M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43394

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43394 37 0.78 Mlig455_036609

Neo: -

Age: -

 Mlig455_036609 {REF} {Length: 213} {NoTransDecoderORF} {RNA1310_36062} {RNA815_46858}

Cumulative graph for MligTC455_43394

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.171 1.374 1.00000 1.00000
RegionR2 -0.919 1.374 0.95731 1.00000
RegionR3 0.71 1.374 0.59941 1.00000
RegionR4 3.682 1.374 0.04871 0.18934
RegionR5 0.94 1.374 0.48619 0.84961
RegionR6 -1.187 1.374 0.96467 1.00000
RegionR7 -0.052 1.374 0.84514 1.00000
RegionR8 -3.002 1.374 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.299 1.374 0.99988 1.00000
RegenerationR2 -0.166 1.374 0.87822 1.00000
RegenerationR3 -0.389 1.374 0.63799 0.92414
RegenerationR4 -0.372 1.374 0.66014 0.93815
RegenerationR5 -0.512 1.374 0.62053 0.91923
RegenerationR6 0.155 1.374 0.93687 1.00000
RegenerationBL -2.422 1.374 1.00000 1.00000
RegenerationTP 0.028 1.374 0.83937 1.00000


Genes with expression patterns similar to MligTC455_43394

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43394 37 0.78 Mlig455_036609

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_036609 {REF} {Length: 213} {NoTransDecoderORF} {RNA1310_36062} {RNA815_46858}
2. MligTC455_43395 39 0.81 Mlig455_036648

Neo: -

Age: -

 3.975 - - 1.000 0.995 0.982 0.998 Mlig455_036648 {REF} {Length: 1263} {RNA1310_36062} {RNA815_46858}
3. MligTC455_44920 17 0.35 Mlig455_040610

Neo: -

Age: Up-Down-Up

 1.762 - - - - 0.992 0.770 Mlig455_040610 {REF} {Length: 3319} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=41.9]} {RNA1509_29695} {RNA1310_5477} {RNA815_3488}
4. MligTC455_35908 798 16.62 Mlig455_029724

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 6.384

Region-enriched R4: 3.056/0.03988

 TTLL10 1.727 - - - - 0.962 0.765 Mlig455_029724 {REF} {Length: 3159} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=88.4]; YheC/D like ATP-grasp [PF14398.8, score=19.2]} {Human: ENSG00000162571, TTLL10, tubulin tyrosine ligase like 10, [Score=99.0, Expect=4e-21]} {Mouse: ENSMUSG00000029074, Ttll10, tubulin tyrosine ligase-like family, member 10, [Score=104, Expect=2e-23]} {Dmel: FBgn0052238, CG32238, [Score=69.3, Expect=3e-12]} {Celegans: WBGene00014232, ttll-4, Tubulin polyglutamylase ttll-4, [Score=52.4, Expect=6e-07]} {Smed: dd_Smed_v6_9664_0_1, dd_Smed_v6_9664_0_1, [Score=117, Expect=1e-27]} {RNA1509_19049} {RNA1310_8962} {RNA815_5112}
5. MligTC455_35013 156 3.25 Mlig455_012810

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.428

Region-enriched R5: 1.838/0.04002

 TPRG1L 1.671 - - 0.959 0.712 - - Mlig455_012810 {REF} {Length: 2678} {TRANSSPLICED} {Pfam: Inositol phosphatase [PF12456.10, score=45.6]} {Human: ENSG00000158109, TPRG1L, tumor protein p63 regulated 1 like, [Score=110, Expect=1e-28]} {Mouse: ENSMUSG00000029030, Tprgl, transformation related protein 63 regulated like, [Score=105, Expect=3e-27]} {Smed: dd_Smed_v6_2044_0_1, dd_Smed_v6_2044_0_1, [Score=114, Expect=7e-31]} {RNA1509_40387, RNA1509_49554} {RNA1310_20350.1, RNA1509_49554} {RNA1509_49554, RNA815_14505}
6. MligTC455_05958 6 0.12 Mlig455_045904

Neo: -

Age: -

 0.998 - - - - 0.998 - Mlig455_045904 {REF} {Length: 260} {NoTransDecoderORF}
7. MligTC455_16625 45 0.94 Mlig455_019351

Neo: -

Age: -

Region-enriched R3: 4.565/0.00157

 0.99 - - - - 0.990 - Mlig455_019351 {REF} {Length: 2232} {Pfam: NAD dependent epimerase/dehydratase family [PF01370.23, score=38.9]; Male sterility protein [PF07993.14, score=34.4]; 3-beta hydroxysteroid dehydrogenase/isomerase family [PF01073.21, score=30.8]; RmlD substrate binding domain [PF04321.19, score=21.9]; GDP-mannose 4,6 dehydratase [PF16363.7, score=19.1]} {Smed: dd_Smed_v6_12075_0_1, dd_Smed_v6_12075_0_1, [Score=56.6, Expect=9e-09]} {RNA1509_44711} {RNA1310_30985} {RNA815_13916}
8. MligTC455_13512 156 3.24 Mlig455_020307

Neo: -

Age: -

 CNGA3 0.988 - - - 0.988 - - Mlig455_020307 {REF} {Length: 3017} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=63.0]; Ion transport protein [PF00520.33, score=56.3]} {Human: ENSG00000144191, CNGA3, cyclic nucleotide gated channel alpha 3, [Score=430, Expect=3e-138]; ENSG00000183862, CNGA2, cyclic nucleotide gated channel alpha 2, [Score=412, Expect=6e-132]; ENSG00000198515, CNGA1, cyclic nucleotide gated channel alpha 1, [Score=412, Expect=2e-131]} {Mouse: ENSMUSG00000026114, Cnga3, cyclic nucleotide gated channel alpha 3, [Score=414, Expect=6e-133]; ENSMUSG00000067220, Cnga1, cyclic nucleotide gated channel alpha 1, [Score=410, Expect=6e-131]; ENSMUSG00000005864, Cnga2, cyclic nucleotide gated channel alpha 2, [Score=402, Expect=3e-128]} {Dmel: FBgn0259145, CG42260, [RH, Score=652, Expect=0.0]} {Celegans: WBGene00006526, tax-4, Cyclic nucleotide-gated cation channel, [Score=352, Expect=7e-109]} {Smed: dd_Smed_v6_22398_0_1, dd_Smed_v6_22398_0_1, [Score=404, Expect=1e-129]} {RNA1509_58266} {RNA1310_19338} {RNA815_12776}
9. MligTC455_12850 218 4.54 Mlig455_023234, Mlig455_023300

Neo: -

Age: logFC(26M/2M)=0.710

Region-enriched R3: 4.577/0.00001
Region-enriched R4: 4.285/0.00027

 0.979 - - - - 0.979 -

Mlig455_023234 {REF} {Length: 1028} {Pfam: Lipase (class 2) [PF01674.20, score=119.2]} {Celegans: WBGene00011725, lips-5, LIPaSe related, [Score=130, Expect=4e-37]} {RNA1509_38856} {RNA1310_33908} {RNA815_16748}

Mlig455_023300 {REF} {Length: 1050} {Pfam: Lipase (class 2) [PF01674.20, score=191.0]} {Celegans: WBGene00011725, lips-5, LIPaSe related, [RH, Score=179, Expect=6e-54]} {RNA1509_38856} {RNA1310_33908, RNA1509_38856} {RNA1509_38856, RNA815_16748}
10. MligTC455_42922 1184 24.67 Mlig455_026345

Neo: -

Age: logFC(26M/2M)=0.973

Region-enriched R3: 3.300/0.00000
Region-enriched R4: 1.908/0.02891

 0.969 - - - - 0.969 - Mlig455_026345 {REF} {Length: 2368} {Pfam: Group 7 allergen [PF16984.7, score=52.6]} {RNA1509_14255} {RNA1310_17894, RNA1509_14255} {RNA1509_14255, RNA815_9024}
11. MligTC455_04221 189 3.93 Mlig455_036494, Mlig455_037536

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=2.401

 0.968 - - - 0.968 - -

Mlig455_036494 {REF} {Length: 1287} {Pfam: Innexin [PF00876.20, score=336.4]} {Dmel: FBgn0085387, shakB, shaking B, [RH, Score=113, Expect=4e-27]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=231, Expect=1e-70]} {Smed: dd_Smed_v6_10766_0_1, dd_Smed_v6_10766_0_1, [RH, Score=357, Expect=6e-119]} {RNA1509_17737} {RNA1310_16884} {RNA815_8573}

Mlig455_037536 {REF} {Length: 1859} {Pfam: Innexin [PF00876.20, score=336.4]} {Dmel: FBgn0085387, shakB, shaking B, [RH, Score=113, Expect=4e-27]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=231, Expect=1e-70]} {Smed: dd_Smed_v6_10766_0_1, dd_Smed_v6_10766_0_1, [RH, Score=357, Expect=6e-119]} {RNA1509_17737} {RNA1310_16884} {RNA815_8573}
12. MligTC455_11360 156 3.24 Mlig455_000789

Neo: -

Age: Down-Up-Down

 LRP8 0.966 - - - - 0.966 - Mlig455_000789 {REF} {Length: 4780} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=45.1]} {Human: ENSG00000157193, LRP8, LDL receptor related protein 8, [Score=75.1, Expect=2e-13]; ENSG00000168702, LRP1B, LDL receptor related protein 1B, [Score=73.9, Expect=1e-12]; ENSG00000130164, LDLR, low density lipoprotein receptor, [Score=73.9, Expect=5e-13]; ENSG00000137642, SORL1, sortilin related receptor 1, [Score=72.0, Expect=2e-12]} {Mouse: ENSMUSG00000028613, Lrp8, low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, [Score=74.7, Expect=2e-13]; ENSMUSG00000049313, Sorl1, sortilin-related receptor, LDLR class A repeats-containing, [Score=71.6, Expect=3e-12]} {Dmel: FBgn0004649, yl, yolkless, [Score=68.6, Expect=2e-11]} {Celegans: WBGene00015083, egg-1, EGG sterile (Unfertilizable), [Score=73.9, Expect=2e-13]} {Smed: dd_Smed_v6_9829_0_1, dd_Smed_v6_9829_0_1, [Score=67.4, Expect=2e-11]} {RNA1509_15509, RNA1509_19720} {RNA1310_7577, RNA1509_19720} {RNA1509_19720, RNA815_6380}
13. MligTC455_31631 977 20.36 Mlig455_038575

Neo: -

Age: -

Region-enriched R3: 3.163/0.00000
Region-enriched R4: 1.482/0.02038

 0.963 - - - - 0.963 - Mlig455_038575 {REF} {Length: 1498} {Smed: dd_Smed_v6_279_0_1, dd_Smed_v6_279_0_1, [RH, Score=178, Expect=6e-51]} {RNA1509_14693, RNA1509_21145} {RNA1310_23343, RNA1509_14693} {RNA1509_14693, RNA815_10091}
14. MligTC455_34819 168 3.5 Mlig455_010505, Mlig455_061873

Neo: -

Age: Up-Down-Down

 QRFPR 0.962 - - - 0.962 - -

Mlig455_010505 {REF} {Length: 4092} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=158.0]; Olfactory receptor [PF13853.8, score=19.8]} {Human: ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [RH, Score=166, Expect=1e-45]} {Mouse: ENSMUSG00000029917, C130060K24Rik, RIKEN cDNA C130060K24 gene, [RH, Score=150, Expect=3e-40]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=137, Expect=2e-34]} {Celegans: WBGene00007635, npr-4, NeuroPeptide Receptor family, [Score=122, Expect=4e-30]} {Smed: dd_Smed_v6_22952_0_1, dd_Smed_v6_22952_0_1, [Score=194, Expect=4e-57]} {RNA1310_26846} {RNA815_28382}

Mlig455_061873 {REF} {Length: 3092} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=131.2]; Olfactory receptor [PF13853.8, score=19.8]} {Human: ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [Score=131, Expect=4e-33]} {Mouse: ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=115, Expect=1e-27]; ENSMUSG00000028004, Npy2r, neuropeptide Y receptor Y2, [Score=112, Expect=4e-27]; ENSMUSG00000020090, Npffr1, neuropeptide FF receptor 1, [Score=112, Expect=1e-26]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=112, Expect=5e-26]} {Celegans: WBGene00016110, npr-11, Putative neuropeptide Y receptor 11, [Score=103, Expect=5e-24]} {Smed: dd_Smed_v6_22952_0_1, dd_Smed_v6_22952_0_1, [Score=162, Expect=4e-45]} {RNA1310_26846} {RNA815_28382}
15. MligTC455_39210 56 1.16 Mlig455_061908

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_061908 {REF} {Length: 2036} {RNA1509_51310} {RNA1310_26948} {RNA815_26428}
16. MligTC455_39848 56 1.17 Mlig455_054043

Neo: -

Age: Up-Up-Down

Regeneration-upregulated R2: 5.237

Regeneration-enriched R2: 5.237

 0.962 - - - 0.962 - - Mlig455_054043 {REF} {Length: 1977} {RNA1509_56874} {RNA1310_21214, RNA1509_56874} {RNA1509_56874, RNA815_34869}
17. MligTC455_13372 54 1.13 Mlig455_003666, Mlig455_003876

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=1.830

Region-enriched R4: 5.705/0.00171

 0.961 - - - - 0.961 -

Mlig455_003666 {REF} {Length: 2129} {RNA1310_43536} {RNA815_30577}

Mlig455_003876 {REF} {Length: 2738} {RNA1310_27600.1} {RNA815_30577}
18. MligTC455_28753 64 1.32 Mlig455_018409, Mlig455_067736, Mlig455_069521

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_018409 {REF} {Length: 979} {RNA1509_27801} {RNA1310_32897} {RNA815_15953.2}

Mlig455_067736 {REF} {Length: 1136} {RNA1509_13494} {RNA1310_32897} {RNA815_15953.1}

Mlig455_069521 {REF} {Length: 982} {RNA1509_27801} {RNA1310_32897} {RNA815_15953.2}
19. MligTC455_33982 83 1.72 Mlig455_013707, Mlig455_013726

Neo: -

Age: -

 0.956 - - - - 0.956 -

Mlig455_013707 {REF} {Length: 1699} {RNA1310_16077} {RNA815_21186}

Mlig455_013726 {REF} {Length: 1708} {RNA1310_16077} {RNA815_21186}
20. MligTC455_25082 424 8.84 Mlig455_012948, Mlig455_012957

Neo: -

Age: -

 0.955 - - 0.955 - - -

Mlig455_012948 {REF} {Length: 4485} {TRANSSPLICED} {RNA1509_30362} {RNA1310_30094} {RNA815_13242}

Mlig455_012957 {REF} {Length: 4141} {TRANSSPLICED} {RNA1509_30362, RNA1509_48752} {RNA1310_30094, RNA1509_48752} {RNA1509_48752, RNA815_13242}
21. MligTC455_53055 150 3.12 Mlig455_016633

Neo: -

Age: -

Region-enriched R3: 2.528/0.00563

 0.955 - - - - 0.955 - Mlig455_016633 {REF} {Length: 2904} {Smed: dd_Smed_v6_500_0_1, dd_Smed_v6_500_0_1, [Score=65.5, Expect=1e-11]} {RNA1509_54966} {RNA1310_945.1} {RNA815_1511.1}
22. MligTC455_53421 5281 110.01 Mlig455_034344, Mlig455_050084

Neo: -

Age: logFC(26M/2M)=1.460

Region-enriched R3: 3.169/0.00000
Region-enriched R4: 1.796/0.04672
Region-enriched R5: 1.697/0.02295

 PLB1 0.955 - - - - 0.955 -

Mlig455_034344 {REF} {Length: 1774} {Pfam: GDSL-like Lipase/Acylhydrolase [PF00657.24, score=87.6]; GDSL-like Lipase/Acylhydrolase family [PF13472.8, score=39.6]} {Human: ENSG00000163803, PLB1, phospholipase B1, [Score=289, Expect=2e-92]} {Mouse: ENSMUSG00000029134, Plb1, phospholipase B1, [Score=278, Expect=1e-82]} {Dmel: FBgn0031735, CG11029, [RH, Score=216, Expect=4e-65]} {Celegans: WBGene00008621, F09C8.1, [RH, Score=238, Expect=2e-74]} {Smed: dd_Smed_v6_2690_0_1, dd_Smed_v6_2690_0_1, [Score=248, Expect=6e-78]} {RNA1509_1040, RNA1509_19138} {RNA1310_23447, RNA1509_19138} {RNA1509_19138, RNA815_9487}

Mlig455_050084 {REF} {Length: 1955} {Pfam: GDSL-like Lipase/Acylhydrolase [PF00657.24, score=82.8]; GDSL-like Lipase/Acylhydrolase family [PF13472.8, score=41.1]} {Human: ENSG00000163803, PLB1, phospholipase B1, [Score=287, Expect=1e-85]} {Mouse: ENSMUSG00000029134, Plb1, phospholipase B1, [Score=273, Expect=1e-83]} {Dmel: FBgn0031735, CG11029, [RH, Score=214, Expect=3e-64]} {Celegans: WBGene00012201, W02B12.1, [RH, Score=225, Expect=1e-69]} {Smed: dd_Smed_v6_2690_0_1, dd_Smed_v6_2690_0_1, [Score=247, Expect=9e-78]} {RNA1509_1040} {RNA1310_23447} {RNA815_9487}
23. MligTC455_06204 24 0.51 Mlig455_045691

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_045691 {REF} {Length: 416} {NoTransDecoderORF} {RNA1310_44363} {RNA815_20199}
24. MligTC455_15008 345 7.19 Mlig455_069659

Neo: -

Age: -

Region-enriched R3: 6.285/0.00000
Region-enriched R4: 2.829/0.04013

 0.954 - - - - 0.954 - Mlig455_069659 {REF} {Length: 394} {NoTransDecoderORF} {RNA1310_75754} {RNA815_50709.2}
25. MligTC455_40036 9 0.19 Mlig455_027002

Neo: -

Age: -

 KCNK18 0.954 - - - - 0.954 - Mlig455_027002 {REF} {Length: 3523} {Pfam: Ion channel [PF07885.18, score=113.3]; Ion transport protein [PF00520.33, score=30.5]} {Human: ENSG00000186795, KCNK18, potassium two pore domain channel subfamily K member 18, [Score=84.0, Expect=1e-16]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=85.9, Expect=2e-17]} {Dmel: FBgn0033257, sand, sandman, [RH, Score=144, Expect=4e-37]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=164, Expect=2e-44]} {Smed: dd_Smed_v6_13333_0_1, dd_Smed_v6_13333_0_1, [RH, Score=213, Expect=2e-61]} {RNA1509_52667} {RNA1310_10381} {RNA815_59005}
26. MligTC455_18227 82 1.71 Mlig455_014781

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_014781 {REF} {Length: 4541} {Pfam: Ankyrin repeats (many copies) [PF13857.8, score=26.2]; Mab-21 protein [PF03281.16, score=25.9]} {RNA1509_35479} {RNA1310_2311.1} {RNA815_13099}
27. MligTC455_42128 360 7.51 Mlig455_014669

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.718

Region-enriched R3: 6.879/0.00000

 MRC1 0.952 - - - - 0.952 - Mlig455_014669 {REF} {Length: 1514} {Pfam: Lectin C-type domain [PF00059.23, score=95.0]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=20.2]} {Human: ENSG00000260314, MRC1, mannose receptor C-type 1, [Score=77.4, Expect=4e-15]; ENSG00000130287, NCAN, neurocan, [Score=75.1, Expect=2e-14]} {Mouse: ENSMUSG00000002341, Ncan, neurocan, [Score=73.9, Expect=4e-14]} {Celegans: WBGene00012253, clec-50, C-type LECtin, [Score=61.2, Expect=2e-10]} {Smed: dd_Smed_v6_2649_0_2, dd_Smed_v6_2649_0_2, [Score=50.8, Expect=5e-07]} {RNA1509_35559} {RNA1310_32168.1} {RNA815_14861}
28. MligTC455_35909 812 16.92 Mlig455_034871

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.312

 TTLL10 0.951 - - - - 0.951 - Mlig455_034871 {REF} {Length: 3062} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=88.4]; YheC/D like ATP-grasp [PF14398.8, score=19.2]} {Human: ENSG00000162571, TTLL10, tubulin tyrosine ligase like 10, [Score=99.0, Expect=4e-21]} {Mouse: ENSMUSG00000029074, Ttll10, tubulin tyrosine ligase-like family, member 10, [Score=104, Expect=2e-23]} {Dmel: FBgn0052238, CG32238, [Score=69.3, Expect=3e-12]} {Celegans: WBGene00014232, ttll-4, Tubulin polyglutamylase ttll-4, [Score=52.4, Expect=6e-07]} {Smed: dd_Smed_v6_9664_0_1, dd_Smed_v6_9664_0_1, [Score=117, Expect=1e-27]} {RNA1509_19049, RNA1509_5087} {RNA1310_8962, RNA1509_19049, RNA1509_5087} {RNA1509_19049, RNA1509_5087, RNA815_5112}
29. MligTC455_09476 19 0.39 Mlig455_009290

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_009290 {REF} {Length: 2926} {RNA1509_32111} {RNA1310_47329.2} {RNA815_25064}
30. MligTC455_37047 45 0.94 Mlig455_046180

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_046180 {REF} {Length: 1686} {RNA1310_140241} {RNA815_12716}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA