M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44658

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44658 12 0.25 Mlig455_054317

Neo: -

Age: -

 Mlig455_054317 {REF} {Length: 2882} {Pfam: PDZ domain [PF17820.3, score=33.0]; PDZ domain [PF00595.26, score=32.9]} {RNA1310_148560}

Cumulative graph for MligTC455_44658

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_44658

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22402 31 0.64 Mlig455_012784

Neo: -

Age: -

 1 - - 1.000 - - - Mlig455_012784 {REF} {Length: 1963} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=18.6]} {Smed: dd_Smed_v6_43697_0_1, dd_Smed_v6_43697_0_1, [Score=84.3, Expect=4e-19]} {RNA1310_96760.2} {RNA815_54296}
2. MligTC455_25278 23 0.48 Mlig455_040680

Neo: -

Age: Down-Up-Down

 RPGR 1 - - 1.000 - - - Mlig455_040680 {REF} {Length: 4301} {Pfam: Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=192.8]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=127.5]; Family of unknown function (DUF6476) [PF20082.1, score=19.4]} {Human: ENSG00000156313, RPGR, retinitis pigmentosa GTPase regulator, [RH, Score=229, Expect=7e-66]} {Mouse: ENSMUSG00000031174, Rpgr, retinitis pigmentosa GTPase regulator, [Score=235, Expect=2e-64]} {Dmel: FBgn0035207, Sherpa, SUMO-related HECT domain and RCC repeat protein for Toll pathway activation, [Score=143, Expect=1e-34]} {Celegans: WBGene00021685, herc-1, HECT and RCC domain E3 ubiquitin ligase, [Score=107, Expect=1e-23]} {Smed: dd_Smed_v6_2716_1_1, dd_Smed_v6_2716_1_1, [RH, Score=219, Expect=1e-61]} {RNA1509_14742} {RNA1310_2996} {RNA815_7565}
3. MligTC455_44658 12 0.25 Mlig455_054317

Neo: -

Age: -

 1 - - 1.000 - - - Mlig455_054317 {REF} {Length: 2882} {Pfam: PDZ domain [PF17820.3, score=33.0]; PDZ domain [PF00595.26, score=32.9]} {RNA1310_148560}
4. MligTC455_13202 175 3.65 Mlig455_066195, Mlig455_068828

Neo: -

Age: Down-Down-Up

 MYO19 0.99 - - 0.990 - - -

Mlig455_066195 {REF} {Length: 3624} {TRANSSPLICED} {Pfam: Myosin head (motor domain) [PF00063.23, score=293.0]} {Human: ENSG00000278372, MYO19, myosin XIX, [Score=248, Expect=9e-69]; ENSG00000278259, MYO19, myosin XIX, [Score=248, Expect=9e-69]} {Mouse: ENSMUSG00000020527, Myo19, myosin XIX, [Score=241, Expect=2e-66]} {Dmel: FBgn0000317, ck, crinkled, [Score=221, Expect=3e-59]} {Celegans: WBGene00002035, hum-1, Heavy chain, Unconventional Myosin, [Score=211, Expect=3e-56]} {Smed: dd_Smed_v6_5823_0_1, dd_Smed_v6_5823_0_1, [Score=211, Expect=3e-56]} {RNA1509_37477} {RNA1310_5400.2} {RNA815_4327}

Mlig455_068828 {REF} {Length: 3375} {TRANSSPLICED} {Pfam: Myosin head (motor domain) [PF00063.23, score=322.9]} {Human: ENSG00000278259, MYO19, myosin XIX, [Score=263, Expect=8e-74]; ENSG00000278372, MYO19, myosin XIX, [Score=263, Expect=8e-74]} {Mouse: ENSMUSG00000020527, Myo19, myosin XIX, [Score=255, Expect=3e-71]} {Dmel: FBgn0000317, ck, crinkled, [Score=236, Expect=7e-64]} {Celegans: WBGene00009730, myo-6, MYOsin heavy chain structural genes, [Score=228, Expect=1e-61]} {Smed: dd_Smed_v6_5823_0_1, dd_Smed_v6_5823_0_1, [Score=226, Expect=9e-61]} {RNA1509_37477} {RNA1310_5400.2} {RNA815_4327}
5. MligTC455_18425 65 1.35 Mlig455_070253

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.582

 0.99 - - 0.990 - - - Mlig455_070253 {REF} {Length: 1630} {RNA1509_32615} {RNA1310_20631.1} {RNA815_8350}
6. MligTC455_40406 59 1.23 Mlig455_062481

