M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43669

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43669 4737 98.69 Mlig455_042144

Neo: -

Age: Down-Up-Down

 ATP1B1 Mlig455_042144 {REF} {Length: 1667} {TRANSSPLICED} {Pfam: Sodium / potassium ATPase beta chain [PF00287.20, score=215.3]} {Human: ENSG00000143153, ATP1B1, ATPase Na+/K+ transporting subunit beta 1, [Score=112, Expect=2e-28]} {Mouse: ENSMUSG00000026576, Atp1b1, ATPase, Na+/K+ transporting, beta 1 polypeptide, [Score=114, Expect=2e-29]} {Dmel: FBgn0015777, nrv2, nervana 2, [RH, Score=162, Expect=1e-47]} {Celegans: WBGene00010117, nkb-3, Probable sodium/potassium-transporting ATPase subunit beta-3, [Score=153, Expect=2e-44]} {Smed: dd_Smed_v6_2210_0_1, dd_Smed_v6_2210_0_1, [RH, Score=177, Expect=6e-54]} {RNA1509_33850, RNA1509_51210, RNA1509_58361} {RNA1310_399.1, RNA1509_33850, RNA1509_58361} {RNA1509_33850, RNA1509_58361, RNA815_7803}

Cumulative graph for MligTC455_43669

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.61 6.724 0.00151 0.12872
RegionR2 0.132 6.724 0.53480 0.90510
RegionR3 0.289 6.724 0.10713 0.57091
RegionR4 0.63 6.724 0.00221 0.01933
RegionR5 0.109 6.724 0.53290 0.89586
RegionR6 0.221 6.724 0.23132 0.81590
RegionR7 -0.119 6.724 0.60295 1.00000
RegionR8 0.348 6.724 0.16673 0.73899

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.364 6.724 0.66104 1.00000
RegenerationR2 0.105 6.724 0.58637 0.90916
RegenerationR3 -0.024 6.724 0.90598 1.00000
RegenerationR4 -0.062 6.724 0.76563 0.97516
RegenerationR5 0.235 6.724 0.23553 0.66929
RegenerationR6 0.29 6.724 0.16376 0.49328
RegenerationBL 0.626 6.724 0.00213 0.03760
RegenerationTP 0.131 6.724 0.57903 0.94913


Genes with expression patterns similar to MligTC455_43669

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43669 4737 98.69 Mlig455_042144

Neo: -

Age: Down-Up-Down

 ATP1B1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_042144 {REF} {Length: 1667} {TRANSSPLICED} {Pfam: Sodium / potassium ATPase beta chain [PF00287.20, score=215.3]} {Human: ENSG00000143153, ATP1B1, ATPase Na+/K+ transporting subunit beta 1, [Score=112, Expect=2e-28]} {Mouse: ENSMUSG00000026576, Atp1b1, ATPase, Na+/K+ transporting, beta 1 polypeptide, [Score=114, Expect=2e-29]} {Dmel: FBgn0015777, nrv2, nervana 2, [RH, Score=162, Expect=1e-47]} {Celegans: WBGene00010117, nkb-3, Probable sodium/potassium-transporting ATPase subunit beta-3, [Score=153, Expect=2e-44]} {Smed: dd_Smed_v6_2210_0_1, dd_Smed_v6_2210_0_1, [RH, Score=177, Expect=6e-54]} {RNA1509_33850, RNA1509_51210, RNA1509_58361} {RNA1310_399.1, RNA1509_33850, RNA1509_58361} {RNA1509_33850, RNA1509_58361, RNA815_7803}
2. MligTC455_51520 3550 73.96 Mlig455_029218, Mlig455_035626

Neo: -

Age: -

 CREBBP 1.738 - - - 0.976 0.762 -

Mlig455_029218 {REF} {Length: 7171} {TRANSSPLICED} {Pfam: Histone acetylation protein [PF08214.13, score=213.3]; KIX domain [PF02172.18, score=106.6]; TAZ zinc finger [PF02135.18, score=78.0]; Bromodomain [PF00439.27, score=64.3]; Domain of Unknown Function (DUF902) [PF06001.15, score=55.5]; Zinc finger, ZZ type [PF00569.19, score=42.1]; KIX domain [PF16987.7, score=24.8]} {Human: ENSG00000005339, CREBBP, CREB binding protein, [RH, Score=897, Expect=0.0]; ENSG00000100393, EP300, E1A binding protein p300, [RH, Score=881, Expect=0.0]} {Mouse: ENSMUSG00000022521, Crebbp, CREB binding protein, [RH, Score=897, Expect=0.0]; ENSMUSG00000055024, Ep300, E1A binding protein p300, [RH, Score=875, Expect=0.0]} {Dmel: FBgn0261617, nej, nejire, [RH, Score=893, Expect=0.0]} {Celegans: WBGene00000366, cbp-1, [RH, Score=854, Expect=0.0]} {Smed: dd_Smed_v6_7719_0_1, dd_Smed_v6_7719_0_1, [RH, Score=932, Expect=0.0]} {RNA1509_1063, RNA1509_14634, RNA1509_35924, RNA1509_9308} {RNA1310_739.1, RNA1509_14634, RNA1509_35924, RNA1509_9308} {RNA1509_14634, RNA1509_35924, RNA1509_9308, RNA815_341}

Mlig455_035626 {REF} {Length: 7054} {TRANSSPLICED} {Pfam: Histone acetylation protein [PF08214.13, score=215.0]; KIX domain [PF02172.18, score=105.1]; TAZ zinc finger [PF02135.18, score=79.1]; Bromodomain [PF00439.27, score=64.8]; Domain of Unknown Function (DUF902) [PF06001.15, score=55.8]; Zinc finger, ZZ type [PF00569.19, score=42.4]; KIX domain [PF16987.7, score=24.8]} {Human: ENSG00000005339, CREBBP, CREB binding protein, [RH, Score=877, Expect=0.0]; ENSG00000100393, EP300, E1A binding protein p300, [RH, Score=866, Expect=0.0]} {Mouse: ENSMUSG00000022521, Crebbp, CREB binding protein, [RH, Score=876, Expect=0.0]; ENSMUSG00000055024, Ep300, E1A binding protein p300, [RH, Score=858, Expect=0.0]} {Dmel: FBgn0261617, nej, nejire, [RH, Score=881, Expect=0.0]} {Celegans: WBGene00000366, cbp-1, [RH, Score=845, Expect=0.0]} {Smed: dd_Smed_v6_7719_0_1, dd_Smed_v6_7719_0_1, [RH, Score=924, Expect=0.0]} {RNA1509_1063} {RNA1310_739.1, RNA1509_1063} {RNA1509_1063, RNA815_341}
3. MligTC455_35196 1291 26.9 Mlig455_049177

Neo: -

Age: Down-Up-Up

 METTL27 0.964 - - - 0.964 - - Mlig455_049177 {REF} {Length: 1703} {Pfam: Methyltransferase domain [PF13649.8, score=28.8]; Methyltransferase domain [PF13489.8, score=20.4]; Methyltransferase domain [PF08241.14, score=19.6]; ubiE/COQ5 methyltransferase family [PF01209.20, score=18.9]} {Human: ENSG00000165171, METTL27, methyltransferase like 27, [Score=65.1, Expect=3e-13]} {Mouse: ENSMUSG00000040557, Mettl27, methyltransferase like 27, [Score=54.3, Expect=5e-10]} {Smed: dd_Smed_v6_5408_0_1, dd_Smed_v6_5408_0_1, [Score=77.4, Expect=2e-18]} {RNA1509_53518} {RNA1310_14261} {RNA815_8503}
4. MligTC455_45001 5543 115.48 Mlig455_010121, Mlig455_010157

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_010121 {REF} {Length: 1276} {TRANSSPLICED} {RNA1509_16158, RNA1509_16691, RNA1509_3284} {RNA1310_12112, RNA1509_16158, RNA1509_16691, RNA1509_3284} {RNA1509_16158, RNA1509_16691, RNA1509_3284, RNA815_12301.1}

Mlig455_010157 {REF} {Length: 1346} {TRANSSPLICED} {RNA1509_3284} {RNA1310_12112} {RNA815_12301.1}
5. MligTC455_53280 1632 34 Mlig455_066972

Neo: -

Age: -

 PDHA2 0.961 - - - - 0.961 - Mlig455_066972 {REF} {Length: 3344} {TRANSSPLICED} {Pfam: Dehydrogenase E1 component [PF00676.22, score=402.1]; 1-deoxy-D-xylulose-5-phosphate synthase [PF13292.8, score=25.6]; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain [PF02775.23, score=19.4]} {Human: ENSG00000163114, PDHA2, pyruvate dehydrogenase E1 alpha 2 subunit, [RH, Score=455, Expect=7e-160]; ENSG00000131828, PDHA1, pyruvate dehydrogenase E1 alpha 1 subunit, [RH, Score=449, Expect=3e-157]} {Mouse: ENSMUSG00000031299, Pdha1, pyruvate dehydrogenase E1 alpha 1, [RH, Score=479, Expect=3e-169]} {Dmel: FBgn0028325, l(1)G0334, lethal (1) G0334, [RH, Score=456, Expect=3e-160]} {Celegans: WBGene00011510, pdha-1, Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial, [RH, Score=506, Expect=4e-180]} {Smed: dd_Smed_v6_1310_0_1, dd_Smed_v6_1310_0_1, [RH, Score=468, Expect=1e-165]} {RNA1509_14154, RNA1509_15765, RNA1509_16921, RNA1509_39832, RNA1509_4824, RNA1509_55395} {RNA1310_20196.1, RNA1509_14154, RNA1509_15765, RNA1509_16921, RNA1509_39832, RNA1509_4824, RNA1509_55395} {RNA1509_14154, RNA1509_15765, RNA1509_16921, RNA1509_39832, RNA1509_4824, RNA1509_55395, RNA815_9327}
6. MligTC455_52212 1606 33.46 Mlig455_014430

Neo: -

Age: -

Regeneration-upregulated BL: 1.347

Regeneration-enriched BL: 1.347

 MARK2 0.951 - - - 0.951 - - Mlig455_014430 {REF} {Length: 5942} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=253.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=155.0]; Kinase associated domain 1 [PF02149.21, score=67.5]; Kinase-like [PF14531.8, score=29.6]; ABC1 atypical kinase-like domain [PF03109.18, score=27.7]; RIO1 family [PF01163.24, score=19.2]} {Human: ENSG00000072518, MARK2, microtubule affinity regulating kinase 2, [RH, Score=574, Expect=0.0]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [RH, Score=571, Expect=0.0]; ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [RH, Score=559, Expect=0.0]; ENSG00000116141, MARK1, microtubule affinity regulating kinase 1, [RH, Score=551, Expect=0.0]} {Mouse: ENSMUSG00000024969, Mark2, MAP/microtubule affinity regulating kinase 2, [RH, Score=573, Expect=0.0]; ENSMUSG00000007411, Mark3, MAP/microtubule affinity regulating kinase 3, [RH, Score=569, Expect=0.0]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [RH, Score=554, Expect=0.0]; ENSMUSG00000026620, Mark1, MAP/microtubule affinity regulating kinase 1, [RH, Score=551, Expect=0.0]} {Dmel: FBgn0260934, par-1, [RH, Score=566, Expect=0.0]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [RH, Score=555, Expect=7e-180]} {Smed: dd_Smed_v6_3685_0_1, dd_Smed_v6_3685_0_1, [RH, Score=585, Expect=0.0]} {RNA1509_2419} {RNA1310_1494} {RNA815_6824}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA