TomoSeq data search

Data search

Results for MligTC455_43191

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_43191	1655	34.47	Mlig455_016868, Mlig455_016872	Neo: - Age: logFC(26M/2M)=0.657 Region-enriched R3: 1.109/0.00086		Mlig455_016868 {REF} {Length: 1193} {RNA1509_38068} {RNA1310_40200, RNA1509_38068} {RNA1509_38068, RNA815_19109.1} Mlig455_016872 {REF} {Length: 1107} {TRANSSPLICED} {RNA1509_28597, RNA1509_38068, RNA1509_38649} {RNA1310_40200, RNA1509_28597, RNA1509_38649} {RNA1509_28597, RNA1509_38649, RNA815_19109.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_43191

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.408	5.325	0.07844	0.61319
RegionR2	0.052	5.325	0.87477	1.00000
RegionR3	1.109	5.325	0.00001	0.00086
RegionR4	0.422	5.325	0.18314	0.45466
RegionR5	-0.418	5.325	0.13680	0.37893
RegionR6	0.487	5.325	0.07807	0.51828
RegionR7	-0.28	5.325	0.44438	1.00000
RegionR8	0.036	5.325	0.93110	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.04	5.325	0.31441	1.00000
RegenerationR2	-0.752	5.325	0.01199	0.17858
RegenerationR3	-0.413	5.325	0.17002	0.60495
RegenerationR4	-0.207	5.325	0.51544	0.87757
RegenerationR5	-0.074	5.325	0.81528	0.99293
RegenerationR6	-0.462	5.325	0.14883	0.47281
RegenerationBL	-1.256	5.325	0.00223	0.03895
RegenerationTP	0.904	5.325	0.01202	0.18641

Genes with expression patterns similar to MligTC455_43191

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_43191	1655	34.47	Mlig455_016868, Mlig455_016872	Neo: - Age: logFC(26M/2M)=0.657 Region-enriched R3: 1.109/0.00086		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_016868 {REF} {Length: 1193} {RNA1509_38068} {RNA1310_40200, RNA1509_38068} {RNA1509_38068, RNA815_19109.1} Mlig455_016872 {REF} {Length: 1107} {TRANSSPLICED} {RNA1509_28597, RNA1509_38068, RNA1509_38649} {RNA1310_40200, RNA1509_28597, RNA1509_38649} {RNA1509_28597, RNA1509_38649, RNA815_19109.1}
2.	MligTC455_21921	274	5.71	Mlig455_051476	Neo: - Age: - Region-enriched R2: 2.454/0.02341	GRIK3	0.954	-	-	-	-	-	0.954	Mlig455_051476 {REF} {Length: 4017} {Pfam: Ligand-gated ion channel [PF00060.28, score=178.0]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=134.9]; Receptor family ligand binding region [PF01094.30, score=89.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=70.1]; Periplasmic binding protein [PF13458.8, score=19.4]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=606, Expect=0.0]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=605, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=584, Expect=0.0]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=610, Expect=0.0]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=604, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=589, Expect=0.0]} {Dmel: FBgn0038837, CG3822, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=455, Expect=5e-146]} {Smed: dd_Smed_v6_4267_0_7, dd_Smed_v6_4267_0_7, [RH, Score=642, Expect=0.0]} {RNA1509_12744, RNA1509_44431, RNA1509_57402} {RNA1310_4145.2, RNA1509_12744, RNA1509_44431, RNA1509_57402} {RNA1509_12744, RNA1509_44431, RNA1509_57402, RNA815_1968.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_43191

1655

34.47

Mlig455_016868, Mlig455_016872

Neo: -

Age: logFC(26M/2M)=0.657

Region-enriched R3: 1.109/0.00086

1.000

Mlig455_016868 {REF} {Length: 1193} {RNA1509_38068} {RNA1310_40200, RNA1509_38068} {RNA1509_38068, RNA815_19109.1}

Mlig455_016872 {REF} {Length: 1107} {TRANSSPLICED} {RNA1509_28597, RNA1509_38068, RNA1509_38649} {RNA1310_40200, RNA1509_28597, RNA1509_38649} {RNA1509_28597, RNA1509_38649, RNA815_19109.1}

MligTC455_21921

274

5.71

Mlig455_051476

Neo: -

Age: -

Region-enriched R2: 2.454/0.02341

GRIK3

0.954

Mlig455_051476 {REF} {Length: 4017} {Pfam: Ligand-gated ion channel [PF00060.28, score=178.0]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=134.9]; Receptor family ligand binding region [PF01094.30, score=89.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=70.1]; Periplasmic binding protein [PF13458.8, score=19.4]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=606, Expect=0.0]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=605, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=584, Expect=0.0]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=610, Expect=0.0]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=604, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=589, Expect=0.0]} {Dmel: FBgn0038837, CG3822, [RH, Score=648, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=455, Expect=5e-146]} {Smed: dd_Smed_v6_4267_0_7, dd_Smed_v6_4267_0_7, [RH, Score=642, Expect=0.0]} {RNA1509_12744, RNA1509_44431, RNA1509_57402} {RNA1310_4145.2, RNA1509_12744, RNA1509_44431, RNA1509_57402} {RNA1509_12744, RNA1509_44431, RNA1509_57402, RNA815_1968.1}