M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43043

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43043 37 0.78 Mlig455_053011

Neo: -

Age: -

 Mlig455_053011 {REF} {Length: 3227} {RNA1509_10620} {RNA1310_36955} {RNA815_22686}

Cumulative graph for MligTC455_43043

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.37 1.251 0.99995 1.00000
RegionR2 -2.822 1.251 0.99981 1.00000
RegionR3 -0.766 1.251 0.99994 1.00000
RegionR4 3.413 1.251 0.99990 1.00000
RegionR5 0.324 1.251 0.99997 1.00000
RegionR6 -0.844 1.251 0.99995 1.00000
RegionR7 -0.874 1.251 0.99998 1.00000
RegionR8 -0.8 1.251 0.99999 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.301 1.251 0.99997 1.00000
RegenerationR2 4.252 1.251 0.00234 0.07285
RegenerationR3 3.682 1.251 0.07101 0.44629
RegenerationR4 2.348 1.251 0.14474 0.57021
RegenerationR5 3.26 1.251 0.04271 0.33861
RegenerationR6 4.25 1.251 0.03474 0.23353
RegenerationBL -0.004 1.251 0.99999 1.00000
RegenerationTP -1.451 1.251 0.99992 1.00000


Genes with expression patterns similar to MligTC455_43043

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43043 37 0.78 Mlig455_053011

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_053011 {REF} {Length: 3227} {RNA1509_10620} {RNA1310_36955} {RNA815_22686}
2. MligTC455_07569 28 0.59 Mlig455_066997

Neo: -

Age: -

 1.661 - - - - 0.953 0.708 Mlig455_066997 {REF} {Length: 819} {RNA1509_50562} {RNA1310_122277}
3. MligTC455_45581 49 1.03 Mlig455_045128, Mlig455_045162

Neo: -

Age: Down-Down-Up

Region-enriched R7: 4.346/0.00514

 0.97 - - - 0.970 - -

Mlig455_045128 {REF} {Length: 2950} {RNA1509_29, RNA1509_3187} {RNA1310_4199.2, RNA1509_3187} {RNA1509_3187, RNA815_8541.1}

Mlig455_045162 {REF} {Length: 620} {NoTransDecoderORF} {RNA1509_10639} {RNA1310_4199.2} {RNA815_24585}
4. MligTC455_22147 49 1.03 Mlig455_016021

Neo: -

Age: -

 XDH 0.969 - - - - 0.969 - Mlig455_016021 {REF} {Length: 1178} {Pfam: Molybdopterin-binding domain of aldehyde dehydrogenase [PF02738.20, score=363.8]; EF-hand domain pair [PF13499.8, score=113.4]; EF hand [PF00036.34, score=108.8]; [2Fe-2S] binding domain [PF01799.22, score=95.7]; EF-hand domain [PF13405.8, score=88.2]; EF-hand domain pair [PF13833.8, score=75.8]; EF hand [PF13202.8, score=73.1]; EF-hand domain [PF14658.8, score=47.8]; FAD binding domain in molybdopterin dehydrogenase [PF00941.23, score=23.1]; CO dehydrogenase flavoprotein C-terminal domain [PF03450.19, score=21.0]} {Human: ENSG00000158125, XDH, xanthine dehydrogenase, [Score=260, Expect=2e-70]; ENSG00000138356, AOX1, aldehyde oxidase 1, [Score=249, Expect=7e-67]} {Mouse: ENSMUSG00000024066, Xdh, xanthine dehydrogenase, [Score=273, Expect=9e-75]} {Dmel: FBgn0038349, AOX3, Aldehyde oxidase 3, [Score=284, Expect=1e-78]} {Celegans: WBGene00010083, xhd-1, [Score=268, Expect=3e-73]} {Smed: dd_Smed_v6_414_0_1, dd_Smed_v6_414_0_1, [Score=155, Expect=1e-43]} {RNA1310_43862} {RNA815_18862}
5. MligTC455_20454 27 0.55 Mlig455_043192

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_043192 {REF} {Length: 897} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_38627}
6. MligTC455_30554 33 0.68 Mlig455_016310, Mlig455_024571, Mlig455_039538, Mlig455_044758, Mlig455_045262, Mlig455_071026

Neo: -

Age: -

 0.963 - - - - 0.963 -

Mlig455_016310 {REF} {Length: 4501} {Pfam: PIF1-like helicase [PF05970.16, score=238.2]; Helitron helicase-like domain at N-terminus [PF14214.8, score=205.3]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=73.6, Expect=1e-12]} {Celegans: WBGene00019136, F59H6.5, [Score=617, Expect=0.0]} {Smed: dd_Smed_v6_22430_0_1, dd_Smed_v6_22430_0_1, [RH, Score=123, Expect=6e-33]} {RNA1509_37249} {RNA1310_981, RNA1509_37249} {RNA1509_37249, RNA815_15863}

Mlig455_024571 {REF} {Length: 3781} {TRANSSPLICED} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=211.0]} {Celegans: WBGene00019136, F59H6.5, [Score=352, Expect=2e-105]} {Smed: dd_Smed_v6_22430_0_1, dd_Smed_v6_22430_0_1, [Score=110, Expect=8e-29]} {RNA1509_37249} {RNA1310_981} {RNA815_15863}

Mlig455_039538 {REF} {Length: 1998} {TRANSSPLICED} {Smed: dd_Smed_v6_91935_0_1, dd_Smed_v6_91935_0_1, [Score=82.0, Expect=1e-20]} {RNA1509_37249} {RNA1310_981} {RNA815_15863}

Mlig455_044758 {REF} {Length: 4141} {TRANSSPLICED} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=210.2]; PIF1-like helicase [PF05970.16, score=115.8]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=49.7, Expect=1e-05]} {Celegans: WBGene00019136, F59H6.5, [Score=296, Expect=1e-83]} {Smed: dd_Smed_v6_91935_0_1, dd_Smed_v6_91935_0_1, [RH, Score=106, Expect=1e-26]} {RNA1509_37249} {RNA1310_981} {RNA815_15863}

Mlig455_045262 {REF} {Length: 3684} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=210.5]} {Celegans: WBGene00019136, F59H6.5, [Score=467, Expect=9e-146]} {Smed: dd_Smed_v6_22430_0_1, dd_Smed_v6_22430_0_1, [RH, Score=123, Expect=3e-33]} {RNA1509_37249} {RNA1310_981} {RNA815_15863}

Mlig455_071026 {REF} {Length: 4141} {TRANSSPLICED} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=210.2]; PIF1-like helicase [PF05970.16, score=115.8]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=49.7, Expect=1e-05]} {Celegans: WBGene00018020, F33H12.6, [Score=295, Expect=1e-83]} {Smed: dd_Smed_v6_91935_0_1, dd_Smed_v6_91935_0_1, [RH, Score=106, Expect=1e-26]} {RNA1509_37249} {RNA1310_981} {RNA815_15863}
7. MligTC455_57166 7 0.15 Mlig455_028302

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_028302 {REF} {Length: 467} {NoTransDecoderORF} {RNA1509_34563} {RNA1310_58476} {RNA815_37505}
8. MligTC455_16280 3 0.05 Mlig455_025840

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_025840 {REF} {Length: 942} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=20.9]} {RNA1310_114442}
9. MligTC455_04142 25 0.52 Mlig455_035034, Mlig455_035041, Mlig455_053432

Neo: -

Age: -

 ANKRD28 0.956 - - - - 0.956 -

Mlig455_035034 {REF} {Length: 3334} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=445.0]; Ankyrin repeats (many copies) [PF13637.8, score=368.8]; Ankyrin repeat [PF00023.32, score=323.3]; Ankyrin repeats (many copies) [PF13857.8, score=314.5]; Ankyrin repeat [PF13606.8, score=297.5]} {Human: ENSG00000206560, ANKRD28, ankyrin repeat domain 28, [RH, Score=769, Expect=0.0]; ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [RH, Score=741, Expect=0.0]} {Mouse: ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [RH, Score=767, Expect=0.0]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=252, Expect=4e-68]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=236, Expect=3e-64]} {Smed: dd_Smed_v6_7952_0_1, dd_Smed_v6_7952_0_1, [RH, Score=520, Expect=9e-167]} {RNA1509_4645} {RNA1310_3798.1, RNA1509_4645} {RNA1509_4645, RNA815_1702}

Mlig455_035041 {REF} {Length: 3306} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=444.6]; Ankyrin repeats (many copies) [PF13637.8, score=368.8]; Ankyrin repeat [PF00023.32, score=322.9]; Ankyrin repeats (many copies) [PF13857.8, score=314.4]; Ankyrin repeat [PF13606.8, score=296.8]} {Human: ENSG00000206560, ANKRD28, ankyrin repeat domain 28, [RH, Score=769, Expect=0.0]; ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [RH, Score=742, Expect=0.0]} {Mouse: ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [RH, Score=767, Expect=0.0]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=254, Expect=1e-68]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=238, Expect=6e-65]} {Smed: dd_Smed_v6_7952_0_1, dd_Smed_v6_7952_0_1, [RH, Score=521, Expect=5e-167]} {RNA1509_4645} {RNA1310_3798.1} {RNA815_1702}

Mlig455_053432 {REF} {Length: 3333} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=445.0]; Ankyrin repeats (many copies) [PF13637.8, score=368.8]; Ankyrin repeat [PF00023.32, score=323.3]; Ankyrin repeats (many copies) [PF13857.8, score=314.5]; Ankyrin repeat [PF13606.8, score=297.5]} {Human: ENSG00000206560, ANKRD28, ankyrin repeat domain 28, [RH, Score=769, Expect=0.0]; ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [RH, Score=741, Expect=0.0]} {Mouse: ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [RH, Score=767, Expect=0.0]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=251, Expect=6e-68]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=236, Expect=3e-64]} {Smed: dd_Smed_v6_7952_0_1, dd_Smed_v6_7952_0_1, [RH, Score=521, Expect=6e-167]} {RNA1509_4645} {RNA1310_3798.1} {RNA815_1702}
10. MligTC455_39452 312 6.5 Mlig455_006309, Mlig455_007633, Mlig455_032279, Mlig455_063014, Mlig455_063016

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 -

Mlig455_006309 {REF} {Length: 157} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}

Mlig455_007633 {REF} {Length: 3588} {Pfam: Phage integrase family [PF00589.24, score=23.0]} {RNA1509_4722} {RNA1310_655.1} {RNA815_335.1}

Mlig455_032279 {REF} {Length: 328} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}

Mlig455_063014 {REF} {Length: 3040} {RNA1509_32997} {RNA1310_7467} {RNA815_11709}

Mlig455_063016 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_32997} {RNA1310_7467} {RNA815_50376}
11. MligTC455_00626 4 0.08 Mlig455_037404

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_037404 {REF} {Length: 368} {NoTransDecoderORF}
12. MligTC455_55891 3 0.07 Mlig455_067346

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_067346 {REF} {Length: 146} {NoTransDecoderORF}
13. MligTC455_16277 3 0.06 Mlig455_030574

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_030574 {REF} {Length: 1076} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=22.4]} {RNA1509_52497} {RNA1310_114442} {RNA815_44555}
14. MligTC455_19243 94 1.96 Mlig455_048214

Neo: -

Age: -

Region-enriched R3: 3.438/0.03435
Region-enriched R5: 2.987/0.00981

 0.952 - - - - 0.952 - Mlig455_048214 {REF} {Length: 2496} {RNA1509_28510} {RNA1310_39619, RNA1509_28510} {RNA1509_28510, RNA815_161}
15. MligTC455_20085 208 4.33 Mlig455_034798

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.706

Region-enriched R4: 3.501/0.01114
Region-enriched R3: 3.474/0.00597

 DNASE1L3 0.951 - - - - 0.951 - Mlig455_034798 {REF} {Length: 1749} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=38.1]} {Human: ENSG00000163687, DNASE1L3, deoxyribonuclease 1 like 3, [RH, Score=184, Expect=2e-54]; ENSG00000167968, DNASE1L2, deoxyribonuclease 1 like 2, [RH, Score=183, Expect=4e-54]; ENSG00000213918, DNASE1, deoxyribonuclease 1, [RH, Score=181, Expect=1e-53]} {Mouse: ENSMUSG00000025279, Dnase1l3, deoxyribonuclease 1-like 3, [RH, Score=184, Expect=4e-54]; ENSMUSG00000024136, Dnase1l2, deoxyribonuclease 1-like 2, [RH, Score=178, Expect=2e-52]; ENSMUSG00000005980, Dnase1, deoxyribonuclease I, [RH, Score=178, Expect=3e-52]} {RNA1509_8194} {RNA1310_18116} {RNA815_13867}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA