M. lignano Tomo-Seq
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Results for MligTC455_45372

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45372 248 5.16 Mlig455_053718

Neo: -

Age: Down-Up-Down

 GATAD1 Mlig455_053718 {REF} {Length: 1241} {TRANSSPLICED} {Human: ENSG00000157259, GATAD1, GATA zinc finger domain containing 1, [RH, Score=97.4, Expect=3e-23]} {Mouse: ENSMUSG00000007415, Gatad1, GATA zinc finger domain containing 1, [RH, Score=97.8, Expect=2e-23]} {Dmel: FBgn0025634, CG13367, [RH, Score=72.0, Expect=6e-14]} {RNA1509_36175} {RNA1310_26687, RNA1509_36175} {RNA1509_36175, RNA815_32643}

Cumulative graph for MligTC455_45372

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.573 2.896 0.51322 1.00000
RegionR2 -1.092 2.896 0.99024 1.00000
RegionR3 0.247 2.896 0.74893 1.00000
RegionR4 1.102 2.896 0.28666 0.59609
RegionR5 0.346 2.896 0.68465 1.00000
RegionR6 0.52 2.896 0.58599 1.00000
RegionR7 2.383 2.896 0.00663 0.13352
RegionR8 0.067 2.896 0.86006 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.946 2.896 0.33007 1.00000
RegenerationR2 1.458 2.896 0.01633 0.20994
RegenerationR3 -0.439 2.896 0.51007 0.86133
RegenerationR4 0.406 2.896 0.55349 0.89380
RegenerationR5 0.736 2.896 0.19557 0.62707
RegenerationR6 0.325 2.896 0.59972 0.86859
RegenerationBL 0.328 2.896 0.68379 1.00000
RegenerationTP -1.651 2.896 0.17461 0.60816


Genes with expression patterns similar to MligTC455_45372

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45372 248 5.16 Mlig455_053718

Neo: -

Age: Down-Up-Down

 GATAD1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053718 {REF} {Length: 1241} {TRANSSPLICED} {Human: ENSG00000157259, GATAD1, GATA zinc finger domain containing 1, [RH, Score=97.4, Expect=3e-23]} {Mouse: ENSMUSG00000007415, Gatad1, GATA zinc finger domain containing 1, [RH, Score=97.8, Expect=2e-23]} {Dmel: FBgn0025634, CG13367, [RH, Score=72.0, Expect=6e-14]} {RNA1509_36175} {RNA1310_26687, RNA1509_36175} {RNA1509_36175, RNA815_32643}
2. MligTC455_46950 1183 24.65 Mlig455_030580

Neo: Neoblast, stringent

Age: Down-Up-Down

 DPY30 0.96 - - - 0.960 - - Mlig455_030580 {REF} {Length: 1041} {Pfam: Dpy-30 motif [PF05186.15, score=70.9]} {Human: ENSG00000162961, DPY30, dpy-30, histone methyltransferase complex regulatory subunit, [RH, Score=91.7, Expect=2e-24]} {Mouse: ENSMUSG00000024067, Dpy30, dpy-30, histone methyltransferase complex regulatory subunit, [Score=92.0, Expect=9e-25]} {Dmel: FBgn0035491, Dpy-30L2, Dpy-30-like 2, [RH, Score=70.9, Expect=9e-17]} {Celegans: WBGene00001088, dpy-30, Dosage compensation protein dpy-30, [RH, Score=81.6, Expect=9e-21]} {Smed: dd_Smed_v6_9103_0_1, dd_Smed_v6_9103_0_1, [RH, Score=80.5, Expect=2e-20]} {RNA1509_7134} {RNA1310_35941.1} {RNA815_41374}
3. MligTC455_16763 913 19.02 Mlig455_029100, Mlig455_029120

Neo: -

Age: -

 GPHN 0.956 - - - 0.956 - -

Mlig455_029100 {REF} {Length: 3025} {Pfam: Probable molybdopterin binding domain [PF00994.26, score=185.8]; MoeA N-terminal region (domain I and II) [PF03453.19, score=143.0]; MoeA C-terminal region (domain IV) [PF03454.17, score=32.7]} {Human: ENSG00000171723, GPHN, gephyrin, [RH, Score=456, Expect=4e-151]} {Mouse: ENSMUSG00000047454, Gphn, gephyrin, [RH, Score=408, Expect=3e-132]} {Dmel: FBgn0000316, cin, cinnamon, [RH, Score=368, Expect=6e-119]} {Celegans: WBGene00003384, moc-1, MOlybdenum Cofactor biosynthesis, [RH, Score=235, Expect=2e-70]} {Smed: dd_Smed_v6_10498_0_1, dd_Smed_v6_10498_0_1, [RH, Score=457, Expect=9e-154]} {RNA1509_48127, RNA1509_57639} {RNA1310_8350.1, RNA1509_48127, RNA1509_57639} {RNA1509_48127, RNA1509_57639, RNA815_2187.1}

Mlig455_029120 {REF} {Length: 3023} {Pfam: Probable molybdopterin binding domain [PF00994.26, score=185.8]; MoeA N-terminal region (domain I and II) [PF03453.19, score=143.0]; MoeA C-terminal region (domain IV) [PF03454.17, score=32.7]} {Human: ENSG00000171723, GPHN, gephyrin, [RH, Score=456, Expect=4e-151]} {Mouse: ENSMUSG00000047454, Gphn, gephyrin, [RH, Score=408, Expect=3e-132]} {Dmel: FBgn0000316, cin, cinnamon, [RH, Score=368, Expect=6e-119]} {Celegans: WBGene00003384, moc-1, MOlybdenum Cofactor biosynthesis, [RH, Score=235, Expect=2e-70]} {Smed: dd_Smed_v6_10498_0_1, dd_Smed_v6_10498_0_1, [RH, Score=457, Expect=9e-154]} {RNA1509_48127} {RNA1310_8350.1} {RNA815_2187.1}
4. MligTC455_53438 341 7.11 Mlig455_031236

Neo: Int S/G2/M

Age: -

 UBAC1 0.956 - - - 0.956 - - Mlig455_031236 {REF} {Length: 2656} {TRANSSPLICED} {Pfam: UBA/TS-N domain [PF00627.33, score=47.6]} {Human: ENSG00000130560, UBAC1, UBA domain containing 1, [RH, Score=117, Expect=2e-28]} {Mouse: ENSMUSG00000036352, Ubac1, ubiquitin associated domain containing 1, [RH, Score=119, Expect=3e-29]} {Smed: dd_Smed_v6_8499_0_2, dd_Smed_v6_8499_0_2, [RH, Score=139, Expect=8e-37]} {RNA1509_12437} {RNA1310_10887} {RNA815_5171.1}
5. MligTC455_08565 49 1.03 Mlig455_032295

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=1.719

 HPGD 0.95 - - - 0.950 - - Mlig455_032295 {REF} {Length: 1065} {Pfam: short chain dehydrogenase [PF00106.27, score=98.2]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=70.9]; NAD dependent epimerase/dehydratase family [PF01370.23, score=32.2]; KR domain [PF08659.12, score=30.5]; GDP-mannose 4,6 dehydratase [PF16363.7, score=24.3]; Polysaccharide biosynthesis protein [PF02719.17, score=18.8]} {Human: ENSG00000164120, HPGD, 15-hydroxyprostaglandin dehydrogenase, [Score=121, Expect=4e-33]} {Mouse: ENSMUSG00000031613, Hpgd, hydroxyprostaglandin dehydrogenase 15 (NAD), [Score=117, Expect=6e-32]} {Dmel: FBgn0011693, Pdh, Photoreceptor dehydrogenase, [Score=90.5, Expect=1e-21]} {Celegans: WBGene00000968, dhs-4, DeHydrogenases, Short chain, [Score=69.3, Expect=6e-14]} {Smed: dd_Smed_v6_2263_0_1, dd_Smed_v6_2263_0_1, [Score=53.9, Expect=7e-09]} {RNA1509_33517} {RNA1310_34765.1} {RNA815_8749.1}
6. MligTC455_25776 220 4.59 Mlig455_000479, Mlig455_024867

Neo: -

Age: -

 0.95 - - - 0.950 - -

Mlig455_000479 {REF} {Length: 548} {Pfam: PHD-finger [PF00628.31, score=27.6]} {RNA1310_79789}

Mlig455_024867 {REF} {Length: 1776} {Pfam: PHD-finger [PF00628.31, score=25.7]} {RNA1310_46465}

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