Neo: -

Age: -

 CHRNA9 0.969 - - 0.969 - - - Mlig455_062481 {REF} {Length: 3660} {TRANSSPLICED} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=153.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=111.8]} {Human: ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=205, Expect=2e-59]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=201, Expect=1e-57]; ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=201, Expect=7e-58]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=201, Expect=2e-57]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=201, Expect=1e-57]; ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=199, Expect=2e-57]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=199, Expect=4e-57]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=196, Expect=1e-54]} {Mouse: ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=209, Expect=4e-61]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=207, Expect=7e-60]; ENSMUSG00000035594, Chrna5, cholinergic receptor, nicotinic, alpha polypeptide 5, [Score=200, Expect=6e-58]} {Dmel: FBgn0032151, nAChRalpha6, nicotinic Acetylcholine Receptor alpha6, [Score=202, Expect=2e-58]} {Celegans: WBGene00000050, acr-11, AcetylCholine Receptor, [Score=192, Expect=7e-55]} {Smed: dd_Smed_v6_9503_0_1, dd_Smed_v6_9503_0_1, [RH, Score=449, Expect=5e-153]} {RNA1509_18288} {RNA1310_3728, RNA1509_18288} {RNA1509_18288, RNA815_3826.3}
7. MligTC455_27468 40 0.84 Mlig455_013749

Neo: -

Age: -

 LNPEP 0.968 - - 0.968 - - - Mlig455_013749 {REF} {Length: 4937} {Pfam: Peptidase family M1 domain [PF01433.22, score=195.1]; Peptidase M1 N-terminal domain [PF17900.3, score=121.7]} {Human: ENSG00000113441, LNPEP, leucyl and cystinyl aminopeptidase, [Score=289, Expect=5e-85]; ENSG00000172901, LVRN, laeverin, [Score=282, Expect=1e-82]; ENSG00000166825, ANPEP, alanyl aminopeptidase, membrane, [Score=277, Expect=4e-81]; ENSG00000164307, ERAP1, endoplasmic reticulum aminopeptidase 1, [Score=275, Expect=3e-80]} {Mouse: ENSMUSG00000023845, Lnpep, leucyl/cystinyl aminopeptidase, [Score=286, Expect=2e-84]} {Dmel: FBgn0052473, CG32473, [Score=293, Expect=9e-88]} {Celegans: WBGene00003914, pam-1, Aminopeptidase, [Score=251, Expect=2e-72]} {Smed: dd_Smed_v6_6470_0_1, dd_Smed_v6_6470_0_1, [Score=328, Expect=5e-100]} {RNA1509_14706} {RNA1310_6661.1} {RNA815_1900.2}
8. MligTC455_33501 123 2.57 Mlig455_003879, Mlig455_052212

Neo: -

Age: -

 0.967 - - 0.967 - - -

Mlig455_003879 {REF} {Length: 220} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49031} {RNA1310_97783} {RNA815_54937}

Mlig455_052212 {REF} {Length: 1790} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49031} {RNA1310_97783} {RNA815_54937}
9. MligTC455_53500 32 0.66 Mlig455_009118

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_009118 {REF} {Length: 2320} {RNA1509_16338, RNA1509_3633} {RNA1310_36186, RNA1509_16338} {RNA1509_16338, RNA815_22645}
10. MligTC455_49029 15 0.31 Mlig455_028155

Neo: -

Age: -

 SYT3 0.959 - - 0.959 - - - Mlig455_028155 {REF} {Length: 3284} {Pfam: C2 domain [PF00168.32, score=61.3]} {Human: ENSG00000213023, SYT3, synaptotagmin 3, [Score=75.9, Expect=2e-14]} {Mouse: ENSMUSG00000030731, Syt3, synaptotagmin III, [Score=74.7, Expect=3e-14]} {Dmel: FBgn0004242, Syt1, Synaptotagmin 1, [Score=59.3, Expect=2e-09]} {Celegans: WBGene00004921, snt-1, Synaptotagmin-1, [Score=59.7, Expect=1e-09]} {Smed: dd_Smed_v6_25279_0_1, dd_Smed_v6_25279_0_1, [Score=87.8, Expect=3e-19]} {RNA1310_53959} {RNA815_36451}
11. MligTC455_09874 31 0.65 Mlig455_045071

Neo: -

Age: -

 DOC2A 0.956 - - 0.956 - - - Mlig455_045071 {REF} {Length: 1760} {Pfam: C2 domain [PF00168.32, score=55.9]} {Human: ENSG00000149927, DOC2A, double C2 domain alpha, [Score=55.8, Expect=7e-08]} {Mouse: ENSMUSG00000052301, Doc2a, double C2, alpha, [Score=55.5, Expect=7e-08]} {Celegans: WBGene00004923, snt-3, SyNapTotagmin, [Score=70.5, Expect=2e-13]} {Smed: dd_Smed_v6_16731_0_1, dd_Smed_v6_16731_0_1, [Score=112, Expect=7e-27]} {RNA1310_36283} {RNA815_40844}
12. MligTC455_31142 39 0.8 Mlig455_058295

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_058295 {REF} {Length: 1338} {Pfam: Globin [PF00042.24, score=62.9]} {RNA1310_108223} {RNA815_64036}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA