M. lignano Tomo-Seq
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Results for MligTC455_44162

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44162 653 13.60 Mlig455_031097

Neo: -

Age: -

 TTC36 Mlig455_031097 {REF} {Length: 1569} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=35.5]; Tetratricopeptide repeat [PF00515.30, score=30.7]; Tetratricopeptide repeat [PF13371.8, score=29.6]; Tetratricopeptide repeat [PF13424.8, score=24.9]; Tetratricopeptide repeat [PF13428.8, score=19.3]} {Human: ENSG00000172425, TTC36, tetratricopeptide repeat domain 36, [RH, Score=166, Expect=1e-51]} {Mouse: ENSMUSG00000039438, Ttc36, tetratricopeptide repeat domain 36, [RH, Score=162, Expect=2e-50]} {Dmel: FBgn0036359, CG14105, [RH, Score=109, Expect=5e-30]} {Celegans: WBGene00009947, F52H3.5, Tetratricopeptide repeat protein 36 homolog, [RH, Score=122, Expect=3e-35]} {Smed: dd_Smed_v6_1962_0_2, dd_Smed_v6_1962_0_2, [RH, Score=126, Expect=7e-37]} {RNA1509_43044} {RNA1310_25628.1, RNA1509_43044} {RNA1509_43044, RNA815_15617}

Cumulative graph for MligTC455_44162

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.104 4.126 0.92945 1.00000
RegionR2 -0.765 4.126 0.12725 0.44254
RegionR3 0.519 4.126 0.16346 0.68361
RegionR4 0.72 4.126 0.14681 0.39399
RegionR5 0.401 4.126 0.25814 0.57778
RegionR6 0.115 4.126 0.76698 1.00000
RegionR7 -0.631 4.126 0.21399 0.83026
RegionR8 -0.256 4.126 0.63656 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.289 4.126 0.16973 0.91293
RegenerationR2 0.378 4.126 0.37548 0.79866
RegenerationR3 -0.408 4.126 0.36909 0.78341
RegenerationR4 0.106 4.126 0.83196 0.99786
RegenerationR5 -0.171 4.126 0.69116 0.94828
RegenerationR6 -0.022 4.126 0.96477 1.00000
RegenerationBL -0.968 4.126 0.14855 0.46051
RegenerationTP 0.054 4.126 0.92523 1.00000


Genes with expression patterns similar to MligTC455_44162

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44162 653 13.6 Mlig455_031097

Neo: -

Age: -

 TTC36 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_031097 {REF} {Length: 1569} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=35.5]; Tetratricopeptide repeat [PF00515.30, score=30.7]; Tetratricopeptide repeat [PF13371.8, score=29.6]; Tetratricopeptide repeat [PF13424.8, score=24.9]; Tetratricopeptide repeat [PF13428.8, score=19.3]} {Human: ENSG00000172425, TTC36, tetratricopeptide repeat domain 36, [RH, Score=166, Expect=1e-51]} {Mouse: ENSMUSG00000039438, Ttc36, tetratricopeptide repeat domain 36, [RH, Score=162, Expect=2e-50]} {Dmel: FBgn0036359, CG14105, [RH, Score=109, Expect=5e-30]} {Celegans: WBGene00009947, F52H3.5, Tetratricopeptide repeat protein 36 homolog, [RH, Score=122, Expect=3e-35]} {Smed: dd_Smed_v6_1962_0_2, dd_Smed_v6_1962_0_2, [RH, Score=126, Expect=7e-37]} {RNA1509_43044} {RNA1310_25628.1, RNA1509_43044} {RNA1509_43044, RNA815_15617}
2. MligTC455_42260 1284 26.76 Mlig455_018975

Neo: -

Age: Down-Down-Up

 GSR 0.964 - - - 0.964 - - Mlig455_018975 {REF} {Length: 2860} {TRANSSPLICED} {Pfam: Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=217.2]; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain [PF02852.24, score=93.5]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=85.4]; Pyridine nucleotide-disulphide oxidoreductase [PF13738.8, score=51.1]; FAD dependent oxidoreductase [PF12831.9, score=29.2]; Glucose inhibited division protein A [PF01134.24, score=26.7]; FAD binding domain [PF00890.26, score=25.5]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=24.9]; FAD dependent oxidoreductase [PF01266.26, score=22.6]; HI0933-like protein [PF03486.16, score=20.6]; Putative NAD(P)-binding [PF13241.8, score=20.6]; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [PF02826.21, score=20.0]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=19.9]; FAD binding domain [PF01494.21, score=19.3]} {Human: ENSG00000104687, GSR, glutathione-disulfide reductase, [Score=442, Expect=1e-151]} {Mouse: ENSMUSG00000031584, Gsr, glutathione reductase, [Score=441, Expect=7e-152]} {Dmel: FBgn0020653, Trxr-1, Thioredoxin reductase-1, [Score=238, Expect=5e-73]} {Celegans: WBGene00008117, gsr-1, Glutathione reductase, mitochondrial, [Score=382, Expect=3e-129]} {Smed: dd_Smed_v6_8743_0_1, dd_Smed_v6_8743_0_1, [Score=456, Expect=1e-158]} {RNA1509_18628} {RNA1310_18856} {RNA815_6497}
3. MligTC455_42259 1319 27.48 Mlig455_018802

Neo: -

Age: -

 GSR 0.962 - - - 0.962 - - Mlig455_018802 {REF} {Length: 2856} {TRANSSPLICED} {Pfam: Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=217.0]; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain [PF02852.24, score=104.9]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=85.2]; Pyridine nucleotide-disulphide oxidoreductase [PF13738.8, score=50.9]; FAD dependent oxidoreductase [PF12831.9, score=29.1]; Glucose inhibited division protein A [PF01134.24, score=26.5]; FAD binding domain [PF00890.26, score=25.3]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=24.7]; FAD dependent oxidoreductase [PF01266.26, score=22.8]; HI0933-like protein [PF03486.16, score=20.5]; Putative NAD(P)-binding [PF13241.8, score=20.5]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=19.9]; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [PF02826.21, score=19.8]; FAD binding domain [PF01494.21, score=19.0]} {Human: ENSG00000104687, GSR, glutathione-disulfide reductase, [RH, Score=479, Expect=4e-166]} {Mouse: ENSMUSG00000031584, Gsr, glutathione reductase, [RH, Score=479, Expect=1e-166]} {Dmel: FBgn0020653, Trxr-1, Thioredoxin reductase-1, [Score=260, Expect=2e-81]} {Celegans: WBGene00008117, gsr-1, Glutathione reductase, mitochondrial, [RH, Score=417, Expect=9e-143]} {Smed: dd_Smed_v6_8743_0_1, dd_Smed_v6_8743_0_1, [RH, Score=498, Expect=1e-174]} {RNA1509_12601, RNA1509_14658, RNA1509_18628, RNA1509_34661} {RNA1310_18856, RNA1509_12601, RNA1509_14658, RNA1509_34661} {RNA1509_12601, RNA1509_14658, RNA1509_34661, RNA815_6497}
4. MligTC455_14788 114 2.37 Mlig455_006986, Mlig455_017984

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_006986 {REF} {Length: 1491} {RNA1509_19241} {RNA1310_18201.1}

Mlig455_017984 {REF} {Length: 1491} {RNA1509_19241} {RNA1310_18201.1}
5. MligTC455_31528 694 14.45 Mlig455_050895, Mlig455_067822

Neo: -

Age: -

 TREX2 0.956 - - - 0.956 - -

Mlig455_050895 {REF} {Length: 6043} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.2]; WD domain, G-beta repeat [PF00400.34, score=27.0]; zinc-RING finger domain [PF14634.8, score=25.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=23.2]; RING-type zinc-finger [PF13445.8, score=22.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=21.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=19.0]; Prokaryotic RING finger family 4 [PF14447.8, score=18.8]} {Human: ENSG00000183479, TREX2, three prime repair exonuclease 2, [RH, Score=103, Expect=1e-23]} {Mouse: ENSMUSG00000049734, Trex1, three prime repair exonuclease 1, [RH, Score=108, Expect=2e-25]} {Dmel: FBgn0031484, CG3165, [RH, Score=84.3, Expect=5e-17]} {RNA1509_53404} {RNA1310_9394} {RNA815_9986}

Mlig455_067822 {REF} {Length: 3371} {TRANSSPLICED} {Pfam: Exonuclease [PF00929.26, score=23.1]} {Human: ENSG00000183479, TREX2, three prime repair exonuclease 2, [RH, Score=99.8, Expect=9e-24]} {Mouse: ENSMUSG00000049734, Trex1, three prime repair exonuclease 1, [RH, Score=104, Expect=3e-25]; ENSMUSG00000031372, Trex2, three prime repair exonuclease 2, [RH, Score=100, Expect=2e-24]} {Dmel: FBgn0031484, CG3165, [RH, Score=85.5, Expect=3e-18]} {RNA1509_43862} {RNA1310_27101} {RNA815_5644.1}
6. MligTC455_45017 3247 67.64 Mlig455_021759, Mlig455_021836

Neo: -

Age: -

 0.955 - - - - - 0.955

Mlig455_021759 {REF} {Length: 1045} {RNA1509_16556, RNA1509_22839} {RNA1310_36070, RNA1509_16556, RNA1509_22839} {RNA1509_16556, RNA1509_22839, RNA815_17024}

Mlig455_021836 {REF} {Length: 1228} {RNA1509_16556} {RNA1310_36070} {RNA815_17024}
7. MligTC455_53666 1759 36.64 Mlig455_040811

Neo: -

Age: -

 ACAT1 0.951 - - - 0.951 - - Mlig455_040811 {REF} {Length: 4843} {TRANSSPLICED} {Pfam: Mpp10 protein [PF04006.14, score=422.2]; Thiolase, N-terminal domain [PF00108.25, score=320.7]; Thiolase, C-terminal domain [PF02803.20, score=134.6]; Family of unknown function (DUF5447) [PF17525.4, score=28.0]; Beta-ketoacyl synthase, N-terminal domain [PF00109.28, score=21.5]} {Human: ENSG00000075239, ACAT1, acetyl-CoA acetyltransferase 1, [RH, Score=408, Expect=2e-129]} {Mouse: ENSMUSG00000032047, Acat1, acetyl-Coenzyme A acetyltransferase 1, [RH, Score=407, Expect=4e-129]} {Dmel: FBgn0029969, CG10932, [RH, Score=434, Expect=2e-139]} {Celegans: WBGene00002183, kat-1, Acetyl-CoA acetyltransferase homolog, mitochondrial, [RH, Score=432, Expect=5e-139]} {Smed: dd_Smed_v6_1377_0_1, dd_Smed_v6_1377_0_1, [RH, Score=452, Expect=2e-146]} {RNA1509_7248} {RNA1310_18235, RNA1509_7248} {RNA1509_7248, RNA815_10304}

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