M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45163

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45163 258 5.37 Mlig455_005301

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.479

 OTOP3 Mlig455_005301 {REF} {Length: 3027} {TRANSSPLICED} {Pfam: Otopetrin [PF03189.15, score=236.5]} {Human: ENSG00000182938, OTOP3, otopetrin 3, [RH, Score=67.4, Expect=5e-11]} {Mouse: ENSMUSG00000018862, Otop3, otopetrin 3, [RH, Score=66.6, Expect=6e-11]} {Dmel: FBgn0259150, CG42265, [Score=188, Expect=1e-49]} {Celegans: WBGene00017449, otpl-3, OToPetrin-Like, [RH, Score=139, Expect=8e-35]} {Smed: dd_Smed_v6_13612_0_4, dd_Smed_v6_13612_0_4, [RH, Score=318, Expect=2e-99]} {RNA1509_58676, RNA1509_717} {RNA1310_7130.2, RNA1509_58676} {RNA1509_58676, RNA815_6393}

Cumulative graph for MligTC455_45163

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.489 2.89 0.69536 1.00000
RegionR2 -0.059 2.89 0.93318 1.00000
RegionR3 -0.018 2.89 0.97917 1.00000
RegionR4 0.749 2.89 0.21643 0.50367
RegionR5 -1.293 2.89 0.02489 0.11327
RegionR6 -0.343 2.89 0.57923 1.00000
RegionR7 0.276 2.89 0.70252 1.00000
RegionR8 0.201 2.89 0.81944 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.613 2.89 0.13353 0.86833
RegenerationR2 0.398 2.89 0.53125 0.88502
RegenerationR3 0.607 2.89 0.36942 0.78356
RegenerationR4 -0.36 2.89 0.59771 0.91256
RegenerationR5 0.936 2.89 0.16854 0.59553
RegenerationR6 0.143 2.89 0.84582 0.99826
RegenerationBL -0.228 2.89 0.78669 1.00000
RegenerationTP -0.312 2.89 0.72064 1.00000


Genes with expression patterns similar to MligTC455_45163

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45163 258 5.37 Mlig455_005301

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.479

 OTOP3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_005301 {REF} {Length: 3027} {TRANSSPLICED} {Pfam: Otopetrin [PF03189.15, score=236.5]} {Human: ENSG00000182938, OTOP3, otopetrin 3, [RH, Score=67.4, Expect=5e-11]} {Mouse: ENSMUSG00000018862, Otop3, otopetrin 3, [RH, Score=66.6, Expect=6e-11]} {Dmel: FBgn0259150, CG42265, [Score=188, Expect=1e-49]} {Celegans: WBGene00017449, otpl-3, OToPetrin-Like, [RH, Score=139, Expect=8e-35]} {Smed: dd_Smed_v6_13612_0_4, dd_Smed_v6_13612_0_4, [RH, Score=318, Expect=2e-99]} {RNA1509_58676, RNA1509_717} {RNA1310_7130.2, RNA1509_58676} {RNA1509_58676, RNA815_6393}
2. MligTC455_45081 317 6.6 Mlig455_018497

Neo: -

Age: -

Region-enriched R4: 2.407/0.01304

 PQLC1 0.952 - - - - - 0.952 Mlig455_018497 {REF} {Length: 2325} {Pfam: PQ loop repeat [PF04193.16, score=74.2]} {Human: ENSG00000122490, PQLC1, PQ loop repeat containing 1, [Score=197, Expect=7e-63]} {Mouse: ENSMUSG00000034006, Pqlc1, PQ loop repeat containing 1, [Score=192, Expect=5e-61]} {Dmel: FBgn0031897, CG13784, [Score=206, Expect=1e-66]} {Celegans: WBGene00011827, T19A6.1, [Score=168, Expect=1e-51]} {Smed: dd_Smed_v6_6419_0_1, dd_Smed_v6_6419_0_1, [Score=179, Expect=9e-57]} {RNA1509_32019, RNA1509_47747} {RNA1310_8439, RNA1509_47747} {RNA1509_47747, RNA815_18050}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA