M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_57166

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_57166 7 0.15 Mlig455_028302

Neo: -

Age: -

 Mlig455_028302 {REF} {Length: 467} {NoTransDecoderORF} {RNA1509_34563} {RNA1310_58476} {RNA815_37505}

Cumulative graph for MligTC455_57166

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_57166

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_57166 7 0.15 Mlig455_028302

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_028302 {REF} {Length: 467} {NoTransDecoderORF} {RNA1509_34563} {RNA1310_58476} {RNA815_37505}
2. MligTC455_20454 27 0.55 Mlig455_043192

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_043192 {REF} {Length: 897} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_38627}
3. MligTC455_10242 67 1.4 Mlig455_066064

Neo: -

Age: -

Region-enriched R4: 4.076/0.00784

 0.983 - - - - 0.983 - Mlig455_066064 {REF} {Length: 432} {NoTransDecoderORF} {RNA1509_10523} {RNA1310_103909} {RNA815_53302}
4. MligTC455_15519 101 2.1 Mlig455_034476, Mlig455_066229

Neo: -

Age: -

 0.973 - - - - 0.973 -

Mlig455_034476 {REF} {Length: 999} {NoTransDecoderORF} {RNA1310_84226}

Mlig455_066229 {REF} {Length: 1166} {NoTransDecoderORF} {RNA1310_84218} {RNA815_34411}
5. MligTC455_20773 2 0.05 Mlig455_012155

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_012155 {REF} {Length: 1509} {TRANSSPLICED} {Pfam: Nuf2 family [PF03800.16, score=19.8]} {RNA1509_42670} {RNA1310_22763.1} {RNA815_14177}
6. MligTC455_00626 4 0.08 Mlig455_037404

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_037404 {REF} {Length: 368} {NoTransDecoderORF}
7. MligTC455_42169 10 0.21 Mlig455_011127

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_011127 {REF} {Length: 413} {NoTransDecoderORF}
8. MligTC455_12038 6 0.12 Mlig455_036560, Mlig455_057786

Neo: -

Age: -

 0.97 - - - - 0.970 -

Mlig455_036560 {REF} {Length: 1679}

Mlig455_057786 {REF} {Length: 1814}
9. MligTC455_16280 3 0.05 Mlig455_025840

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_025840 {REF} {Length: 942} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=20.9]} {RNA1310_114442}
10. MligTC455_55891 3 0.07 Mlig455_067346

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_067346 {REF} {Length: 146} {NoTransDecoderORF}
11. MligTC455_16277 3 0.06 Mlig455_030574

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_030574 {REF} {Length: 1076} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=22.4]} {RNA1509_52497} {RNA1310_114442} {RNA815_44555}
12. MligTC455_38406 4 0.09 Mlig455_063475

Neo: -

Age: -

 ANKRD50 0.966 - - - - 0.966 - Mlig455_063475 {REF} {Length: 4390} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=47.3]; Ankyrin repeats (many copies) [PF13637.8, score=41.0]; Ankyrin repeat [PF13606.8, score=39.8]; Ankyrin repeat [PF00023.32, score=30.6]; Ankyrin repeats (many copies) [PF13857.8, score=28.6]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=60.1, Expect=2e-08]; ENSG00000107104, KANK1, KN motif and ankyrin repeat domains 1, [Score=58.2, Expect=4e-08]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=59.3, Expect=2e-08]; ENSMUSG00000032702, Kank1, KN motif and ankyrin repeat domains 1, [Score=59.3, Expect=3e-08]; ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=57.0, Expect=1e-07]} {Dmel: FBgn0031473, CG3104, [Score=50.8, Expect=4e-06]} {Smed: dd_Smed_v6_11252_0_1, dd_Smed_v6_11252_0_1, [Score=53.1, Expect=6e-07]} {RNA1509_58343} {RNA1310_18384} {RNA815_44377}
13. MligTC455_07569 28 0.59 Mlig455_066997

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_066997 {REF} {Length: 819} {RNA1509_50562} {RNA1310_122277}
14. MligTC455_13230 79 1.66 Mlig455_068366

Neo: Germline

Age: -

 0.965 - - - - 0.965 - Mlig455_068366 {REF} {Length: 698} {NoTransDecoderORF} {RNA1509_34277} {RNA1310_60780.2} {RNA815_64596}
15. MligTC455_16278 2 0.05 Mlig455_049413

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_049413 {REF} {Length: 1153} {Pfam: Ulp1 protease family, C-terminal catalytic domain [PF02902.21, score=20.1]} {RNA1509_52497} {RNA1310_108276} {RNA815_44555}
16. MligTC455_02586 18 0.38 Mlig455_027317

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.626

 0.963 - - - - 0.963 - Mlig455_027317 {REF} {Length: 1429} {TRANSSPLICED} {RNA1509_15660} {RNA1310_28914} {RNA815_2791.1}
17. MligTC455_43043 37 0.78 Mlig455_053011

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_053011 {REF} {Length: 3227} {RNA1509_10620} {RNA1310_36955} {RNA815_22686}
18. MligTC455_19243 94 1.96 Mlig455_048214

Neo: -

Age: -

Region-enriched R3: 3.438/0.03435
Region-enriched R5: 2.987/0.00981

 0.958 - - - - 0.958 - Mlig455_048214 {REF} {Length: 2496} {RNA1509_28510} {RNA1310_39619, RNA1509_28510} {RNA1509_28510, RNA815_161}
19. MligTC455_10359 45 0.93 Mlig455_001092

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_001092 {REF} {Length: 1830} {TRANSSPLICED} {RNA1310_35838.1} {RNA815_17439}
20. MligTC455_10253 5 0.11 Mlig455_063395

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_063395 {REF} {Length: 726} {NoTransDecoderORF} {RNA1310_48260}
21. MligTC455_10375 17 0.35 Mlig455_066826

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_066826 {REF} {Length: 668} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59624} {RNA1310_65491} {RNA815_10554.1}
22. MligTC455_08683 9 0.2 Mlig455_032855

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_032855 {REF} {Length: 406} {NoTransDecoderORF}
23. MligTC455_09937 8 0.17 Mlig455_012030

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_012030 {REF} {Length: 1435} {NoTransDecoderORF} {RNA1310_104540}
24. MligTC455_13128 16 0.34 Mlig455_049523, Mlig455_064147

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_049523 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_43103} {RNA1310_77607}

Mlig455_064147 {REF} {Length: 473} {NoTransDecoderORF} {RNA1509_43103} {RNA1310_77607}
25. MligTC455_56635 6 0.12 Mlig455_056715

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_056715 {REF} {Length: 222} {RNA1509_34547} {RNA1310_9062} {RNA815_6805}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA