M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44210

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44210 1022 21.29 Mlig455_026521

Neo: -

Age: -

 SYT1 Mlig455_026521 {REF} {Length: 4253} {Pfam: C2 domain [PF00168.32, score=183.1]; CEP76 C2 domain [PF15627.8, score=21.2]} {Human: ENSG00000067715, SYT1, synaptotagmin 1, [RH, Score=424, Expect=1e-146]; ENSG00000143858, SYT2, synaptotagmin 2, [RH, Score=409, Expect=2e-140]} {Mouse: ENSMUSG00000035864, Syt1, synaptotagmin I, [RH, Score=422, Expect=6e-146]; ENSMUSG00000026452, Syt2, synaptotagmin II, [RH, Score=409, Expect=2e-140]} {Dmel: FBgn0004242, Syt1, Synaptotagmin 1, [RH, Score=509, Expect=3e-179]} {Celegans: WBGene00004921, snt-1, Synaptotagmin-1, [RH, Score=440, Expect=6e-153]} {Smed: dd_Smed_v6_4222_0_1, dd_Smed_v6_4222_0_1, [RH, Score=567, Expect=0.0]} {RNA1509_20917, RNA1509_4420} {RNA1310_2560, RNA1509_20917, RNA1509_4420} {RNA1509_20917, RNA1509_4420, RNA815_2113.1}

Cumulative graph for MligTC455_44210

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.199 4.727 0.84993 1.00000
RegionR2 1.247 4.727 0.02252 0.16561
RegionR3 0.882 4.727 0.05554 0.41440
RegionR4 0.6 4.727 0.29016 0.60073
RegionR5 0.125 4.727 0.78752 1.00000
RegionR6 0.092 4.727 0.85093 1.00000
RegionR7 -1.389 4.727 0.03817 0.37428
RegionR8 -1.357 4.727 0.09010 0.56771

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.741 4.727 0.61134 1.00000
RegenerationR2 -0.854 4.727 0.11912 0.53708
RegenerationR3 -0.343 4.727 0.54710 0.88216
RegenerationR4 -0.208 4.727 0.73113 0.96473
RegenerationR5 0.474 4.727 0.40502 0.80193
RegenerationR6 -0.357 4.727 0.55000 0.83889
RegenerationBL -0.157 4.727 0.81940 1.00000
RegenerationTP 1.593 4.727 0.01927 0.23815


Genes with expression patterns similar to MligTC455_44210

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44210 1022 21.29 Mlig455_026521

Neo: -

Age: -

 SYT1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_026521 {REF} {Length: 4253} {Pfam: C2 domain [PF00168.32, score=183.1]; CEP76 C2 domain [PF15627.8, score=21.2]} {Human: ENSG00000067715, SYT1, synaptotagmin 1, [RH, Score=424, Expect=1e-146]; ENSG00000143858, SYT2, synaptotagmin 2, [RH, Score=409, Expect=2e-140]} {Mouse: ENSMUSG00000035864, Syt1, synaptotagmin I, [RH, Score=422, Expect=6e-146]; ENSMUSG00000026452, Syt2, synaptotagmin II, [RH, Score=409, Expect=2e-140]} {Dmel: FBgn0004242, Syt1, Synaptotagmin 1, [RH, Score=509, Expect=3e-179]} {Celegans: WBGene00004921, snt-1, Synaptotagmin-1, [RH, Score=440, Expect=6e-153]} {Smed: dd_Smed_v6_4222_0_1, dd_Smed_v6_4222_0_1, [RH, Score=567, Expect=0.0]} {RNA1509_20917, RNA1509_4420} {RNA1310_2560, RNA1509_20917, RNA1509_4420} {RNA1509_20917, RNA1509_4420, RNA815_2113.1}
2. MligTC455_27304 420 8.75 Mlig455_027275

Neo: -

Age: Down-Up-Down

Region-enriched R2: 1.861/0.02823

 1.759 - - - 0.809 - 0.950 Mlig455_027275 {REF} {Length: 2821} {Pfam: Cupin-like domain [PF13621.8, score=94.1]; Cupin superfamily protein [PF08007.14, score=22.4]} {Mouse: ENSMUSG00000030752, Kdm8, lysine (K)-specific demethylase 8, [Score=59.7, Expect=3e-09]} {Dmel: FBgn0035166, CG13902, [Score=59.7, Expect=2e-09]} {Celegans: WBGene00007387, jmjd-5, JuMonJi (Transcription factor) Domain protein, [Score=55.5, Expect=5e-08]} {Smed: dd_Smed_v6_14490_0_1, dd_Smed_v6_14490_0_1, [RH, Score=349, Expect=5e-117]} {RNA1509_20375} {RNA1310_22474} {RNA815_8659}
3. MligTC455_25882 569 11.86 Mlig455_005912

Neo: -

Age: Down-Up-Down

Region-enriched R3: 1.871/0.02278

 NCALD 1.679 - 0.729 - - - 0.950 Mlig455_005912 {REF} {Length: 1243} {Pfam: Leucine rich repeat [PF13855.8, score=90.9]; EF-hand domain pair [PF13499.8, score=77.3]; EF hand [PF00036.34, score=73.6]; EF-hand domain [PF13405.8, score=62.8]; EF hand [PF13202.8, score=58.4]; EF-hand domain pair [PF13833.8, score=52.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=43.1]; Leucine-rich repeat [PF14580.8, score=27.8]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=19.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=18.6]} {Human: ENSG00000104490, NCALD, neurocalcin delta, [Score=201, Expect=8e-61]; ENSG00000115756, HPCAL1, hippocalcin like 1, [Score=191, Expect=6e-57]} {Mouse: ENSMUSG00000051359, Ncald, neurocalcin delta, [Score=201, Expect=6e-61]} {Dmel: FBgn0036926, CG7646, [RH, Score=229, Expect=1e-71]} {Celegans: WBGene00003564, ncs-2, Neuronal calcium sensor 2, [RH, Score=252, Expect=9e-81]} {Smed: dd_Smed_v6_6534_0_2, dd_Smed_v6_6534_0_2, [RH, Score=369, Expect=4e-126]} {RNA1509_48802} {RNA1310_30544.1, RNA1509_48802} {RNA1509_48802, RNA815_13223.1}
4. MligTC455_28309 78 1.63 Mlig455_021915

Neo: -

Age: Up-Down-Up

 FAT3 0.961 - - - - - 0.961 Mlig455_021915 {REF} {Length: 12300} {Pfam: Cadherin domain [PF00028.19, score=270.9]; Cadherin-like [PF16184.7, score=24.6]} {Human: ENSG00000165323, FAT3, FAT atypical cadherin 3, [Score=241, Expect=2e-65]; ENSG00000282908, FAT3, FAT atypical cadherin 3, [Score=241, Expect=2e-65]; ENSG00000083857, FAT1, FAT atypical cadherin 1, [Score=238, Expect=2e-64]} {Mouse: ENSMUSG00000070047, Fat1, FAT atypical cadherin 1, [Score=246, Expect=3e-67]; ENSMUSG00000074505, Fat3, FAT atypical cadherin 3, [Score=243, Expect=2e-66]} {Dmel: FBgn0261574, kug, kugelei, [Score=245, Expect=3e-67]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=193, Expect=2e-50]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=196, Expect=2e-51]} {RNA1509_14139} {RNA1310_570.1} {RNA815_134.1}
5. MligTC455_44131 2238 46.63 Mlig455_008740, Mlig455_008756

Neo: -

Age: logFC(26M/2M)=0.231

 BPHL 0.961 - - - - - 0.961

Mlig455_008740 {REF} {Length: 1106} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF00561.22, score=74.8]; Alpha/beta hydrolase family [PF12697.9, score=61.2]; Serine aminopeptidase, S33 [PF12146.10, score=55.0]; TAP-like protein [PF08386.12, score=23.7]} {Human: ENSG00000137274, BPHL, biphenyl hydrolase like, [RH, Score=233, Expect=5e-76]} {Mouse: ENSMUSG00000038286, Bphl, biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen), [RH, Score=224, Expect=2e-72]} {Dmel: FBgn0038974, CG5377, [RH, Score=202, Expect=2e-64]} {Celegans: WBGene00019280, K01A2.5, [RH, Score=106, Expect=2e-27]} {RNA1509_36267} {RNA1310_32073} {RNA815_14961}

Mlig455_008756 {REF} {Length: 1106} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF00561.22, score=74.8]; Alpha/beta hydrolase family [PF12697.9, score=61.2]; Serine aminopeptidase, S33 [PF12146.10, score=55.0]; TAP-like protein [PF08386.12, score=23.7]} {Human: ENSG00000137274, BPHL, biphenyl hydrolase like, [RH, Score=233, Expect=5e-76]} {Mouse: ENSMUSG00000038286, Bphl, biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen), [RH, Score=224, Expect=2e-72]} {Dmel: FBgn0038974, CG5377, [RH, Score=202, Expect=2e-64]} {Celegans: WBGene00019280, K01A2.5, [RH, Score=106, Expect=2e-27]} {RNA1509_11876, RNA1509_17663, RNA1509_36267} {RNA1310_32073, RNA1509_11876, RNA1509_17663, RNA1509_36267} {RNA1509_11876, RNA1509_17663, RNA1509_36267, RNA815_14961}
6. MligTC455_21745 98 2.05 Mlig455_068754

Neo: -

Age: -

Region-enriched R4: 5.353/0.04120

 CYLD 0.959 - - - - - 0.959 Mlig455_068754 {REF} {Length: 3476} {TRANSSPLICED} {Pfam: CAP-Gly domain [PF01302.27, score=36.5]} {Human: ENSG00000083799, CYLD, CYLD lysine 63 deubiquitinase, [Score=276, Expect=6e-79]} {Mouse: ENSMUSG00000036712, Cyld, CYLD lysine 63 deubiquitinase, [Score=275, Expect=8e-79]} {Dmel: FBgn0032210, CYLD, Cylindromatosis, [Score=290, Expect=5e-88]} {Celegans: WBGene00009594, cyld-1, CYLinDromatosis (Human disease gene) homolog, [RH, Score=192, Expect=1e-50]} {Smed: dd_Smed_v6_3043_0_1, dd_Smed_v6_3043_0_1, [Score=143, Expect=3e-35]} {RNA1509_13346} {RNA1310_3957.1} {RNA815_1281.1}
7. MligTC455_35394 477 9.94 Mlig455_046493

Neo: -

Age: -

 AMPD2 0.952 - - - - - 0.952 Mlig455_046493 {REF} {Length: 4415} {TRANSSPLICED} {Pfam: AMP deaminase [PF19326.1, score=905.1]; Adenosine deaminase [PF00962.24, score=47.7]} {Human: ENSG00000116337, AMPD2, adenosine monophosphate deaminase 2, [RH, Score=790, Expect=0.0]} {Mouse: ENSMUSG00000027889, Ampd2, adenosine monophosphate deaminase 2, [RH, Score=789, Expect=0.0]} {Dmel: FBgn0052626, AMPdeam, AMP deaminase, [RH, Score=719, Expect=0.0]} {Celegans: WBGene00016415, ampd-1, AMP deaminase, [RH, Score=711, Expect=0.0]} {Smed: dd_Smed_v6_9436_0_2, dd_Smed_v6_9436_0_2, [RH, Score=716, Expect=0.0]} {RNA1509_29268, RNA1509_47517, RNA1509_5825} {RNA1310_7860.1, RNA1509_29268, RNA1509_47517, RNA1509_5825} {RNA1509_29268, RNA1509_47517, RNA1509_5825, RNA815_2451}
8. MligTC455_52618 1337 27.86 Mlig455_058836

Neo: -

Age: logFC(26M/2M)=-0.279

Region-enriched R7: 1.689/0.00009

 CPEB3 0.95 - - - - - 0.950 Mlig455_058836 {REF} {Length: 4908} {TRANSSPLICED} {Pfam: RNA recognition motif [PF16367.7, score=116.3]; Cytoplasmic polyadenylation element-binding protein ZZ domain [PF16366.7, score=73.8]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=43.6]} {Human: ENSG00000107864, CPEB3, cytoplasmic polyadenylation element binding protein 3, [RH, Score=485, Expect=5e-164]; ENSG00000283087, CPEB2, cytoplasmic polyadenylation element binding protein 2, [RH, Score=485, Expect=6e-160]; ENSG00000137449, CPEB2, cytoplasmic polyadenylation element binding protein 2, [RH, Score=485, Expect=6e-160]; ENSG00000113742, CPEB4, cytoplasmic polyadenylation element binding protein 4, [RH, Score=482, Expect=2e-162]} {Mouse: ENSMUSG00000039782, Cpeb2, cytoplasmic polyadenylation element binding protein 2, [RH, Score=486, Expect=1e-160]; ENSMUSG00000111861, Cpeb3, cytoplasmic polyadenylation element binding protein 3, [RH, Score=485, Expect=4e-164]; ENSMUSG00000039652, Cpeb3, cytoplasmic polyadenylation element binding protein 3, [RH, Score=485, Expect=4e-164]; ENSMUSG00000020300, Cpeb4, cytoplasmic polyadenylation element binding protein 4, [RH, Score=483, Expect=2e-162]} {Dmel: FBgn0264307, orb2, [RH, Score=471, Expect=2e-158]} {Celegans: WBGene00000770, cpb-1, Cytoplasmic polyadenylation element-binding protein 1, [RH, Score=278, Expect=5e-86]} {Smed: dd_Smed_v6_8889_0_1, dd_Smed_v6_8889_0_1, [RH, Score=489, Expect=1e-170]} {RNA1509_11433} {RNA1310_8780, RNA1509_11433} {RNA1509_11433, RNA815_6808.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA