	0.974	-	Mlig455_044223 {REF} {Length: 2705} {TRANSSPLICED} {RNA1509_4626} {RNA1310_6681, RNA1509_4626} {RNA1509_4626, RNA815_2257}
7.	MligTC455_48740	47	0.98	Mlig455_063381	Neo: - Age: -	ENTPD6	0.956	0.956	-	-	-	-	-	Mlig455_063381 {REF} {Length: 3635} {Pfam: GDA1/CD39 (nucleoside phosphatase) family [PF01150.19, score=150.5]} {Human: ENSG00000197586, ENTPD6, ectonucleoside triphosphate diphosphohydrolase 6 (putative), [Score=150, Expect=2e-38]} {Mouse: ENSMUSG00000033068, Entpd6, ectonucleoside triphosphate diphosphohydrolase 6, [Score=145, Expect=3e-37]} {Dmel: FBgn0024947, NTPase, [Score=121, Expect=4e-29]} {Celegans: WBGene00010697, uda-1, Nucleoside-diphosphatase uda-1, [Score=106, Expect=3e-24]} {Smed: dd_Smed_v6_8855_0_2, dd_Smed_v6_8855_0_2, [Score=140, Expect=7e-36]} {RNA1509_57098} {RNA1310_10322} {RNA815_52534}
8.	MligTC455_35361	1420	29.59	Mlig455_008509	Neo: - Age: -	HDHD5	0.954	-	-	-	0.954	-	-	Mlig455_008509 {REF} {Length: 2717} {Pfam: Haloacid dehalogenase-like hydrolase [PF13344.8, score=51.4]; HAD-hyrolase-like [PF13242.8, score=33.8]} {Human: ENSG00000069998, HDHD5, haloacid dehalogenase like hydrolase domain containing 5, [Score=287, Expect=1e-92]} {Mouse: ENSMUSG00000058979, Hdhd5, haloacid dehalogenase like hydrolase domain containing 5, [RH, Score=274, Expect=8e-88]} {Celegans: WBGene00019255, H32C10.1, [RH, Score=210, Expect=1e-63]} {Smed: dd_Smed_v6_1170_0_1, dd_Smed_v6_1170_0_1, [RH, Score=425, Expect=3e-147]} {RNA1509_48618, RNA1509_9914} {RNA1310_18496, RNA1509_48618, RNA1509_9914} {RNA1509_48618, RNA1509_9914, RNA815_7610}
9.	MligTC455_29744	129	2.68	Mlig455_030037	Neo: - Age: Up-Up-Up, logFC(26M/2M)=1.434	URGCP	0.951	-	-	-	0.951	-	-	Mlig455_030037 {REF} {Length: 8092} {Pfam: Root hair defective 3 GTP-binding protein (RHD3) [PF05879.14, score=31.2]; Dynamin family [PF00350.25, score=19.4]; 50S ribosome-binding GTPase [PF01926.25, score=18.9]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [Score=132, Expect=2e-30]} {Mouse: ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [Score=510, Expect=3e-148]; ENSMUSG00000078606, Gm4070, predicted gene 4070, [Score=510, Expect=2e-148]} {RNA1509_12278, RNA1509_1879} {RNA1310_768, RNA1509_12278, RNA1509_1879} {RNA1509_12278, RNA1509_1879, RNA815_2116.1}

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