TomoSeq data search

Data search

Results for MligTC455_43872

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_43872

1327

27.64

Mlig455_051371

Neo: -

Age: -

RAB35

Mlig455_051371 {REF} {Length: 1911} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=192.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=117.9]; ADP-ribosylation factor family [PF00025.23, score=55.3]; 50S ribosome-binding GTPase [PF01926.25, score=26.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=23.2]; RsgA GTPase [PF03193.18, score=19.2]} {Human: ENSG00000111737, RAB35, RAB35, member RAS oncogene family, [RH, Score=241, Expect=4e-81]} {Mouse: ENSMUSG00000029518, Rab35, RAB35, member RAS oncogene family, [RH, Score=241, Expect=3e-81]} {Dmel: FBgn0031090, Rab35, [RH, Score=234, Expect=9e-79]} {Celegans: WBGene00004284, rab-35, RAB family, [RH, Score=237, Expect=8e-80]} {Smed: dd_Smed_v6_854_0_5, dd_Smed_v6_854_0_5, [Score=214, Expect=3e-71]} {RNA1509_8433} {RNA1310_16945} {RNA815_1212.1}

Cumulative graph for MligTC455_43872

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.156	5.011	0.85464	1.00000
RegionR2	-0.511	5.011	0.20490	0.56712
RegionR3	-0.375	5.011	0.26163	0.80543
RegionR4	0.592	5.011	0.13586	0.37480
RegionR5	0.617	5.011	0.03858	0.15542
RegionR6	0.098	5.011	0.76356	1.00000
RegionR7	-0.203	5.011	0.61131	1.00000
RegionR8	-0.374	5.011	0.46173	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.309	5.011	0.31145	1.00000
RegenerationR2	-0.481	5.011	0.19097	0.63487
RegenerationR3	-0.318	5.011	0.42186	0.81660
RegenerationR4	-0.518	5.011	0.19251	0.63696
RegenerationR5	-0.883	5.011	0.01643	0.22265
RegenerationR6	-0.389	5.011	0.32131	0.66793
RegenerationBL	0.313	5.011	0.44223	0.80932
RegenerationTP	0.094	5.011	0.83996	1.00000

Genes with expression patterns similar to MligTC455_43872

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_43872	1327	27.64	Mlig455_051371	Neo: - Age: -	RAB35	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_051371 {REF} {Length: 1911} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=192.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=117.9]; ADP-ribosylation factor family [PF00025.23, score=55.3]; 50S ribosome-binding GTPase [PF01926.25, score=26.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=23.2]; RsgA GTPase [PF03193.18, score=19.2]} {Human: ENSG00000111737, RAB35, RAB35, member RAS oncogene family, [RH, Score=241, Expect=4e-81]} {Mouse: ENSMUSG00000029518, Rab35, RAB35, member RAS oncogene family, [RH, Score=241, Expect=3e-81]} {Dmel: FBgn0031090, Rab35, [RH, Score=234, Expect=9e-79]} {Celegans: WBGene00004284, rab-35, RAB family, [RH, Score=237, Expect=8e-80]} {Smed: dd_Smed_v6_854_0_5, dd_Smed_v6_854_0_5, [Score=214, Expect=3e-71]} {RNA1509_8433} {RNA1310_16945} {RNA815_1212.1}
2.	MligTC455_43656	1749	36.45	Mlig455_023655	Neo: Int S/G2/M Age: - Region-enriched R4: 1.627/0.00000 Regeneration-downregulated R4: -1.011 Regeneration-depleted R4: -1.011		1.711	-	-	0.744	-	-	0.967	Mlig455_023655 {REF} {Length: 3402} {TRANSSPLICED} {RNA1509_16467, RNA1509_2321, RNA1509_24894, RNA1509_28873, RNA1509_8155} {RNA1310_13936.2, RNA1509_16467, RNA1509_2321, RNA1509_24894, RNA1509_28873, RNA1509_8155} {RNA1509_16467, RNA1509_2321, RNA1509_24894, RNA1509_28873, RNA1509_8155, RNA815_15122}
3.	MligTC455_46295	3907	81.39	Mlig455_061043	Neo: Int S/G2/M Age: -		0.964	-	-	-	0.964	-	-	Mlig455_061043 {REF} {Length: 1027} {TRANSSPLICED} {Pfam: Protein of Unknown function (DUF1690) [PF07956.13, score=19.6]} {Smed: dd_Smed_v6_4111_0_1, dd_Smed_v6_4111_0_1, [RH, Score=72.8, Expect=1e-16]} {RNA1509_19548, RNA1509_35470, RNA1509_3705, RNA1509_4323, RNA1509_50738} {RNA1310_33182.2, RNA1509_19548, RNA1509_35470, RNA1509_3705, RNA1509_4323, RNA1509_50738} {RNA1509_19548, RNA1509_35470, RNA1509_3705, RNA1509_4323, RNA1509_50738, RNA815_15670}
4.	MligTC455_49269	2612	54.41	Mlig455_024829, Mlig455_024914	Neo: Int S/G2/M Age: -	LSM14A	0.951	-	-	-	-	-	0.951	Mlig455_024829 {REF} {Length: 1868} {TRANSSPLICED} {Pfam: Scd6-like Sm domain [PF12701.9, score=102.3]; Ataxin 2 SM domain [PF14438.8, score=38.5]} {Human: ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=120, Expect=2e-30]; ENSG00000149657, LSM14B, LSM family member 14B, [Score=120, Expect=9e-31]; ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=120, Expect=1e-29]} {Mouse: ENSMUSG00000039108, Lsm14b, LSM family member 14B, [Score=119, Expect=9e-30]; ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [Score=118, Expect=4e-30]} {Dmel: FBgn0041775, tral, trailer hitch, [Score=92.4, Expect=6e-20]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [Score=108, Expect=2e-26]} {Smed: dd_Smed_v6_49142_0_1, dd_Smed_v6_49142_0_1, [Score=120, Expect=6e-32]} {RNA1509_14047, RNA1509_34309} {RNA1310_28694, RNA1509_14047} {RNA1509_14047, RNA815_19470.1} Mlig455_024914 {REF} {Length: 1877} {TRANSSPLICED} {Pfam: Scd6-like Sm domain [PF12701.9, score=101.8]; Ataxin 2 SM domain [PF14438.8, score=38.6]} {Human: ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=122, Expect=3e-30]; ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=122, Expect=2e-30]; ENSG00000149657, LSM14B, LSM family member 14B, [Score=122, Expect=2e-31]} {Mouse: ENSMUSG00000039108, Lsm14b, LSM family member 14B, [Score=121, Expect=2e-30]; ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [Score=120, Expect=1e-29]} {Dmel: FBgn0041775, tral, trailer hitch, [Score=91.3, Expect=1e-19]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [Score=109, Expect=9e-27]} {Smed: dd_Smed_v6_1594_0_1, dd_Smed_v6_1594_0_1, [Score=127, Expect=1e-32]} {RNA1509_34309} {RNA1310_28694, RNA1509_34309} {RNA1509_34309, RNA815_19470.1}

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