M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43632

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43632 826 17.20 Mlig455_049505

Neo: -

Age: Up-Down-Down

 Mlig455_049505 {REF} {Length: 2510} {RNA1509_37292} {RNA1310_20906} {RNA815_16506}

Cumulative graph for MligTC455_43632

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.708 4.471 0.55476 1.00000
RegionR2 0.899 4.471 0.03118 0.20022
RegionR3 -0.107 4.471 0.76173 1.00000
RegionR4 0.482 4.471 0.22948 0.52214
RegionR5 -0.252 4.471 0.43922 0.79990
RegionR6 -0.583 4.471 0.12991 0.65052
RegionR7 -0.044 4.471 0.93038 1.00000
RegionR8 0.314 4.471 0.60148 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.765 4.471 0.13587 0.87134
RegenerationR2 0.015 4.471 0.95955 1.00000
RegenerationR3 0.563 4.471 0.12362 0.54377
RegenerationR4 -0.419 4.471 0.25676 0.70468
RegenerationR5 0.346 4.471 0.30623 0.73329
RegenerationR6 0.543 4.471 0.16114 0.48989
RegenerationBL 0.945 4.471 0.02765 0.18414
RegenerationTP -0.476 4.471 0.37752 0.81318


Genes with expression patterns similar to MligTC455_43632

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43631 826 17.2 Mlig455_015779

Neo: -

Age: -

 OFD1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_015779 {REF} {Length: 3577} {TRANSSPLICED} {Pfam: LisH [PF16045.7, score=42.8]} {Human: ENSG00000046651, OFD1, OFD1, centriole and centriolar satellite protein, [RH, Score=157, Expect=2e-38]} {Mouse: ENSMUSG00000040586, Ofd1, OFD1, centriole and centriolar satellite protein, [RH, Score=159, Expect=4e-39]} {Smed: dd_Smed_v6_13339_0_1, dd_Smed_v6_13339_0_1, [RH, Score=197, Expect=6e-52]} {RNA1509_24490, RNA1509_3300, RNA1509_58865} {RNA1310_1944.1, RNA1509_24490, RNA1509_3300, RNA1509_58865} {RNA1509_24490, RNA1509_3300, RNA1509_58865, RNA815_5819}
2. MligTC455_43632 826 17.2 Mlig455_049505

Neo: -

Age: Up-Down-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_049505 {REF} {Length: 2510} {RNA1509_37292} {RNA1310_20906} {RNA815_16506}
3. MligTC455_17507 2020 42.08 Mlig455_015134, Mlig455_015255

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.420

 2.411 0.721 - 0.735 - 0.955 -

Mlig455_015134 {REF} {Length: 2921} {RNA1509_39942, RNA1509_4515, RNA1509_53510} {RNA1310_2043, RNA1509_39942, RNA1509_4515, RNA1509_53510} {RNA1509_39942, RNA1509_4515, RNA1509_53510, RNA815_2140.1}

Mlig455_015255 {REF} {Length: 2728} {RNA1509_4515} {RNA1310_2043} {RNA815_2140.1}
4. MligTC455_16694 453 9.43 Mlig455_010449

Neo: -

Age: -

 1.734 - - 0.951 0.783 - - Mlig455_010449 {REF} {Length: 1659} {NoTransDecoderORF} {RNA1509_23830, RNA1509_28147, RNA1509_44085, RNA1509_51390} {RNA1310_58609, RNA1509_28147, RNA1509_44085, RNA1509_51390} {RNA1509_28147, RNA1509_44085, RNA1509_51390, RNA815_38049}
5. MligTC455_19201 3607 75.15 Mlig455_014189, Mlig455_014210

Neo: -

Age: -

 OGDH 1.725 - - - 0.772 0.953 -

Mlig455_014189 {REF} {Length: 3990} {TRANSSPLICED} {Pfam: Transketolase, pyrimidine binding domain [PF02779.26, score=215.3]; Dehydrogenase E1 component [PF00676.22, score=185.3]; 2-oxoglutarate dehydrogenase C-terminal [PF16870.7, score=171.4]; 2-oxoglutarate dehydrogenase N-terminus [PF16078.7, score=58.7]} {Human: ENSG00000105953, OGDH, oxoglutarate dehydrogenase, [RH, Score=1196, Expect=0.0]; ENSG00000197444, OGDHL, oxoglutarate dehydrogenase like, [RH, Score=1185, Expect=0.0]} {Mouse: ENSMUSG00000020456, Ogdh, oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide), [RH, Score=1190, Expect=0.0]; ENSMUSG00000021913, Ogdhl, oxoglutarate dehydrogenase-like, [RH, Score=1188, Expect=0.0]} {Dmel: FBgn0010352, Nc73EF, Neural conserved at 73EF, [RH, Score=1199, Expect=0.0]} {Celegans: WBGene00020679, ogdh-1, 2-oxoglutarate dehydrogenase, mitochondrial, [RH, Score=1137, Expect=0.0]} {Smed: dd_Smed_v6_1869_0_1, dd_Smed_v6_1869_0_1, [RH, Score=1356, Expect=0.0]} {RNA1509_10790} {RNA1310_8462} {RNA815_658.1}

Mlig455_014210 {REF} {Length: 4131} {TRANSSPLICED} {Pfam: Dehydrogenase E1 component [PF00676.22, score=250.7]; Transketolase, pyrimidine binding domain [PF02779.26, score=215.2]; 2-oxoglutarate dehydrogenase C-terminal [PF16870.7, score=171.3]; 2-oxoglutarate dehydrogenase N-terminus [PF16078.7, score=58.5]} {Human: ENSG00000105953, OGDH, oxoglutarate dehydrogenase, [RH, Score=1252, Expect=0.0]; ENSG00000197444, OGDHL, oxoglutarate dehydrogenase like, [RH, Score=1236, Expect=0.0]} {Mouse: ENSMUSG00000021913, Ogdhl, oxoglutarate dehydrogenase-like, [RH, Score=1244, Expect=0.0]; ENSMUSG00000020456, Ogdh, oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide), [RH, Score=1243, Expect=0.0]} {Dmel: FBgn0010352, Nc73EF, Neural conserved at 73EF, [RH, Score=1249, Expect=0.0]} {Celegans: WBGene00020679, ogdh-1, 2-oxoglutarate dehydrogenase, mitochondrial, [RH, Score=1189, Expect=0.0]} {Smed: dd_Smed_v6_1869_0_1, dd_Smed_v6_1869_0_1, [RH, Score=1404, Expect=0.0]} {RNA1509_775} {RNA1310_8462} {RNA815_658.1}
6. MligTC455_44720 362 7.53 Mlig455_025476

Neo: -

Age: -

 FBXO36 0.978 - - - - - 0.978 Mlig455_025476 {REF} {Length: 2031} {Pfam: F-box domain [PF00646.35, score=31.0]; F-box-like [PF12937.9, score=28.4]} {Human: ENSG00000153832, FBXO36, F-box protein 36, [RH, Score=103, Expect=2e-26]} {Mouse: ENSMUSG00000073633, Fbxo36, F-box protein 36, [RH, Score=101, Expect=6e-26]} {Smed: dd_Smed_v6_5335_0_1, dd_Smed_v6_5335_0_1, [RH, Score=105, Expect=1e-26]} {RNA1509_10158} {RNA1310_32781.1} {RNA815_8314}
7. MligTC455_07087 753 15.69 Mlig455_033003, Mlig455_044987, Mlig455_044989, Mlig455_052687

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.952

 0.958 - - - - 0.958 -

Mlig455_033003 {REF} {Length: 253} {NoTransDecoderORF} {RNA1509_51459} {RNA1310_59944} {RNA815_10907}

Mlig455_044987 {REF} {Length: 249} {NoTransDecoderORF} {RNA1509_51459} {RNA1310_59944, RNA1509_51459} {RNA1509_51459, RNA815_10907}

Mlig455_044989 {REF} {Length: 239} {NoTransDecoderORF} {RNA1509_51459} {RNA1310_59944} {RNA815_10907}

Mlig455_052687 {REF} {Length: 243} {NoTransDecoderORF} {RNA1509_51459} {RNA1310_59944} {RNA815_10907}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA