M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45017

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45017 3247 67.64 Mlig455_021759, Mlig455_021836

Neo: -

Age: -

Mlig455_021759 {REF} {Length: 1045} {RNA1509_16556, RNA1509_22839} {RNA1310_36070, RNA1509_16556, RNA1509_22839} {RNA1509_16556, RNA1509_22839, RNA815_17024}

Mlig455_021836 {REF} {Length: 1228} {RNA1509_16556} {RNA1310_36070} {RNA815_17024}

Cumulative graph for MligTC455_45017

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.413 6.274 0.00325 0.18407
RegionR2 1.235 6.274 0.00745 0.08362
RegionR3 0.459 6.274 0.24452 0.78746
RegionR4 0.033 6.274 0.94230 1.00000
RegionR5 -0.331 6.274 0.41259 0.77195
RegionR6 0.366 6.274 0.35650 0.94086
RegionR7 0.82 6.274 0.03396 0.35111
RegionR8 -0.171 6.274 0.71818 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.12 6.274 0.29136 0.98947
RegenerationR2 -0.87 6.274 0.07749 0.44979
RegenerationR3 -0.335 6.274 0.50845 0.86021
RegenerationR4 -0.266 6.274 0.60815 0.91664
RegenerationR5 0.018 6.274 0.97108 1.00000
RegenerationR6 -0.988 6.274 0.05364 0.29021
RegenerationBL -1.254 6.274 0.01128 0.10810
RegenerationTP 0.094 6.274 0.85128 1.00000


Genes with expression patterns similar to MligTC455_45017

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45017 3247 67.64 Mlig455_021759, Mlig455_021836

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_021759 {REF} {Length: 1045} {RNA1509_16556, RNA1509_22839} {RNA1310_36070, RNA1509_16556, RNA1509_22839} {RNA1509_16556, RNA1509_22839, RNA815_17024}

Mlig455_021836 {REF} {Length: 1228} {RNA1509_16556} {RNA1310_36070} {RNA815_17024}
2. MligTC455_48594 940 19.57 Mlig455_017682

Neo: -

Age: -

Region-enriched R2: 2.296/0.00015
Region-enriched R7: 1.307/0.04045

Regeneration-downregulated BL: -7.035

Regeneration-depleted BL: -7.035

 LIMA1 2.385 - 0.732 - 0.951 - 0.702 Mlig455_017682 {REF} {Length: 2023} {Pfam: LIM domain [PF00412.24, score=52.8]} {Human: ENSG00000050405, LIMA1, LIM domain and actin binding 1, [Score=73.9, Expect=1e-16]} {Mouse: ENSMUSG00000023022, Lima1, LIM domain and actin binding 1, [Score=72.0, Expect=3e-16]; ENSMUSG00000030470, Csrp3, cysteine and glycine-rich protein 3, [Score=69.7, Expect=4e-16]} {Dmel: FBgn0259209, Mlp60A, Muscle LIM protein at 60A, [Score=60.1, Expect=1e-13]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=68.6, Expect=9e-17]} {Smed: dd_Smed_v6_537_0_1, dd_Smed_v6_537_0_1, [RH, Score=110, Expect=6e-34]} {RNA1509_13529, RNA1509_3532} {RNA1310_18801.1, RNA1509_13529, RNA1509_3532} {RNA1509_13529, RNA1509_3532, RNA815_9444.1}
3. MligTC455_52641 3066 63.89 Mlig455_010543, Mlig455_061833

Neo: -

Age: logFC(26M/2M)=0.765

Region-enriched R7: 1.955/0.00028

 MCFD2 0.96 - - - 0.960 - -

Mlig455_010543 {REF} {Length: 1820} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=43.9]; EF-hand domain [PF13405.8, score=35.7]; EF hand [PF00036.34, score=31.2]; EF hand [PF13202.8, score=21.2]; EF-hand domain pair [PF13833.8, score=18.6]} {Human: ENSG00000180398, MCFD2, multiple coagulation factor deficiency 2, [RH, Score=84.0, Expect=6e-21]} {Mouse: ENSMUSG00000024150, Mcfd2, multiple coagulation factor deficiency 2, [RH, Score=80.9, Expect=4e-20]} {Dmel: FBgn0038829, CG17271, [RH, Score=80.1, Expect=1e-18]} {Celegans: WBGene00010075, F55A11.1, [RH, Score=68.2, Expect=6e-15]} {RNA1509_4427} {RNA1310_15266} {RNA815_5930}

Mlig455_061833 {REF} {Length: 1826} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=43.9]; EF-hand domain [PF13405.8, score=35.7]; EF hand [PF00036.34, score=31.2]; EF hand [PF13202.8, score=21.2]; EF-hand domain pair [PF13833.8, score=18.6]} {Human: ENSG00000180398, MCFD2, multiple coagulation factor deficiency 2, [RH, Score=84.0, Expect=6e-21]} {Mouse: ENSMUSG00000024150, Mcfd2, multiple coagulation factor deficiency 2, [RH, Score=80.9, Expect=4e-20]} {Dmel: FBgn0038829, CG17271, [RH, Score=80.1, Expect=1e-18]} {Celegans: WBGene00010075, F55A11.1, [RH, Score=68.2, Expect=6e-15]} {RNA1509_4427} {RNA1310_15266, RNA1509_4427} {RNA1509_4427, RNA815_5930}
4. MligTC455_44162 653 13.6 Mlig455_031097

Neo: -

Age: -

 TTC36 0.955 - - - - - 0.955 Mlig455_031097 {REF} {Length: 1569} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=35.5]; Tetratricopeptide repeat [PF00515.30, score=30.7]; Tetratricopeptide repeat [PF13371.8, score=29.6]; Tetratricopeptide repeat [PF13424.8, score=24.9]; Tetratricopeptide repeat [PF13428.8, score=19.3]} {Human: ENSG00000172425, TTC36, tetratricopeptide repeat domain 36, [RH, Score=166, Expect=1e-51]} {Mouse: ENSMUSG00000039438, Ttc36, tetratricopeptide repeat domain 36, [RH, Score=162, Expect=2e-50]} {Dmel: FBgn0036359, CG14105, [RH, Score=109, Expect=5e-30]} {Celegans: WBGene00009947, F52H3.5, Tetratricopeptide repeat protein 36 homolog, [RH, Score=122, Expect=3e-35]} {Smed: dd_Smed_v6_1962_0_2, dd_Smed_v6_1962_0_2, [RH, Score=126, Expect=7e-37]} {RNA1509_43044} {RNA1310_25628.1, RNA1509_43044} {RNA1509_43044, RNA815_15617}
5. MligTC455_05283 200 4.17 Mlig455_034021, Mlig455_060399

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.841

Region-enriched R7: 2.636/0.00077

Regeneration-downregulated BL: -7.376

Regeneration-depleted BL: -7.376

 0.953 - - - 0.953 - -

Mlig455_034021 {REF} {Length: 1260} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=63.7]} {RNA1310_41325} {RNA815_53338}

Mlig455_060399 {REF} {Length: 2102} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=63.8]} {RNA1509_57769} {RNA1310_41325} {RNA815_53338}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA