M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44544

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44544 620 12.92 Mlig455_058182

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.294/0.00842
Region-enriched R5: 1.190/0.00082

 PPP2R3C Mlig455_058182 {REF} {Length: 1425} {TRANSSPLICED} {Human: ENSG00000092020, PPP2R3C, protein phosphatase 2 regulatory subunit B''gamma, [Score=96.7, Expect=2e-22]} {Mouse: ENSMUSG00000021022, Ppp2r3c, protein phosphatase 2, regulatory subunit B'', gamma, [Score=96.7, Expect=1e-22]} {Smed: dd_Smed_v6_10614_0_1, dd_Smed_v6_10614_0_1, [Score=92.4, Expect=1e-21]} {RNA1509_19511} {RNA1310_13100.1} {RNA815_4481}

Cumulative graph for MligTC455_44544

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.056 3.989 0.95347 1.00000
RegionR2 0.239 3.989 0.56543 0.92654
RegionR3 -0.337 3.989 0.35357 0.88918
RegionR4 1.294 3.989 0.00076 0.00842
RegionR5 1.19 3.989 0.00004 0.00082
RegionR6 0.155 3.989 0.66580 1.00000
RegionR7 -0.924 3.989 0.07743 0.53675
RegionR8 -1.673 3.989 0.01543 0.24202

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.302 3.989 0.21442 0.95229
RegenerationR2 -0.42 3.989 0.20535 0.65258
RegenerationR3 0.328 3.989 0.40491 0.80568
RegenerationR4 -0.609 3.989 0.10562 0.50117
RegenerationR5 -0.037 3.989 0.90290 1.00000
RegenerationR6 -0.021 3.989 0.95594 1.00000
RegenerationBL 0.038 3.989 0.95267 1.00000
RegenerationTP 0.91 3.989 0.13380 0.54967


Genes with expression patterns similar to MligTC455_44544

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44544 620 12.92 Mlig455_058182

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.294/0.00842
Region-enriched R5: 1.190/0.00082

 PPP2R3C 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_058182 {REF} {Length: 1425} {TRANSSPLICED} {Human: ENSG00000092020, PPP2R3C, protein phosphatase 2 regulatory subunit B''gamma, [Score=96.7, Expect=2e-22]} {Mouse: ENSMUSG00000021022, Ppp2r3c, protein phosphatase 2, regulatory subunit B'', gamma, [Score=96.7, Expect=1e-22]} {Smed: dd_Smed_v6_10614_0_1, dd_Smed_v6_10614_0_1, [Score=92.4, Expect=1e-21]} {RNA1509_19511} {RNA1310_13100.1} {RNA815_4481}
2. MligTC455_44545 600 12.5 Mlig455_058204

Neo: -

Age: Down-Up-Down

Region-enriched R4: 1.212/0.01426
Region-enriched R5: 1.192/0.00067

 PPP2R3C 5.938 0.998 0.998 0.996 0.963 0.987 0.996 Mlig455_058204 {REF} {Length: 2622} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=44.6]; EF-hand domain [PF13405.8, score=34.0]; EF-hand domain [PF17958.3, score=28.6]; EF hand [PF00036.34, score=21.8]; EF hand [PF13202.8, score=19.7]} {Human: ENSG00000092020, PPP2R3C, protein phosphatase 2 regulatory subunit B''gamma, [RH, Score=568, Expect=0.0]} {Mouse: ENSMUSG00000021022, Ppp2r3c, protein phosphatase 2, regulatory subunit B'', gamma, [RH, Score=569, Expect=0.0]} {Dmel: FBgn0038744, CG4733, [Score=131, Expect=2e-32]} {Celegans: WBGene00007710, rsa-1, Serine/threonine-protein phosphatase 2A regulatory subunit rsa-1, [RH, Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_10614_0_1, dd_Smed_v6_10614_0_1, [RH, Score=551, Expect=0.0]} {RNA1509_19511, RNA1509_7728} {RNA1310_13100.1, RNA1509_19511, RNA1509_7728} {RNA1509_19511, RNA1509_7728, RNA815_4481}
3. MligTC455_41346 996 20.75 Mlig455_001785

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.236/0.00029

 NUP155 1.755 0.797 - - - - 0.958 Mlig455_001785 {REF} {Length: 4486} {TRANSSPLICED} {Pfam: Nup133 N terminal like [PF08801.13, score=186.4]; Non-repetitive/WGA-negative nucleoporin C-terminal [PF03177.16, score=47.7]} {Human: ENSG00000113569, NUP155, nucleoporin 155, [RH, Score=298, Expect=9e-83]} {Mouse: ENSMUSG00000022142, Nup155, nucleoporin 155, [RH, Score=521, Expect=1e-162]} {Dmel: FBgn0021761, Nup154, Nucleoporin 154kD, [RH, Score=345, Expect=5e-99]} {Celegans: WBGene00003794, npp-8, Nuclear Pore complex Protein, [RH, Score=239, Expect=1e-64]} {Smed: dd_Smed_v6_7844_0_1, dd_Smed_v6_7844_0_1, [RH, Score=572, Expect=0.0]} {RNA1509_7166} {RNA1310_1724.1, RNA1509_7166} {RNA1509_7166, RNA815_3166}
4. MligTC455_22045 2080 43.33 Mlig455_026346

Neo: -

Age: Down-Up-Down

Region-specific R7: 4.192

Region-enriched R7: 3.579/0.00000
Region-enriched R8: 2.029/0.01420

Regeneration-downregulated BL: -2.769

Regeneration-depleted BL: -2.769

 ARL2BP 0.969 - - - 0.969 - - Mlig455_026346 {REF} {Length: 2888} {Pfam: The ARF-like 2 binding protein BART [PF11527.10, score=93.5]} {Human: ENSG00000102931, ARL2BP, ADP ribosylation factor like GTPase 2 binding protein, [RH, Score=117, Expect=4e-33]} {Mouse: ENSMUSG00000031776, Arl2bp, ADP-ribosylation factor-like 2 binding protein, [RH, Score=117, Expect=2e-33]} {Smed: dd_Smed_v6_6975_0_1, dd_Smed_v6_6975_0_1, [RH, Score=145, Expect=3e-44]} {RNA1509_8574} {RNA1310_26001} {RNA815_10256.1}
5. MligTC455_36753 212 4.42 Mlig455_055024

Neo: Irradiation

Age: Up-Up-Down

Region-enriched R4: 1.685/0.04355

 ZNF700 0.958 - - - - - 0.958 Mlig455_055024 {REF} {Length: 3631} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=64.7]; C2H2-type zinc finger [PF13894.8, score=54.2]; Zinc-finger double domain [PF13465.8, score=47.4]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=29.6]; zinc-finger-containing domain [PF11672.10, score=23.2]} {Human: ENSG00000196757, ZNF700, zinc finger protein 700, [Score=107, Expect=2e-23]} {Mouse: ENSMUSG00000078877, Gm14295, predicted gene 14295, [Score=110, Expect=3e-24]; ENSMUSG00000078902, Gm14443, predicted gene 14443, [Score=108, Expect=6e-24]} {Dmel: FBgn0000286, Cf2, Chorion factor 2, [Score=74.7, Expect=1e-13]} {Celegans: WBGene00003380, mnm-2, Zinc finger protein mnm-2, [Score=76.6, Expect=3e-15]} {Smed: dd_Smed_v6_10911_0_1, dd_Smed_v6_10911_0_1, [Score=94.7, Expect=7e-20]} {RNA1509_18013} {RNA1310_5466.1} {RNA815_8226}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA