M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43791

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43791 1365 28.43 Mlig455_044501

Neo: -

Age: logFC(26M/2M)=-0.753

Region-enriched R2: 1.262/0.02262

 CAPSL Mlig455_044501 {REF} {Length: 1977} {TRANSSPLICED} {Pfam: EF-hand domain [PF13405.8, score=66.4]; EF-hand domain pair [PF13499.8, score=64.1]; EF hand [PF00036.34, score=59.3]; EF hand [PF13202.8, score=45.3]; EF-hand domain pair [PF13833.8, score=40.6]} {Human: ENSG00000152611, CAPSL, calcyphosine like, [RH, Score=271, Expect=8e-93]} {Mouse: ENSMUSG00000039676, Capsl, calcyphosine-like, [RH, Score=280, Expect=2e-96]} {Dmel: FBgn0051345, CG31345, [RH, Score=244, Expect=1e-82]} {Celegans: WBGene00019770, M04F3.4, [Score=50.4, Expect=6e-08]} {Smed: dd_Smed_v6_4512_0_1, dd_Smed_v6_4512_0_1, [RH, Score=290, Expect=1e-100]} {RNA1509_16154, RNA1509_16210, RNA1509_5158} {RNA1310_25986.1, RNA1509_16154, RNA1509_16210, RNA1509_5158} {RNA1509_16154, RNA1509_16210, RNA1509_5158, RNA815_11323}

Cumulative graph for MligTC455_43791

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.98 5.046 0.04407 0.50610
RegionR2 1.262 5.046 0.00105 0.02262
RegionR3 0.702 5.046 0.02311 0.25844
RegionR4 0.234 5.046 0.53973 0.86224
RegionR5 -0.392 5.046 0.22680 0.53175
RegionR6 0.373 5.046 0.25107 0.83740
RegionR7 -0.155 5.046 0.69451 1.00000
RegionR8 -0.045 5.046 0.91653 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.028 5.046 0.49571 1.00000
RegenerationR2 -0.091 5.046 0.77970 0.98314
RegenerationR3 0.042 5.046 0.90829 1.00000
RegenerationR4 -0.11 5.046 0.77318 0.97777
RegenerationR5 0.21 5.046 0.57682 0.89888
RegenerationR6 -1.253 5.046 0.00267 0.05911
RegenerationBL -0.559 5.046 0.22691 0.57678
RegenerationTP -0.604 5.046 0.21183 0.65465


Genes with expression patterns similar to MligTC455_43791

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43791 1365 28.43 Mlig455_044501

Neo: -

Age: logFC(26M/2M)=-0.753

Region-enriched R2: 1.262/0.02262

 CAPSL 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_044501 {REF} {Length: 1977} {TRANSSPLICED} {Pfam: EF-hand domain [PF13405.8, score=66.4]; EF-hand domain pair [PF13499.8, score=64.1]; EF hand [PF00036.34, score=59.3]; EF hand [PF13202.8, score=45.3]; EF-hand domain pair [PF13833.8, score=40.6]} {Human: ENSG00000152611, CAPSL, calcyphosine like, [RH, Score=271, Expect=8e-93]} {Mouse: ENSMUSG00000039676, Capsl, calcyphosine-like, [RH, Score=280, Expect=2e-96]} {Dmel: FBgn0051345, CG31345, [RH, Score=244, Expect=1e-82]} {Celegans: WBGene00019770, M04F3.4, [Score=50.4, Expect=6e-08]} {Smed: dd_Smed_v6_4512_0_1, dd_Smed_v6_4512_0_1, [RH, Score=290, Expect=1e-100]} {RNA1509_16154, RNA1509_16210, RNA1509_5158} {RNA1310_25986.1, RNA1509_16154, RNA1509_16210, RNA1509_5158} {RNA1509_16154, RNA1509_16210, RNA1509_5158, RNA815_11323}
2. MligTC455_48617 1098 22.87 Mlig455_045679

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.603

Region-enriched R2: 1.287/0.04140
Region-enriched R4: 1.125/0.04806

 CCDC81 3.335 - 0.788 - 0.953 0.755 0.839 Mlig455_045679 {REF} {Length: 3799} {Human: ENSG00000149201, CCDC81, coiled-coil domain containing 81, [RH, Score=239, Expect=1e-70]} {Mouse: ENSMUSG00000039391, Ccdc81, coiled-coil domain containing 81, [Score=215, Expect=9e-61]} {Smed: dd_Smed_v6_6753_0_1, dd_Smed_v6_6753_0_1, [RH, Score=378, Expect=3e-122]} {RNA1509_2273} {RNA1310_2252} {RNA815_610}
3. MligTC455_43616 1798 37.45 Mlig455_024513

Neo: -

Age: logFC(26M/2M)=-0.338

Region-enriched R2: 1.066/0.02738

 CFAP57 2.669 - 0.915 0.793 - - 0.961 Mlig455_024513 {REF} {Length: 5805} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=65.8]; Crescentin protein [PF19220.2, score=26.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=25.5]; Autophagy protein 16 (ATG16) [PF08614.13, score=24.0]; Coiled-coil region of CCDC155 or KASH [PF14662.8, score=20.0]} {Human: ENSG00000243710, CFAP57, cilia and flagella associated protein 57, [RH, Score=1363, Expect=0.0]} {Mouse: ENSMUSG00000028730, Cfap57, cilia and flagella associated protein 57, [RH, Score=1360, Expect=0.0]} {Dmel: FBgn0034745, CG4329, [RH, Score=496, Expect=5e-155]} {Celegans: WBGene00003047, lis-1, Lissencephaly-1 homolog, [Score=55.1, Expect=2e-07]} {Smed: dd_Smed_v6_3323_0_1, dd_Smed_v6_3323_0_1, [RH, Score=1620, Expect=0.0]} {RNA1509_14259, RNA1509_18569, RNA1509_42897, RNA1509_836} {RNA1310_1737, RNA1509_14259, RNA1509_18569, RNA1509_42897} {RNA1509_14259, RNA1509_18569, RNA1509_42897, RNA815_558}
4. MligTC455_28768 34 0.72 Mlig455_052093

Neo: -

Age: -

 ANKRD50 2.505 - - 0.731 - 0.811 0.963 Mlig455_052093 {REF} {Length: 3574} {Pfam: Ets-domain [PF00178.24, score=53.3]; Ankyrin repeats (many copies) [PF13637.8, score=47.0]; Ankyrin repeats (3 copies) [PF12796.9, score=42.5]; Ankyrin repeats (many copies) [PF13857.8, score=41.6]; Mab-21 protein [PF03281.16, score=37.4]; Ankyrin repeat [PF13606.8, score=35.3]; Ankyrin repeat [PF00023.32, score=32.5]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=71.6, Expect=6e-12]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=68.6, Expect=5e-11]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=69.7, Expect=2e-11]; ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=68.2, Expect=6e-11]; ENSMUSG00000078487, Ankrd65, ankyrin repeat domain 65, [Score=66.6, Expect=5e-11]} {Dmel: FBgn0031473, CG3104, [Score=58.9, Expect=8e-09]} {Celegans: WBGene00185078, F40G9.17, [Score=52.0, Expect=5e-07]} {Smed: dd_Smed_v6_12936_0_1, dd_Smed_v6_12936_0_1, [Score=65.1, Expect=2e-10]} {RNA1509_26281} {RNA1310_4721} {RNA815_5358.1}
5. MligTC455_49410 4875 101.56 Mlig455_004482, Mlig455_037377

Neo: -

Age: -

 1.809 - - - - 0.845 0.964

Mlig455_004482 {REF} {Length: 1356} {Smed: dd_Smed_v6_11049_0_1, dd_Smed_v6_11049_0_1, [RH, Score=120, Expect=3e-32]} {RNA1509_7498} {RNA1310_22117} {RNA815_10789.1}

Mlig455_037377 {REF} {Length: 1487} {Smed: dd_Smed_v6_11049_0_1, dd_Smed_v6_11049_0_1, [Score=119, Expect=3e-32]} {RNA1509_32876, RNA1509_39685, RNA1509_7498} {RNA1310_22117, RNA1509_32876, RNA1509_39685} {RNA1509_32876, RNA1509_39685, RNA815_10789.1}
6. MligTC455_22730 314 6.54 Mlig455_055170

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.352

 DNAH8 1.795 - - - - 0.826 0.969 Mlig455_055170 {REF} {Length: 14554} {Pfam: Dynein heavy chain, N-terminal region 1 [PF08385.14, score=537.5]; Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=466.2]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=416.8]; Dynein heavy chain C-terminal domain [PF18199.3, score=324.9]; ATP-binding dynein motor region [PF12781.9, score=291.0]; P-loop containing dynein motor region D4 [PF12780.9, score=290.7]; P-loop containing dynein motor region [PF12775.9, score=226.5]; Dynein heavy chain AAA lid domain [PF18198.3, score=177.7]; Microtubule-binding stalk of dynein motor [PF12777.9, score=140.6]; Dynein heavy chain region D6 P-loop domain [PF03028.17, score=134.5]; AAA domain (dynein-related subfamily) [PF07728.16, score=81.4]; Dynein heavy chain AAA lid domain [PF17852.3, score=76.4]; AAA+ lid domain [PF17857.3, score=62.9]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=25.1]} {Human: ENSG00000124721, DNAH8, dynein axonemal heavy chain 8, [RH, Score=5668, Expect=0.0]} {Mouse: ENSMUSG00000033826, Dnah8, dynein, axonemal, heavy chain 8, [RH, Score=5678, Expect=0.0]} {Dmel: FBgn0267432, kl-3, male fertility factor kl3, [RH, Score=4459, Expect=0.0]} {Celegans: WBGene00000485, che-3, Cytoplasmic dynein 2 heavy chain 1, [Score=980, Expect=0.0]} {Smed: dd_Smed_v6_4176_0_1, dd_Smed_v6_4176_0_1, [RH, Score=6801, Expect=0.0]} {RNA1509_201} {RNA1310_42} {RNA815_121}
7. MligTC455_25410 47 0.97 Mlig455_026185

Neo: -

Age: Up-Down-Down

Region-enriched R2: 8.036/0.00469
Region-enriched R6: 6.422/0.01487

 1.758 - - - - 0.950 0.808 Mlig455_026185 {REF} {Length: 3002} {Pfam: Variant SH3 domain [PF07653.19, score=19.6]; Growth-arrest specific micro-tubule binding [PF13851.8, score=19.3]} {Mouse: ENSMUSG00000034156, Tspoap1, TSPO associated protein 1, [Score=54.7, Expect=6e-07]} {Smed: dd_Smed_v6_14584_0_1, dd_Smed_v6_14584_0_1, [Score=140, Expect=7e-35]} {RNA1509_45271} {RNA1310_5741} {RNA815_46868}
8. MligTC455_20155 9538 198.7 Mlig455_064873

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.840

 1.72 - 0.758 - - - 0.962 Mlig455_064873 {REF} {Length: 827} {NoTransDecoderORF} {RNA1509_1319, RNA1509_2057, RNA1509_4248, RNA1509_47281, RNA1509_54382, RNA1509_59941} {RNA1310_27417, RNA1509_1319, RNA1509_2057, RNA1509_4248, RNA1509_47281, RNA1509_54382, RNA1509_59941} {RNA1509_1319, RNA1509_2057, RNA1509_4248, RNA1509_47281, RNA1509_54382, RNA1509_59941, RNA815_21606}
9. MligTC455_45990 197 4.1 Mlig455_045088

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.569

 1.706 - - 0.748 - 0.958 - Mlig455_045088 {REF} {Length: 1378} {RNA1509_24520, RNA1509_51196} {RNA1310_67350, RNA1509_24520, RNA1509_51196} {RNA1509_24520, RNA1509_51196, RNA815_35145}
10. MligTC455_08366 4082 85.04 Mlig455_049130

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.310

 DYNLRB1 1.682 - - - - 0.950 0.732 Mlig455_049130 {REF} {Length: 964} {Pfam: Roadblock/LC7 domain [PF03259.19, score=79.3]; Ragulator complex protein LAMTOR5 [PF16672.7, score=22.4]} {Human: ENSG00000125971, DYNLRB1, dynein light chain roadblock-type 1, [RH, Score=137, Expect=2e-43]; ENSG00000168589, DYNLRB2, dynein light chain roadblock-type 2, [RH, Score=132, Expect=3e-41]} {Mouse: ENSMUSG00000047459, Dynlrb1, dynein light chain roadblock-type 1, [RH, Score=134, Expect=3e-42]; ENSMUSG00000034467, Dynlrb2, dynein light chain roadblock-type 2, [RH, Score=134, Expect=4e-42]} {Dmel: FBgn0024196, robl, roadblock, [Score=132, Expect=1e-41]} {Celegans: WBGene00012004, dyrb-1, Dynein light chain roadblock, [RH, Score=98.6, Expect=2e-28]} {Smed: dd_Smed_v6_5440_0_1, dd_Smed_v6_5440_0_1, [RH, Score=133, Expect=4e-42]} {RNA1509_19902, RNA1509_2355, RNA1509_6206} {RNA1310_34984, RNA1509_19902, RNA1509_2355, RNA1509_6206} {RNA1509_19902, RNA1509_2355, RNA1509_6206, RNA815_17288.1}
11. MligTC455_31212 97 2.02 Mlig455_028599, Mlig455_056911

Neo: -

Age: -

 1.653 - - 0.703 - 0.950 -

Mlig455_028599 {REF} {Length: 600} {NoTransDecoderORF} {RNA1310_114554} {RNA815_54362}

Mlig455_056911 {REF} {Length: 602} {NoTransDecoderORF} {RNA1310_114554} {RNA815_54362}
12. MligTC455_00072 10 0.2 Mlig455_001911

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_001911 {REF} {Length: 296} {NoTransDecoderORF} {RNA1310_118235}
13. MligTC455_12410 44 0.91 Mlig455_013864

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_013864 {REF} {Length: 332} {NoTransDecoderORF} {RNA1310_61041} {RNA815_1171.2}
14. MligTC455_30594 23 0.48 Mlig455_038529, Mlig455_052221

Neo: -

Age: -

 0.965 - - - - 0.965 -

Mlig455_038529 {REF} {Length: 805} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=35.1]} {RNA1509_40834} {RNA1310_11051} {RNA815_3523.1}

Mlig455_052221 {REF} {Length: 7356} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=40.2]; Mab-21 protein [PF03281.16, score=18.9]} {RNA1509_14346, RNA1509_40834} {RNA1310_11051, RNA1509_14346} {RNA1509_14346, RNA815_3523.1}
15. MligTC455_02461 5 0.11 Mlig455_019900

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_019900 {REF} {Length: 253} {NoTransDecoderORF} {RNA1509_34377} {RNA1310_100135}
16. MligTC455_22841 20 0.41 Mlig455_066350

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_066350 {REF} {Length: 694} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35987, RNA1509_46319} {RNA1310_35806, RNA1509_35987, RNA1509_46319} {RNA1509_35987, RNA1509_46319, RNA815_14596}
17. MligTC455_44444 123 2.57 Mlig455_062758

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_062758 {REF} {Length: 1304} {Pfam: Retinal tissue protein [PF10044.11, score=28.1]} {RNA1509_3524} {RNA1310_10649.1} {RNA815_4708.1}
18. MligTC455_43527 534 11.13 Mlig455_038716

Neo: -

Age: logFC(26M/2M)=-0.649

 0.961 - - - - - 0.961 Mlig455_038716 {REF} {Length: 762} {Pfam: Pancreatic hormone peptide [PF00159.20, score=37.4]} {RNA1509_52501} {RNA1310_43859, RNA1509_52501} {RNA1509_52501, RNA815_26881}
19. MligTC455_31082 93 1.93 Mlig455_020193

Neo: -

Age: Up-Down-Up

 0.959 - - - - 0.959 - Mlig455_020193 {REF} {Length: 1952} {RNA1509_54750} {RNA1310_22843} {RNA815_11564.1}
20. MligTC455_15053 12 0.26 Mlig455_016326

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_016326 {REF} {Length: 2006} {NoTransDecoderORF} {RNA1509_50409, RNA1509_54815} {RNA1310_146928, RNA1509_50409} {RNA1509_50409, RNA815_32053}
21. MligTC455_56840 7 0.15 Mlig455_012947

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_012947 {REF} {Length: 4} {NoTransDecoderORF}
22. MligTC455_23545 337 7.02 Mlig455_021926

Neo: -

Age: -

 MAP3K19 0.952 - - 0.952 - - - Mlig455_021926 {REF} {Length: 5795} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=189.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=145.7]; Ankyrin repeats (3 copies) [PF12796.9, score=111.3]; Ankyrin repeats (many copies) [PF13637.8, score=88.9]; Ankyrin repeats (many copies) [PF13857.8, score=82.7]; Ankyrin repeat [PF00023.32, score=61.1]; Ankyrin repeat [PF13606.8, score=59.7]; ABC1 atypical kinase-like domain [PF03109.18, score=31.6]; Fungal protein kinase [PF17667.3, score=17.8]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=165, Expect=3e-43]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=169, Expect=3e-43]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=145, Expect=4e-36]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=136, Expect=2e-33]} {Smed: dd_Smed_v6_10339_0_1, dd_Smed_v6_10339_0_1, [Score=154, Expect=1e-38]} {RNA1509_9426} {RNA1310_9191} {RNA815_12161}
23. MligTC455_53285 6 0.13 Mlig455_061305

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_061305 {REF} {Length: 422} {NoTransDecoderORF}
24. MligTC455_19695 59 1.23 Mlig455_067848

Neo: -

Age: logFC(26M/2M)=-0.595

 0.95 - - - - 0.950 - Mlig455_067848 {REF} {Length: 1979} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=32.9]} {Smed: dd_Smed_v6_12148_0_3, dd_Smed_v6_12148_0_3, [Score=76.3, Expect=8e-16]} {RNA1509_37281} {RNA1310_6533.1} {RNA815_6407}
25. MligTC455_29464 25 0.53 Mlig455_021892

Neo: -

Age: -

 SDCCAG8 0.95 - - - - 0.950 - Mlig455_021892 {REF} {Length: 3036} {Pfam: Centrosomal colon cancer autoantigen protein family [PF15964.7, score=164.7]} {Human: ENSG00000276111, SDCCAG8, serologically defined colon cancer antigen 8, [RH, Score=120, Expect=2e-27]; ENSG00000054282, SDCCAG8, serologically defined colon cancer antigen 8, [RH, Score=120, Expect=2e-27]} {Mouse: ENSMUSG00000026504, Sdccag8, serologically defined colon cancer antigen 8, [RH, Score=109, Expect=4e-24]} {Dmel: FBgn0266566, CG45105, [Score=52.4, Expect=2e-06]} {Smed: dd_Smed_v6_9295_0_2, dd_Smed_v6_9295_0_2, [RH, Score=87.8, Expect=7e-18]} {RNA1509_42574} {RNA1310_5942.1} {RNA815_9353.1}
26. MligTC455_43292 603 12.56 Mlig455_043465

Neo: -

Age: logFC(26M/2M)=0.315

 HID1 0.95 - - - 0.950 - - Mlig455_043465 {REF} {Length: 5057} {Pfam: High-temperature-induced dauer-formation protein [PF12722.9, score=924.3]; Dyggve-Melchior-Clausen syndrome protein [PF09742.11, score=753.7]; Protein of unknown function (DUF2722) [PF10846.10, score=19.9]} {Human: ENSG00000167861, HID1, HID1 domain containing, [RH, Score=1105, Expect=0.0]} {Mouse: ENSMUSG00000034586, Hid1, HID1 domain containing, [RH, Score=1106, Expect=0.0]} {Dmel: FBgn0033713, CG8841, [RH, Score=1028, Expect=0.0]} {Celegans: WBGene00001844, hid-1, HID-1; High temperature-Induced Dauer formation, [RH, Score=829, Expect=0.0]} {Smed: dd_Smed_v6_4543_0_1, dd_Smed_v6_4543_0_1, [RH, Score=1009, Expect=0.0]} {RNA1509_22998, RNA1509_52413} {RNA1310_2060, RNA1509_52413} {RNA1509_52413, RNA815_13082.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA