M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43504

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43504 2388 49.76 Mlig455_055223

Neo: -

Age: -

 Mlig455_055223 {REF} {Length: 911} {RNA1509_17222} {RNA1310_44913.1} {RNA815_37256}

Cumulative graph for MligTC455_43504

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.397 5.799 0.70139 1.00000
RegionR2 1.511 5.799 0.06023 0.29556
RegionR3 1.654 5.799 0.01559 0.20264
RegionR4 -1.416 5.799 0.11196 0.33136
RegionR5 -1.791 5.799 0.03104 0.13275
RegionR6 1.896 5.799 0.00569 0.11722
RegionR7 1.072 5.799 0.15132 0.72146
RegionR8 -2.529 5.799 0.02044 0.27885

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.661 5.799 0.59836 1.00000
RegenerationR2 -1.367 5.799 0.14498 0.57631
RegenerationR3 -1.103 5.799 0.23167 0.66629
RegenerationR4 -0.193 5.799 0.84346 1.00000
RegenerationR5 1.078 5.799 0.24089 0.67469
RegenerationR6 -1.743 5.799 0.06481 0.31979
RegenerationBL -1.182 5.799 0.19538 0.53129
RegenerationTP -0.185 5.799 0.86591 1.00000


Genes with expression patterns similar to MligTC455_43504

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43504 2388 49.76 Mlig455_055223

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_055223 {REF} {Length: 911} {RNA1509_17222} {RNA1310_44913.1} {RNA815_37256}
2. MligTC455_43505 695 14.47 Mlig455_055275

Neo: -

Age: logFC(26M/2M)=0.254

 5.764 0.978 0.954 0.923 0.977 0.986 0.946 Mlig455_055275 {REF} {Length: 1014} {Pfam: Winged helix-turn-helix [PF14947.8, score=19.3]} {RNA1509_17222} {RNA1310_44913.2} {RNA815_37256}
3. MligTC455_43507 1112 23.16 Mlig455_055318

Neo: -

Age: logFC(26M/2M)=0.860

Region-enriched R3: 2.019/0.02166

 5.458 0.954 0.886 0.841 0.984 0.964 0.829 Mlig455_055318 {REF} {Length: 948} {RNA1509_17222} {RNA1310_44913.2} {RNA815_37256}
4. MligTC455_10060 252 5.25 Mlig455_045586, Mlig455_045588, Mlig455_045645

Neo: -

Age: -

Region-enriched R3: 5.577/0.00014
Region-enriched R2: 5.093/0.02849

 3.409 - 0.787 0.822 0.955 0.845 -

Mlig455_045586 {REF} {Length: 436} {NoTransDecoderORF} {RNA1310_84637} {RNA815_42836.2}

Mlig455_045588 {REF} {Length: 472} {RNA1310_84637} {RNA815_42836.2}

Mlig455_045645 {REF} {Length: 489} {RNA1310_84637} {RNA815_42836.2}
5. MligTC455_41125 1467 30.56 Mlig455_023570, Mlig455_066989

Neo: -

Age: -

Region-enriched R6: 2.886/0.00252

 MUC22 2.684 - - 0.833 0.890 0.961 -

Mlig455_023570 {REF} {Length: 1213} {Human: ENSG00000261272, MUC22, mucin 22, [Score=62.8, Expect=6e-11]} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}

Mlig455_066989 {REF} {Length: 1093} {Human: ENSG00000261272, MUC22, mucin 22, [Score=55.8, Expect=5e-09]} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}
6. MligTC455_28055 19 0.41 Mlig455_048300, Mlig455_048327, Mlig455_048344

Neo: -

Age: -

 MARK2, MARK4 1.832 - - - 0.988 0.844 -

Mlig455_048300 {REF} {Length: 2504} {Pfam: Protein kinase domain [PF00069.27, score=157.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=86.8]; Kinase-like [PF14531.8, score=21.5]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=21.4]} {Human: ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [Score=158, Expect=1e-39]; ENSG00000072518, MARK2, microtubule affinity regulating kinase 2, [Score=157, Expect=2e-39]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [Score=152, Expect=7e-38]; ENSG00000160584, SIK3, SIK family kinase 3, [Score=152, Expect=2e-37]; ENSG00000074590, NUAK1, NUAK family kinase 1, [Score=151, Expect=1e-37]} {Mouse: ENSMUSG00000024969, Mark2, MAP/microtubule affinity regulating kinase 2, [Score=158, Expect=8e-40]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [Score=156, Expect=3e-39]; ENSMUSG00000007411, Mark3, MAP/microtubule affinity regulating kinase 3, [Score=152, Expect=8e-38]; ENSMUSG00000009772, Nuak2, NUAK family, SNF1-like kinase, 2, [Score=151, Expect=7e-38]; ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=151, Expect=4e-37]; ENSMUSG00000020032, Nuak1, NUAK family, SNF1-like kinase, 1, [Score=151, Expect=1e-37]} {Dmel: FBgn0026064, KP78a, [Score=156, Expect=2e-39]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=163, Expect=4e-41]} {Smed: dd_Smed_v6_14823_0_1, dd_Smed_v6_14823_0_1, [Score=317, Expect=1e-97]} {RNA1310_58898} {RNA815_35373}

Mlig455_048327 {REF} {Length: 2998} {Pfam: Protein kinase domain [PF00069.27, score=157.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=86.7]; Kinase-like [PF14531.8, score=21.4]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=21.3]} {Human: ENSG00000072518, MARK2, microtubule affinity regulating kinase 2, [Score=159, Expect=1e-39]; ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [Score=159, Expect=6e-40]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [Score=153, Expect=5e-38]; ENSG00000160584, SIK3, SIK family kinase 3, [Score=153, Expect=2e-37]; ENSG00000074590, NUAK1, NUAK family kinase 1, [Score=152, Expect=1e-37]} {Mouse: ENSMUSG00000024969, Mark2, MAP/microtubule affinity regulating kinase 2, [Score=159, Expect=7e-40]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [Score=157, Expect=2e-39]; ENSMUSG00000009772, Nuak2, NUAK family, SNF1-like kinase, 2, [Score=152, Expect=5e-38]; ENSMUSG00000007411, Mark3, MAP/microtubule affinity regulating kinase 3, [Score=152, Expect=5e-38]; ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=152, Expect=3e-37]} {Dmel: FBgn0026064, KP78a, [Score=157, Expect=9e-40]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=164, Expect=2e-41]} {Smed: dd_Smed_v6_14823_0_1, dd_Smed_v6_14823_0_1, [Score=318, Expect=1e-97]} {RNA1310_58898} {RNA815_35373}

Mlig455_048344 {REF} {Length: 2992} {Pfam: Protein kinase domain [PF00069.27, score=216.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=130.0]; Kinase-like [PF14531.8, score=22.0]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=21.6]} {Human: ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [Score=213, Expect=1e-58]; ENSG00000072518, MARK2, microtubule affinity regulating kinase 2, [Score=212, Expect=6e-58]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [Score=207, Expect=3e-56]; ENSG00000160584, SIK3, SIK family kinase 3, [Score=206, Expect=2e-54]} {Mouse: ENSMUSG00000024969, Mark2, MAP/microtubule affinity regulating kinase 2, [Score=212, Expect=3e-58]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [Score=212, Expect=5e-58]; ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=207, Expect=3e-55]; ENSMUSG00000007411, Mark3, MAP/microtubule affinity regulating kinase 3, [Score=206, Expect=4e-56]} {Dmel: FBgn0026064, KP78a, [Score=213, Expect=1e-58]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=217, Expect=7e-59]} {Smed: dd_Smed_v6_14823_0_1, dd_Smed_v6_14823_0_1, [RH, Score=465, Expect=5e-154]} {RNA1310_58898} {RNA815_35373}
7. MligTC455_52549 150 3.12 Mlig455_002138, Mlig455_002284

Neo: -

Age: -

Regeneration-depleted BL: -6.786
Regeneration-depleted TP: -4.939

 0.976 - - - 0.976 - -

Mlig455_002138 {REF} {Length: 4372} {Pfam: Innexin [PF00876.20, score=62.4]} {Smed: dd_Smed_v6_9861_0_1, dd_Smed_v6_9861_0_1, [Score=60.1, Expect=9e-10]} {RNA1509_36214} {RNA1310_17023} {RNA815_33132}

Mlig455_002284 {REF} {Length: 2783} {Pfam: Innexin [PF00876.20, score=63.0]} {Smed: dd_Smed_v6_9861_0_1, dd_Smed_v6_9861_0_1, [Score=61.2, Expect=4e-10]} {RNA1509_36214} {RNA1310_17023} {RNA815_33132}
8. MligTC455_13773 101 2.1 Mlig455_010827

Neo: -

Age: -

 0.972 - - - 0.972 - - Mlig455_010827 {REF} {Length: 304} {NoTransDecoderORF} {RNA1509_22845} {RNA1310_11632} {RNA815_10000}
9. MligTC455_35446 75 1.56 Mlig455_031433

Neo: -

Age: Down-Up-Up

 0.972 - - - - 0.972 - Mlig455_031433 {REF} {Length: 1430} {NoTransDecoderORF} {RNA1310_35373} {RNA815_22739}
10. MligTC455_42023 115 2.39 Mlig455_017828

Neo: -

Age: Up-Down-Down

 KCNS3 0.97 - - - 0.970 - - Mlig455_017828 {REF} {Length: 1820} {Pfam: Ion channel [PF07885.18, score=56.7]; Ion transport protein [PF00520.33, score=40.5]; Ligand-gated ion channel [PF00060.28, score=32.7]} {Human: ENSG00000170745, KCNS3, potassium voltage-gated channel modifier subfamily S member 3, [Score=58.9, Expect=1e-08]} {Mouse: ENSMUSG00000043673, Kcns3, potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3, [Score=58.2, Expect=1e-08]} {Dmel: FBgn0085395, Shawl, Shaw-like, [Score=49.7, Expect=6e-06]} {Celegans: WBGene00012967, kvs-4, [Score=55.1, Expect=8e-08]} {Smed: dd_Smed_v6_13710_0_1, dd_Smed_v6_13710_0_1, [Score=50.1, Expect=3e-06]} {RNA1310_24023} {RNA815_19497}
11. MligTC455_30826 98 2.04 Mlig455_047664

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_047664 {REF} {Length: 879} {NoTransDecoderORF} {RNA1310_39208} {RNA815_16462}
12. MligTC455_07578 52 1.09 Mlig455_063097

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_063097 {REF} {Length: 685} {NoTransDecoderORF} {RNA1310_96762}
13. MligTC455_13890 51 1.06 Mlig455_016963

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_016963 {REF} {Length: 894} {NoTransDecoderORF} {RNA1509_36146} {RNA1310_75460} {RNA815_9284}
14. MligTC455_23949 72 1.5 Mlig455_015145, Mlig455_015269

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_015145 {REF} {Length: 1093} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=57.2]} {RNA1310_34740} {RNA815_15663}

Mlig455_015269 {REF} {Length: 2195} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=58.4]} {RNA1310_34740} {RNA815_15663}
15. MligTC455_45801 473 9.86 Mlig455_060953

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.971/0.00047

 TENM1 0.957 - - - 0.957 - - Mlig455_060953 {REF} {Length: 10667} {Pfam: EGF-like domain [PF07974.15, score=60.5]} {Human: ENSG00000009694, TENM1, teneurin transmembrane protein 1, [RH, Score=739, Expect=0.0]} {Mouse: ENSMUSG00000016150, Tenm1, teneurin transmembrane protein 1, [RH, Score=750, Expect=0.0]} {Dmel: FBgn0004449, Ten-m, Tenascin major, [Score=710, Expect=0.0]} {Celegans: WBGene00006498, ten-1, Teneurin-1, [RH, Score=459, Expect=6e-130]} {Smed: dd_Smed_v6_5439_0_3, dd_Smed_v6_5439_0_3, [Score=593, Expect=5e-175]} {RNA1509_19240} {RNA1310_136, RNA1509_19240} {RNA1509_19240, RNA815_6451}
16. MligTC455_15762 2188 45.57 Mlig455_000167, Mlig455_000180

Neo: -

Age: logFC(26M/2M)=-0.431

Region-enriched R2: 2.556/0.00158
Region-enriched R7: 1.552/0.03255

 0.956 - - - 0.956 - -

Mlig455_000167 {REF} {Length: 680} {RNA1509_11317} {RNA1310_80444} {RNA815_41569}

Mlig455_000180 {REF} {Length: 678} {RNA1509_11317} {RNA1310_80444, RNA1509_11317} {RNA1509_11317, RNA815_41569}
17. MligTC455_40477 87 1.8 Mlig455_066098, Mlig455_068673

Neo: -

Age: -

Regeneration-downregulated R4: -4.243

Regeneration-depleted R4: -4.243

 SSUH2 0.955 - - - 0.955 - -

Mlig455_066098 {REF} {Length: 1581} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=108, Expect=1e-26]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=104, Expect=3e-25]} {Celegans: WBGene00013455, ssu-2, Suppressor of Stomatin mutant Uncoordination, [Score=69.3, Expect=4e-13]} {RNA1310_23200} {RNA815_29266}

Mlig455_068673 {REF} {Length: 1558} {Pfam: DnaJ central domain [PF00684.21, score=24.8]} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [RH, Score=216, Expect=8e-66]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=165, Expect=6e-47]} {Celegans: WBGene00013455, ssu-2, Suppressor of Stomatin mutant Uncoordination, [RH, Score=140, Expect=2e-37]} {RNA1310_23200} {RNA815_29266}
18. MligTC455_33239 57 1.18 Mlig455_006962

Neo: -

Age: -

 CACNG5 0.953 - - - 0.953 - - Mlig455_006962 {REF} {Length: 1957} {Pfam: PMP-22/EMP/MP20/Claudin tight junction [PF13903.8, score=72.5]; PMP-22/EMP/MP20/Claudin family [PF00822.22, score=60.2]} {Human: ENSG00000075429, CACNG5, calcium voltage-gated channel auxiliary subunit gamma 5, [Score=91.3, Expect=5e-20]; ENSG00000105605, CACNG7, calcium voltage-gated channel auxiliary subunit gamma 7, [Score=89.0, Expect=4e-19]} {Mouse: ENSMUSG00000040373, Cacng5, calcium channel, voltage-dependent, gamma subunit 5, [Score=90.1, Expect=9e-20]; ENSMUSG00000069806, Cacng7, calcium channel, voltage-dependent, gamma subunit 7, [Score=89.0, Expect=3e-19]; ENSMUSG00000096998, Cacng7, calcium channel, voltage-dependent, gamma subunit 7, [Score=89.0, Expect=3e-19]} {Dmel: FBgn0064123, stg1, stargazin-like protein, [Score=62.0, Expect=6e-10]} {Smed: dd_Smed_v6_20066_0_1, dd_Smed_v6_20066_0_1, [RH, Score=228, Expect=2e-68]} {RNA1310_39723} {RNA815_37605}
19. MligTC455_17235 216 4.51 Mlig455_058265

Neo: -

Age: -

 ANO7 0.952 - - - 0.952 - - Mlig455_058265 {REF} {Length: 1888} {Pfam: Calcium-activated chloride channel [PF04547.14, score=264.3]} {Human: ENSG00000146205, ANO7, anoctamin 7, [Score=394, Expect=4e-129]} {Mouse: ENSMUSG00000034107, Ano7, anoctamin 7, [Score=392, Expect=9e-130]} {Dmel: FBgn0038721, subdued, [Score=268, Expect=5e-82]} {Celegans: WBGene00013326, anoh-2, Anoctamin, [Score=85.1, Expect=9e-18]} {Smed: dd_Smed_v6_19189_0_1, dd_Smed_v6_19189_0_1, [Score=476, Expect=2e-164]} {RNA1509_15570} {RNA1310_7822} {RNA815_20477}
20. MligTC455_43950 2296 47.84 Mlig455_029261, Mlig455_035647, Mlig455_035748

Neo: -

Age: -

Regeneration-downregulated BL: -2.094

Regeneration-depleted BL: -2.094

 0.951 - - - 0.951 - -

Mlig455_029261 {REF} {Length: 2798} {RNA1509_28538, RNA1509_39513, RNA1509_9241} {RNA1310_10383, RNA1509_28538, RNA1509_39513, RNA1509_9241} {RNA1509_28538, RNA1509_39513, RNA1509_9241, RNA815_3519}

Mlig455_035647 {REF} {Length: 2505} {RNA1509_9241} {RNA1310_10383} {RNA815_3519}

Mlig455_035748 {REF} {Length: 2496} {RNA1509_9241} {RNA1310_10383} {RNA815_3519}
21. MligTC455_35561 23 0.47 Mlig455_058398

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_058398 {REF} {Length: 576} {NoTransDecoderORF}
22. MligTC455_49939 28 0.58 Mlig455_010579

Neo: -

Age: -

 GALNT1 0.95 - - - - 0.950 - Mlig455_010579 {REF} {Length: 2403} {Pfam: Glycosyl transferase family 2 [PF00535.28, score=94.3]} {Human: ENSG00000141429, GALNT1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=246, Expect=3e-75]; ENSG00000136542, GALNT5, polypeptide N-acetylgalactosaminyltransferase 5, [Score=245, Expect=8e-72]; ENSG00000144278, GALNT13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=243, Expect=7e-74]; ENSG00000164574, GALNT10, polypeptide N-acetylgalactosaminyltransferase 10, [Score=241, Expect=8e-73]; ENSG00000178234, GALNT11, polypeptide N-acetylgalactosaminyltransferase 11, [Score=238, Expect=2e-71]; ENSG00000115339, GALNT3, polypeptide N-acetylgalactosaminyltransferase 3, [Score=237, Expect=7e-71]} {Mouse: ENSMUSG00000026828, Galnt5, polypeptide N-acetylgalactosaminyltransferase 5, [Score=253, Expect=5e-75]; ENSMUSG00000026994, Galnt3, polypeptide N-acetylgalactosaminyltransferase 3, [Score=250, Expect=5e-76]; ENSMUSG00000000420, Galnt1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=248, Expect=6e-76]; ENSMUSG00000060988, Galnt13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=242, Expect=7e-74]; ENSMUSG00000020520, Galnt10, polypeptide N-acetylgalactosaminyltransferase 10, [Score=241, Expect=7e-73]} {Dmel: FBgn0050463, CG30463, [Score=292, Expect=3e-92]} {Celegans: WBGene00001630, gly-5, Polypeptide N-acetylgalactosaminyltransferase 5, [Score=303, Expect=9e-97]} {Smed: dd_Smed_v6_4615_0_1, dd_Smed_v6_4615_0_1, [Score=339, Expect=7e-111]} {RNA1310_80255}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA