M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43501

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43501 42 0.88 Mlig455_037513

Neo: -

Age: -

Regeneration-downregulated R2: -3.018

Regeneration-depleted R2: -3.018

 Mlig455_037513 {REF} {Length: 1296} {Pfam: Cell-cycle alteration and expression-elevated protein in tumour [PF16566.7, score=21.6]; Centrosome localisation domain of Cep57 [PF14073.8, score=19.1]} {RNA1509_30182} {RNA1310_25153} {RNA815_26901}

Cumulative graph for MligTC455_43501

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.482 1.238 0.99975 1.00000
RegionR2 3.36 1.238 0.05788 0.28929
RegionR3 -1.19 1.238 0.99982 1.00000
RegionR4 2.823 1.238 0.06496 0.22996
RegionR5 2.582 1.238 0.06879 0.23523
RegionR6 1.082 1.238 0.37421 0.95486
RegionR7 -2.238 1.238 0.99994 1.00000
RegionR8 -1.936 1.238 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.453 1.238 0.99992 1.00000
RegenerationR2 -3.018 1.238 0.00007 0.00972 Specific for R2: -3.018
RegenerationR3 2.136 1.238 0.12699 0.54859
RegenerationR4 -0.994 1.238 0.52019 0.87933
RegenerationR5 -0.299 1.238 0.88456 1.00000
RegenerationR6 0.358 1.238 0.77798 0.96657
RegenerationBL 2.052 1.238 0.33369 0.70014
RegenerationTP 2.852 1.238 0.31476 0.75957


Genes with expression patterns similar to MligTC455_43501

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43501 42 0.88 Mlig455_037513

Neo: -

Age: -

Regeneration-downregulated R2: -3.018

Regeneration-depleted R2: -3.018

 2 - - 1.000 - - 1.000 Mlig455_037513 {REF} {Length: 1296} {Pfam: Cell-cycle alteration and expression-elevated protein in tumour [PF16566.7, score=21.6]; Centrosome localisation domain of Cep57 [PF14073.8, score=19.1]} {RNA1509_30182} {RNA1310_25153} {RNA815_26901}
2. MligTC455_51806 83 1.73 Mlig455_037702, Mlig455_046362

Neo: -

Age: -

 GPSM2 0.986 - - 0.986 - - -

Mlig455_037702 {REF} {Length: 3216} {Pfam: Tetratricopeptide repeat [PF13424.8, score=100.7]; Tetratricopeptide repeat [PF13176.8, score=98.7]; Tetratricopeptide repeat [PF00515.30, score=93.3]; GoLoco motif [PF02188.19, score=66.5]; Tetratricopeptide repeat [PF07719.19, score=54.7]; Tetratricopeptide repeat [PF13181.8, score=43.2]; Tetratricopeptide repeat [PF13374.8, score=34.5]; Rapsyn N-terminal myristoylation and linker region [PF10579.11, score=20.8]} {Human: ENSG00000121957, GPSM2, G protein signaling modulator 2, [RH, Score=521, Expect=3e-176]} {Mouse: ENSMUSG00000026930, Gpsm1, G-protein signalling modulator 1 (AGS3-like, C. elegans), [RH, Score=494, Expect=2e-166]} {Dmel: FBgn0040080, pins, partner of inscuteable, [RH, Score=534, Expect=0.0]} {Celegans: WBGene00000092, ags-3, Activator of G protein Signalling, [Score=256, Expect=4e-76]} {Smed: dd_Smed_v6_6548_1_1, dd_Smed_v6_6548_1_1, [RH, Score=462, Expect=3e-154]} {RNA1310_18538} {RNA815_41322}

Mlig455_046362 {REF} {Length: 3324} {Pfam: Tetratricopeptide repeat [PF13424.8, score=119.4]; Tetratricopeptide repeat [PF13176.8, score=96.3]; Tetratricopeptide repeat [PF00515.30, score=93.0]; GoLoco motif [PF02188.19, score=85.6]; Tetratricopeptide repeat [PF07719.19, score=54.4]; Tetratricopeptide repeat [PF13181.8, score=42.7]; Tetratricopeptide repeat [PF13374.8, score=34.2]; Rapsyn N-terminal myristoylation and linker region [PF10579.11, score=21.7]} {Human: ENSG00000121957, GPSM2, G protein signaling modulator 2, [Score=545, Expect=0.0]} {Mouse: ENSMUSG00000027883, Gpsm2, G-protein signalling modulator 2 (AGS3-like, C. elegans), [RH, Score=535, Expect=0.0]} {Dmel: FBgn0040080, pins, partner of inscuteable, [RH, Score=531, Expect=1e-180]} {Celegans: WBGene00000092, ags-3, Activator of G protein Signalling, [RH, Score=266, Expect=1e-79]} {Smed: dd_Smed_v6_6548_1_1, dd_Smed_v6_6548_1_1, [RH, Score=474, Expect=1e-158]} {RNA1310_18538} {RNA815_41322}
3. MligTC455_37760 15 0.3 Mlig455_014788

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_014788 {REF} {Length: 2694} {Pfam: CUB domain [PF00431.22, score=48.3]} {RNA1310_77188}
4. MligTC455_37509 85 1.77 Mlig455_048299

Neo: -

Age: -

Region-enriched R2: 5.741/0.03019

 SALL4 0.961 - - 0.961 - - - Mlig455_048299 {REF} {Length: 1020} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=33.5]; C2H2-type zinc finger [PF13894.8, score=31.4]; Zinc-finger of C2H2 type [PF12874.9, score=30.1]; Zinc-finger double domain [PF13465.8, score=26.1]} {Human: ENSG00000101115, SALL4, spalt like transcription factor 4, [Score=80.9, Expect=6e-17]; ENSG00000256463, SALL3, spalt like transcription factor 3, [Score=79.0, Expect=3e-16]; ENSG00000277015, SALL3, spalt like transcription factor 3, [Score=79.0, Expect=3e-16]; ENSG00000263310, SALL3, spalt like transcription factor 3, [Score=78.6, Expect=4e-16]; ENSG00000103449, SALL1, spalt like transcription factor 1, [Score=78.2, Expect=7e-16]} {Mouse: ENSMUSG00000027547, Sall4, spalt like transcription factor 4, [Score=80.9, Expect=5e-17]; ENSMUSG00000024565, Sall3, spalt like transcription factor 3, [Score=79.0, Expect=2e-16]; ENSMUSG00000031665, Sall1, spalt like transcription factor 1, [Score=77.8, Expect=6e-16]} {Dmel: FBgn0261648, salm, spalt major, [Score=80.5, Expect=4e-17]} {Celegans: WBGene00004773, sem-4, SEM-4 long form, [Score=81.3, Expect=2e-17]} {Smed: dd_Smed_v6_14176_0_1, dd_Smed_v6_14176_0_1, [Score=94.7, Expect=3e-22]} {RNA1509_34185} {RNA1310_7579} {RNA815_11290}
5. MligTC455_50326 349 7.27 Mlig455_000563, Mlig455_030362

Neo: -

Age: Down-Up-Down

Region-enriched R2: 4.949/0.00096

 ARID3A 0.961 - - 0.961 - - -

Mlig455_000563 {REF} {Length: 2916} {Pfam: ARID/BRIGHT DNA binding domain [PF01388.23, score=72.3]} {Human: ENSG00000116017, ARID3A, AT-rich interaction domain 3A, [RH, Score=244, Expect=4e-74]; ENSG00000205143, ARID3C, AT-rich interaction domain 3C, [RH, Score=244, Expect=5e-73]; ENSG00000179361, ARID3B, AT-rich interaction domain 3B, [RH, Score=236, Expect=3e-68]} {Mouse: ENSMUSG00000019564, Arid3a, AT rich interactive domain 3A (BRIGHT-like), [RH, Score=247, Expect=3e-72]; ENSMUSG00000066224, Arid3c, AT rich interactive domain 3C (BRIGHT-like), [RH, Score=247, Expect=2e-74]; ENSMUSG00000004661, Arid3b, AT rich interactive domain 3B (BRIGHT-like), [RH, Score=235, Expect=4e-68]} {Dmel: FBgn0004795, retn, retained, [RH, Score=244, Expect=7e-69]} {Celegans: WBGene00000476, cfi-1, AT-rich interactive domain-containing protein cfi-1, [RH, Score=229, Expect=6e-67]} {Smed: dd_Smed_v6_13474_0_1, dd_Smed_v6_13474_0_1, [RH, Score=257, Expect=3e-76]} {RNA1310_43081} {RNA815_22524}

Mlig455_030362 {REF} {Length: 2929} {Pfam: ARID/BRIGHT DNA binding domain [PF01388.23, score=72.3]} {Human: ENSG00000116017, ARID3A, AT-rich interaction domain 3A, [RH, Score=241, Expect=9e-73]; ENSG00000205143, ARID3C, AT-rich interaction domain 3C, [RH, Score=241, Expect=6e-72]; ENSG00000179361, ARID3B, AT-rich interaction domain 3B, [RH, Score=233, Expect=4e-67]} {Mouse: ENSMUSG00000066224, Arid3c, AT rich interactive domain 3C (BRIGHT-like), [RH, Score=244, Expect=1e-73]; ENSMUSG00000019564, Arid3a, AT rich interactive domain 3A (BRIGHT-like), [RH, Score=243, Expect=7e-71]; ENSMUSG00000004661, Arid3b, AT rich interactive domain 3B (BRIGHT-like), [RH, Score=232, Expect=6e-67]} {Dmel: FBgn0004795, retn, retained, [RH, Score=240, Expect=1e-67]} {Celegans: WBGene00000476, cfi-1, AT-rich interactive domain-containing protein cfi-1, [RH, Score=229, Expect=5e-67]} {Smed: dd_Smed_v6_13474_0_1, dd_Smed_v6_13474_0_1, [RH, Score=258, Expect=2e-76]} {RNA1310_43081} {RNA815_22524}
6. MligTC455_27074 54 1.13 Mlig455_012735

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_012735 {REF} {Length: 515} {NoTransDecoderORF} {RNA1509_59553} {RNA1310_127391} {RNA815_64986}
7. MligTC455_40917 136 2.84 Mlig455_054293, Mlig455_054369

Neo: -

Age: -

 0.95 - - 0.950 - - -

Mlig455_054293 {REF} {Length: 451} {NoTransDecoderORF} {RNA1310_68874} {RNA815_30304}

Mlig455_054369 {REF} {Length: 490} {NoTransDecoderORF} {RNA1310_68874} {RNA815_30304}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA