M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43088

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43088 139 2.89 Mlig455_060075

Neo: -

Age: -

 Mlig455_060075 {REF} {Length: 3084} {Pfam: Homeodomain [PF00046.31, score=37.4]; Ubiquitin-like oligomerisation domain of SATB [PF16534.7, score=31.1]} {Dmel: FBgn0020307, dve, defective proventriculus, [RH, Score=102, Expect=2e-22]} {Celegans: WBGene00022861, dve-1, [RH, Score=82.8, Expect=1e-16]} {RNA1310_30262} {RNA815_49480}

Cumulative graph for MligTC455_43088

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.569 2.29 0.99956 1.00000
RegionR2 1.609 2.29 0.19747 0.55640
RegionR3 2.259 2.29 0.01938 0.23250
RegionR4 0.126 2.29 0.67992 0.97452
RegionR5 1.624 2.29 0.08755 0.27858
RegionR6 1.989 2.29 0.05208 0.42831
RegionR7 -4.22 2.29 0.99959 1.00000
RegionR8 2.182 2.29 0.14358 0.69234

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.562 2.29 0.99997 1.00000
RegenerationR2 0.905 2.29 0.20254 0.64877
RegenerationR3 -0.316 2.29 0.66691 0.93603
RegenerationR4 0.638 2.29 0.42032 0.82566
RegenerationR5 -0.411 2.29 0.53876 0.87905
RegenerationR6 0.58 2.29 0.41740 0.74922
RegenerationBL 1.307 2.29 0.33103 0.69737
RegenerationTP 1.188 2.29 0.47844 0.88685


Genes with expression patterns similar to MligTC455_43088

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43088 139 2.89 Mlig455_060075

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_060075 {REF} {Length: 3084} {Pfam: Homeodomain [PF00046.31, score=37.4]; Ubiquitin-like oligomerisation domain of SATB [PF16534.7, score=31.1]} {Dmel: FBgn0020307, dve, defective proventriculus, [RH, Score=102, Expect=2e-22]} {Celegans: WBGene00022861, dve-1, [RH, Score=82.8, Expect=1e-16]} {RNA1310_30262} {RNA815_49480}
2. MligTC455_36245 490 10.21 Mlig455_060055

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.650

 1.751 - - - - 0.788 0.963 Mlig455_060055 {REF} {Length: 582} {NoTransDecoderORF} {RNA1509_29797, RNA1509_55333} {RNA1310_38449, RNA1509_29797, RNA1509_55333} {RNA1509_29797, RNA1509_55333, RNA815_2803.2}
3. MligTC455_37179 83 1.73 Mlig455_012357

Neo: -

Age: -

 1.66 - - - 0.705 0.955 - Mlig455_012357 {REF} {Length: 466} {NoTransDecoderORF} {RNA1509_59553} {RNA1310_99471} {RNA815_41194.1}
4. MligTC455_14491 87 1.81 Mlig455_004000, Mlig455_030332

Neo: -

Age: -

 0.974 - - - - 0.974 -

Mlig455_004000 {REF} {Length: 3212} {RNA1509_45036} {RNA1310_28760.1, RNA1509_45036} {RNA1509_45036, RNA815_29529}

Mlig455_030332 {REF} {Length: 442} {NoTransDecoderORF} {RNA1509_45036} {RNA1310_10925.1}
5. MligTC455_48817 514 10.71 Mlig455_061147

Neo: -

Age: -

 MFSD5 0.959 - - - - - 0.959 Mlig455_061147 {REF} {Length: 2043} {Pfam: Sugar-tranasporters, 12 TM [PF05631.16, score=388.4]; Major Facilitator Superfamily [PF07690.18, score=72.3]} {Human: ENSG00000182544, MFSD5, major facilitator superfamily domain containing 5, [Score=197, Expect=6e-58]} {Mouse: ENSMUSG00000045665, Mfsd5, major facilitator superfamily domain containing 5, [Score=199, Expect=6e-59]} {Celegans: WBGene00021870, samt-1, SAM (S-Adenosyl Methionine) Transporter, [Score=433, Expect=1e-150]} {Smed: dd_Smed_v6_3699_0_1, dd_Smed_v6_3699_0_1, [Score=453, Expect=4e-158]} {RNA1509_7578} {RNA1310_9251} {RNA815_3171.1}
6. MligTC455_28362 852 17.75 Mlig455_031039, Mlig455_047027

Neo: -

Age: -

Region-enriched R5: 1.224/0.02131

Regeneration-upregulated R6: 2.337

Regeneration-enriched R6: 2.337

 RTL1 0.956 - - - 0.956 - -

Mlig455_031039 {REF} {Length: 9265} {TRANSSPLICED} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=31.5]; Zinc knuckle [PF13696.8, score=23.2]; Zinc knuckle [PF00098.25, score=22.9]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Mlig455_047027 {REF} {Length: 9661} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.4]; Integrase core domain [PF00665.28, score=46.7]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.8]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.4]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.4, Expect=5e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=1e-05]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=317, Expect=3e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}
7. MligTC455_35083 62 1.28 Mlig455_022633

Neo: Irradiation

Age: -

Region-enriched R5: 2.801/0.03372

 KIF14 0.956 - - - 0.956 - - Mlig455_022633 {REF} {Length: 3874} {TRANSSPLICED} {Pfam: Kinesin motor domain [PF00225.25, score=328.1]; Microtubule binding [PF16796.7, score=64.8]} {Human: ENSG00000118193, KIF14, kinesin family member 14, [Score=357, Expect=2e-102]} {Mouse: ENSMUSG00000041498, Kif14, kinesin family member 14, [Score=357, Expect=3e-102]} {Dmel: FBgn0004374, neb, nebbish, [Score=320, Expect=1e-91]} {Celegans: WBGene00006831, unc-104, Kinesin-like protein unc-104, [Score=290, Expect=2e-80]} {Smed: dd_Smed_v6_7089_0_1, dd_Smed_v6_7089_0_1, [Score=290, Expect=7e-81]} {RNA1509_8095} {RNA1310_2684, RNA1509_8095} {RNA1509_8095, RNA815_4220}
8. MligTC455_38618 205 4.27 Mlig455_035364

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_035364 {REF} {Length: 1200} {RNA1509_53426} {RNA1310_51025} {RNA815_42531}
9. MligTC455_37017 345 7.2 Mlig455_035238

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_035238 {REF} {Length: 1969} {TRANSSPLICED} {Pfam: Profilin [PF00235.21, score=70.1]} {Celegans: WBGene00003991, pfn-3, Profilin-3, [Score=50.4, Expect=9e-09]} {RNA1509_18199, RNA1509_28431} {RNA1310_37032.1, RNA1509_28431} {RNA1509_28431, RNA815_15418}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA