M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44456

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44456 464 9.67 Mlig455_055489

Neo: -

Age: -

 FH Mlig455_055489 {REF} {Length: 2695} {TRANSSPLICED} {Pfam: Lyase [PF00206.22, score=358.0]; Fumarase C C-terminus [PF10415.11, score=87.5]} {Human: ENSG00000091483, FH, fumarate hydratase, [RH, Score=645, Expect=0.0]} {Mouse: ENSMUSG00000026526, Fh1, fumarate hydratase 1, [RH, Score=648, Expect=0.0]} {Dmel: FBgn0028336, l(1)G0255, lethal (1) G0255, [RH, Score=635, Expect=0.0]} {Celegans: WBGene00001503, fum-1, Probable fumarate hydratase, mitochondrial, [RH, Score=656, Expect=0.0]} {Smed: dd_Smed_v6_741_1_1, dd_Smed_v6_741_1_1, [RH, Score=536, Expect=0.0]} {RNA1509_11902, RNA1509_58388} {RNA1310_18879.1, RNA1509_11902, RNA1509_58388} {RNA1509_11902, RNA1509_58388, RNA815_7234}

Cumulative graph for MligTC455_44456

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.55 3.778 0.62524 1.00000
RegionR2 0.638 3.778 0.23516 0.60866
RegionR3 0.182 3.778 0.63435 1.00000
RegionR4 0.101 3.778 0.84216 1.00000
RegionR5 -0.406 3.778 0.25461 0.57234
RegionR6 0.103 3.778 0.80101 1.00000
RegionR7 -0.428 3.778 0.47085 1.00000
RegionR8 0.359 3.778 0.58190 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.699 3.778 0.39321 1.00000
RegenerationR2 0.031 3.778 0.94691 1.00000
RegenerationR3 0.829 3.778 0.08102 0.46796
RegenerationR4 -0.114 3.778 0.82359 0.99545
RegenerationR5 0.599 3.778 0.16336 0.58785
RegenerationR6 0.944 3.778 0.04819 0.27460
RegenerationBL -0.067 3.778 0.93018 1.00000
RegenerationTP 0.541 3.778 0.42840 0.85157


Genes with expression patterns similar to MligTC455_44456

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44456 464 9.67 Mlig455_055489

Neo: -

Age: -

 FH 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_055489 {REF} {Length: 2695} {TRANSSPLICED} {Pfam: Lyase [PF00206.22, score=358.0]; Fumarase C C-terminus [PF10415.11, score=87.5]} {Human: ENSG00000091483, FH, fumarate hydratase, [RH, Score=645, Expect=0.0]} {Mouse: ENSMUSG00000026526, Fh1, fumarate hydratase 1, [RH, Score=648, Expect=0.0]} {Dmel: FBgn0028336, l(1)G0255, lethal (1) G0255, [RH, Score=635, Expect=0.0]} {Celegans: WBGene00001503, fum-1, Probable fumarate hydratase, mitochondrial, [RH, Score=656, Expect=0.0]} {Smed: dd_Smed_v6_741_1_1, dd_Smed_v6_741_1_1, [RH, Score=536, Expect=0.0]} {RNA1509_11902, RNA1509_58388} {RNA1310_18879.1, RNA1509_11902, RNA1509_58388} {RNA1509_11902, RNA1509_58388, RNA815_7234}
2. MligTC455_44457 503 10.49 Mlig455_055509

Neo: -

Age: -

 FH 5.776 0.982 0.989 0.939 0.958 0.950 0.958 Mlig455_055509 {REF} {Length: 2580} {TRANSSPLICED} {Pfam: Lyase [PF00206.22, score=359.5]; Fumarase C C-terminus [PF10415.11, score=87.3]} {Human: ENSG00000091483, FH, fumarate hydratase, [RH, Score=645, Expect=0.0]} {Mouse: ENSMUSG00000026526, Fh1, fumarate hydratase 1, [RH, Score=648, Expect=0.0]} {Dmel: FBgn0028336, l(1)G0255, lethal (1) G0255, [RH, Score=635, Expect=0.0]} {Celegans: WBGene00001503, fum-1, Probable fumarate hydratase, mitochondrial, [RH, Score=660, Expect=0.0]} {Smed: dd_Smed_v6_741_1_1, dd_Smed_v6_741_1_1, [RH, Score=536, Expect=0.0]} {RNA1509_11902, RNA1509_12937} {RNA1310_18879.1, RNA1509_12937} {RNA1509_12937, RNA815_7234}
3. MligTC455_07972 548 11.41 Mlig455_059614

Neo: -

Age: -

 BRCC3 0.972 - - - 0.972 - - Mlig455_059614 {REF} {Length: 1474} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=73.8]; Prokaryotic homologs of the JAB domain [PF14464.8, score=29.4]; BRCC36 C-terminal helical domain [PF18110.3, score=26.6]} {Human: ENSG00000185515, BRCC3, BRCA1/BRCA2-containing complex subunit 3, [RH, Score=133, Expect=3e-37]} {Mouse: ENSMUSG00000031201, Brcc3, BRCA1/BRCA2-containing complex, subunit 3, [RH, Score=133, Expect=3e-37]; ENSMUSG00000112039, Gm5136, predicted gene 5136, [RH, Score=127, Expect=3e-35]} {Dmel: FBgn0028694, Rpn11, Regulatory particle non-ATPase 11, [Score=45.8, Expect=1e-05]} {Celegans: WBGene00000817, csn-5, COP9 signalosome complex subunit 5, [Score=47.4, Expect=4e-06]} {Smed: dd_Smed_v6_2781_0_1, dd_Smed_v6_2781_0_1, [Score=48.9, Expect=8e-07]} {RNA1509_11427, RNA1509_35550, RNA1509_51888} {RNA1310_16472.1, RNA1509_35550, RNA1509_51888} {RNA1509_35550, RNA1509_51888, RNA815_8722}
4. MligTC455_47037 2387 49.73 Mlig455_037878, Mlig455_039047

Neo: Irradiation

Age: -

 RIOK2 0.972 - - - - - 0.972

Mlig455_037878 {REF} {Length: 1740} {Pfam: RIO1 family [PF01163.24, score=136.4]; Rio2, N-terminal [PF09202.13, score=82.7]; Phosphotransferase enzyme family [PF01636.25, score=31.6]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=28.7]} {Human: ENSG00000058729, RIOK2, RIO kinase 2, [RH, Score=275, Expect=6e-86]} {Mouse: ENSMUSG00000116564, Riok2, RIO kinase 2, [RH, Score=273, Expect=1e-85]} {Dmel: FBgn0039306, RIOK2, RIO kinase 2, [RH, Score=276, Expect=7e-87]} {Celegans: WBGene00013688, riok-2, Serine/threonine-protein kinase RIO2, [RH, Score=263, Expect=6e-82]} {Smed: dd_Smed_v6_5634_0_1, dd_Smed_v6_5634_0_1, [RH, Score=179, Expect=8e-51]} {RNA1509_13921, RNA1509_19503, RNA1509_20886, RNA1509_30978, RNA1509_49231} {RNA1310_20483, RNA1509_13921, RNA1509_19503, RNA1509_20886, RNA1509_30978, RNA1509_49231} {RNA1509_13921, RNA1509_19503, RNA1509_20886, RNA1509_30978, RNA1509_49231, RNA815_8494}

Mlig455_039047 {REF} {Length: 1607} {Pfam: RIO1 family [PF01163.24, score=136.4]; Rio2, N-terminal [PF09202.13, score=82.7]; Phosphotransferase enzyme family [PF01636.25, score=29.6]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=28.7]} {Human: ENSG00000058729, RIOK2, RIO kinase 2, [RH, Score=276, Expect=2e-86]} {Mouse: ENSMUSG00000116564, Riok2, RIO kinase 2, [RH, Score=275, Expect=4e-86]} {Dmel: FBgn0039306, RIOK2, RIO kinase 2, [RH, Score=274, Expect=6e-86]} {Celegans: WBGene00013688, riok-2, Serine/threonine-protein kinase RIO2, [RH, Score=266, Expect=3e-83]} {Smed: dd_Smed_v6_5634_0_1, dd_Smed_v6_5634_0_1, [RH, Score=175, Expect=2e-49]} {RNA1509_19503} {RNA1310_20483} {RNA815_8494}
5. MligTC455_19203 1137 23.7 Mlig455_018232

Neo: -

Age: logFC(26M/2M)=2.386

Region-enriched R4: 1.825/0.00025
Region-enriched R5: 1.146/0.00880

 DEGS1 0.97 - - - - - 0.970 Mlig455_018232 {REF} {Length: 2866} {TRANSSPLICED} {Pfam: Fatty acid desaturase [PF00487.26, score=85.1]; Sphingolipid Delta4-desaturase (DES) [PF08557.12, score=76.9]} {Human: ENSG00000143753, DEGS1, delta 4-desaturase, sphingolipid 1, [RH, Score=404, Expect=9e-141]; ENSG00000168350, DEGS2, delta 4-desaturase, sphingolipid 2, [RH, Score=392, Expect=5e-136]} {Mouse: ENSMUSG00000038633, Degs1, delta(4)-desaturase, sphingolipid 1, [RH, Score=402, Expect=9e-140]} {Dmel: FBgn0001941, ifc, infertile crescent, [RH, Score=443, Expect=3e-156]} {Celegans: WBGene00013197, ttm-5, Putative sphingolipid delta(4)-desaturase/C4-monooxygenase, [RH, Score=364, Expect=8e-125]} {Smed: dd_Smed_v6_1100_0_1, dd_Smed_v6_1100_0_1, [RH, Score=449, Expect=1e-158]} {RNA1509_17143} {RNA1310_6477.1} {RNA815_6765}
6. MligTC455_19512 2938 61.2 Mlig455_060635

Neo: -

Age: logFC(26M/2M)=-1.445

 CIAO2B 0.967 - - - - - 0.967 Mlig455_060635 {REF} {Length: 1171} {TRANSSPLICED} {Pfam: Iron-sulfur cluster assembly protein [PF01883.21, score=62.2]} {Human: ENSG00000166595, CIAO2B, cytosolic iron-sulfur assembly component 2B, [RH, Score=221, Expect=1e-74]} {Mouse: ENSMUSG00000031879, Ciao2b, cytosolic iron-sulfur assembly component 2B, [RH, Score=221, Expect=8e-75]} {Dmel: FBgn0036107, galla-2, [RH, Score=201, Expect=3e-67]} {Celegans: WBGene00009736, F45G2.10, MIP18 family protein F45G2.10, [RH, Score=171, Expect=2e-55]} {Smed: dd_Smed_v6_6658_0_1, dd_Smed_v6_6658_0_1, [RH, Score=146, Expect=1e-45]} {RNA1509_20293, RNA1509_22139, RNA1509_5597} {RNA1310_35958, RNA1509_20293, RNA1509_22139, RNA1509_5597} {RNA1509_20293, RNA1509_22139, RNA1509_5597, RNA815_16072}
7. MligTC455_19956 573 11.93 Mlig455_014311

Neo: -

Age: -

Region-enriched R4: 1.718/0.00095
Region-enriched R5: 1.232/0.00308

 PHYHD1 0.964 - - - - - 0.964 Mlig455_014311 {REF} {Length: 1944} {TRANSSPLICED} {Pfam: Phytanoyl-CoA dioxygenase (PhyH) [PF05721.15, score=176.2]} {Human: ENSG00000175287, PHYHD1, phytanoyl-CoA dioxygenase domain containing 1, [RH, Score=241, Expect=5e-75]} {Mouse: ENSMUSG00000079484, Phyhd1, phytanoyl-CoA dioxygenase domain containing 1, [RH, Score=234, Expect=2e-72]} {Dmel: FBgn0037819, CG14688, [RH, Score=208, Expect=6e-63]} {Celegans: WBGene00013650, Y105C5B.9, Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog, [RH, Score=219, Expect=3e-67]} {Smed: dd_Smed_v6_8029_0_1, dd_Smed_v6_8029_0_1, [RH, Score=248, Expect=2e-78]} {RNA1509_441} {RNA1310_32563.2} {RNA815_15490}
8. MligTC455_45680 702 14.61 Mlig455_064286

Neo: -

Age: -

 METTL4 0.964 - - - - - 0.964 Mlig455_064286 {REF} {Length: 1342} {TRANSSPLICED} {Pfam: MT-A70 [PF05063.16, score=97.6]} {Human: ENSG00000101574, METTL4, methyltransferase like 4, [RH, Score=155, Expect=5e-42]} {Mouse: ENSMUSG00000055660, Mettl4, methyltransferase like 4, [RH, Score=150, Expect=2e-40]} {Dmel: FBgn0015351, CG14906, [RH, Score=101, Expect=1e-23]} {Celegans: WBGene00015939, C18A3.1, DNA N6-methyl methyltransferase, [RH, Score=92.0, Expect=2e-20]} {Smed: dd_Smed_v6_10885_0_1, dd_Smed_v6_10885_0_1, [RH, Score=130, Expect=2e-34]} {RNA1509_31446} {RNA1310_19002, RNA1509_31446} {RNA1509_31446, RNA815_11395}
9. MligTC455_42834 324 6.76 Mlig455_006852

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.037

 MRPS21 0.96 - - - - - 0.960 Mlig455_006852 {REF} {Length: 475} {TRANSSPLICED} {Pfam: Ribosomal protein S21 [PF01165.22, score=23.3]} {Human: ENSG00000266472, MRPS21, mitochondrial ribosomal protein S21, [RH, Score=81.6, Expect=3e-21]} {Mouse: ENSMUSG00000054312, Mrps21, mitochondrial ribosomal protein S21, [RH, Score=79.0, Expect=2e-20]} {Dmel: FBgn0044511, mRpS21, mitochondrial ribosomal protein S21, [RH, Score=67.0, Expect=6e-16]} {Celegans: WBGene00017924, mrps-21, Mitochondrial Ribosomal Protein, Small, [RH, Score=46.6, Expect=7e-08]} {Smed: dd_Smed_v6_1993_0_1, dd_Smed_v6_1993_0_1, [RH, Score=88.6, Expect=2e-24]} {RNA1509_19347} {RNA1310_61090} {RNA815_37726}
10. MligTC455_44805 10601 220.85 Mlig455_067515

Neo: -

Age: -

Region-enriched R5: 1.134/0.00011

 TXNDC2 0.96 - - - - - 0.960 Mlig455_067515 {REF} {Length: 935} {TRANSSPLICED} {Pfam: Thioredoxin [PF00085.22, score=96.4]; Thioredoxin-like domain [PF13098.8, score=29.2]; Thioredoxin-like [PF13905.8, score=27.7]; OST3 / OST6 family, transporter family [PF04756.15, score=27.5]; Thioredoxin [PF14595.8, score=25.7]; Thioredoxin-like [PF13899.8, score=24.0]; AhpC/TSA family [PF00578.23, score=22.0]; Redoxin [PF08534.12, score=19.7]} {Human: ENSG00000168454, TXNDC2, thioredoxin domain containing 2, [RH, Score=84.0, Expect=8e-20]} {Mouse: ENSMUSG00000028367, Txn1, thioredoxin 1, [Score=87.4, Expect=1e-23]; ENSMUSG00000024583, Txnl1, thioredoxin-like 1, [Score=87.0, Expect=1e-21]} {Dmel: FBgn0035631, Txl, Thioredoxin-like, [Score=113, Expect=5e-32]} {Celegans: WBGene00021933, Y55F3AR.2, [RH, Score=87.8, Expect=2e-22]} {Smed: dd_Smed_v6_12784_0_1, dd_Smed_v6_12784_0_1, [Score=94.4, Expect=2e-26]} {RNA1509_13193, RNA1509_2100, RNA1509_33049, RNA1509_3533, RNA1509_35874, RNA1509_37282, RNA1509_5065} {RNA1310_37636, RNA1509_13193, RNA1509_2100, RNA1509_33049, RNA1509_3533, RNA1509_35874, RNA1509_37282, RNA1509_5065} {RNA1509_13193, RNA1509_2100, RNA1509_33049, RNA1509_3533, RNA1509_35874, RNA1509_37282, RNA1509_5065, RNA815_17817.1}
11. MligTC455_45015 2439 50.8 Mlig455_042677

Neo: -

Age: -

Region-enriched R4: 1.190/0.00596

 CISD2 0.959 - - - - - 0.959 Mlig455_042677 {REF} {Length: 1522} {Pfam: Iron-containing outer mitochondrial membrane protein N-terminus [PF10660.11, score=59.9]; Iron-binding zinc finger CDGSH type [PF09360.12, score=44.5]} {Human: ENSG00000145354, CISD2, CDGSH iron sulfur domain 2, [RH, Score=105, Expect=2e-29]} {Mouse: ENSMUSG00000028165, Cisd2, CDGSH iron sulfur domain 2, [RH, Score=103, Expect=5e-29]} {Dmel: FBgn0062442, Cisd2, CDGSH iron sulfur domain 2, [RH, Score=105, Expect=5e-30]} {Celegans: WBGene00044026, cisd-1, CDGSH Iron Sulfur Domain protein homolog, [RH, Score=85.1, Expect=2e-22]} {Smed: dd_Smed_v6_2098_0_1, dd_Smed_v6_2098_0_1, [Score=115, Expect=5e-34]} {RNA1509_4258, RNA1509_45312} {RNA1310_1327, RNA1509_4258, RNA1509_45312} {RNA1509_4258, RNA1509_45312, RNA815_16982}
12. MligTC455_53615 230 4.8 Mlig455_024582

Neo: -

Age: -

 SLC25A42 0.957 - - - - - 0.957 Mlig455_024582 {REF} {Length: 2862} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=229.7]; Mitochondrial SLC25 homolog [PF18405.3, score=18.0]} {Human: ENSG00000181035, SLC25A42, solute carrier family 25 member 42, [RH, Score=286, Expect=8e-95]} {Mouse: ENSMUSG00000002346, Slc25a42, solute carrier family 25, member 42, [RH, Score=287, Expect=1e-95]} {Dmel: FBgn0067783, DPCoAC, Dephosphocoenzyme A carrier, [RH, Score=284, Expect=9e-94]} {Celegans: WBGene00009666, slc-25A42, SLC (SoLute Carrier) homolog, [RH, Score=270, Expect=2e-89]} {Smed: dd_Smed_v6_11616_0_1, dd_Smed_v6_11616_0_1, [RH, Score=284, Expect=9e-95]} {RNA1509_14364, RNA1509_32699, RNA1509_47354, RNA1509_51821} {RNA1310_16060, RNA1509_14364, RNA1509_32699, RNA1509_47354, RNA1509_51821} {RNA1509_14364, RNA1509_32699, RNA1509_47354, RNA1509_51821, RNA815_8391}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA