M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45470

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45470 11800 245.83 Mlig455_028075

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=2.087

 CD151 Mlig455_028075 {REF} {Length: 1394} {Pfam: Tetraspanin family [PF00335.22, score=128.3]; Phosphoinositide-interacting protein family [PF15099.8, score=20.1]} {Human: ENSG00000177697, CD151, CD151 molecule (Raph blood group), [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000030342, Cd9, CD9 antigen, [Score=77.8, Expect=1e-16]; ENSMUSG00000028699, Tspan1, tetraspanin 1, [Score=74.3, Expect=2e-15]} {Dmel: FBgn0033629, Tsp47F, Tetraspanin 47F, [Score=63.5, Expect=2e-11]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=60.1, Expect=1e-10]} {Smed: dd_Smed_v6_13639_0_1, dd_Smed_v6_13639_0_1, [Score=135, Expect=3e-38]} {RNA1509_664} {RNA1310_25267.1} {RNA815_10913}

Cumulative graph for MligTC455_45470

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.647 7.971 0.00000 0.00319
RegionR2 0.47 7.971 0.15716 0.49582
RegionR3 0.321 7.971 0.26770 0.81227
RegionR4 0.181 7.971 0.60765 0.91939
RegionR5 -0.221 7.971 0.45855 0.82071
RegionR6 0.429 7.971 0.13671 0.66422
RegionR7 0.767 7.971 0.00646 0.13104
RegionR8 0.7 7.971 0.01990 0.27356

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.345 7.971 0.04043 0.67176
RegenerationR2 0.554 7.971 0.12478 0.54662
RegenerationR3 -0.002 7.971 0.99611 1.00000
RegenerationR4 0.162 7.971 0.67771 0.94494
RegenerationR5 0.323 7.971 0.38317 0.78830
RegenerationR6 -0.094 7.971 0.80067 0.97748
RegenerationBL -0.099 7.971 0.75453 1.00000
RegenerationTP 0.648 7.971 0.05118 0.37049


Genes with expression patterns similar to MligTC455_45470

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45470 11800 245.83 Mlig455_028075

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=2.087

 CD151 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_028075 {REF} {Length: 1394} {Pfam: Tetraspanin family [PF00335.22, score=128.3]; Phosphoinositide-interacting protein family [PF15099.8, score=20.1]} {Human: ENSG00000177697, CD151, CD151 molecule (Raph blood group), [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000030342, Cd9, CD9 antigen, [Score=77.8, Expect=1e-16]; ENSMUSG00000028699, Tspan1, tetraspanin 1, [Score=74.3, Expect=2e-15]} {Dmel: FBgn0033629, Tsp47F, Tetraspanin 47F, [Score=63.5, Expect=2e-11]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=60.1, Expect=1e-10]} {Smed: dd_Smed_v6_13639_0_1, dd_Smed_v6_13639_0_1, [Score=135, Expect=3e-38]} {RNA1509_664} {RNA1310_25267.1} {RNA815_10913}
2. MligTC455_45471 23727 494.31 Mlig455_028137, Mlig455_028271

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.393

 CD151 5.997 1.000 0.999 1.000 0.999 1.000 0.999

Mlig455_028137 {REF} {Length: 1391} {Pfam: Tetraspanin family [PF00335.22, score=128.3]; Phosphoinositide-interacting protein family [PF15099.8, score=21.5]} {Human: ENSG00000177697, CD151, CD151 molecule (Raph blood group), [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000030342, Cd9, CD9 antigen, [Score=77.8, Expect=1e-16]; ENSMUSG00000028699, Tspan1, tetraspanin 1, [Score=74.3, Expect=2e-15]} {Dmel: FBgn0033629, Tsp47F, Tetraspanin 47F, [Score=63.5, Expect=2e-11]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=59.7, Expect=2e-10]} {Smed: dd_Smed_v6_13639_0_1, dd_Smed_v6_13639_0_1, [Score=135, Expect=3e-38]} {RNA1509_36047, RNA1509_5803, RNA1509_664, RNA1509_8534} {RNA1310_25267.1, RNA1509_36047, RNA1509_5803, RNA1509_8534} {RNA1509_36047, RNA1509_5803, RNA1509_8534, RNA815_10913}

Mlig455_028271 {REF} {Length: 1491} {Pfam: Tetraspanin family [PF00335.22, score=128.3]; Phosphoinositide-interacting protein family [PF15099.8, score=21.5]} {Human: ENSG00000177697, CD151, CD151 molecule (Raph blood group), [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000030342, Cd9, CD9 antigen, [Score=77.8, Expect=1e-16]; ENSMUSG00000028699, Tspan1, tetraspanin 1, [Score=74.3, Expect=2e-15]} {Dmel: FBgn0033629, Tsp47F, Tetraspanin 47F, [Score=63.5, Expect=2e-11]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=59.7, Expect=2e-10]} {Smed: dd_Smed_v6_13639_0_1, dd_Smed_v6_13639_0_1, [Score=135, Expect=3e-38]} {RNA1509_664} {RNA1310_25267.1, RNA1509_664} {RNA1509_664, RNA815_10913}
3. MligTC455_42603 8537 177.84 Mlig455_043316

Neo: -

Age: logFC(26M/2M)=-0.377

 3.344 0.737 - 0.972 - 0.911 0.724 Mlig455_043316 {REF} {Length: 1176} {Pfam: Sleepless protein [PF17064.7, score=31.6]} {Dmel: FBgn0033872, CG6329, [RH, Score=53.9, Expect=1e-09]} {Smed: dd_Smed_v6_780_0_1, dd_Smed_v6_780_0_1, [RH, Score=54.7, Expect=4e-10]} {RNA1509_18340, RNA1509_1909} {RNA1310_24118, RNA1509_18340, RNA1509_1909} {RNA1509_18340, RNA1509_1909, RNA815_21128}
4. MligTC455_17150 374 7.79 Mlig455_033799, Mlig455_050240

Neo: -

Age: -

 2.723 - - 0.814 0.958 0.951 -

Mlig455_033799 {REF} {Length: 394} {RNA1509_43209} {RNA1310_49037, RNA1509_43209} {RNA1509_43209, RNA815_24538}

Mlig455_050240 {REF} {Length: 215} {NoTransDecoderORF} {RNA1509_43209} {RNA1310_105303} {RNA815_36442}
5. MligTC455_36206 5330 111.04 Mlig455_049249

Neo: -

Age: Down-Up-Up

 LITAF 2.643 - - 0.906 0.778 0.959 - Mlig455_049249 {REF} {Length: 1080} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=84.8]} {Human: ENSG00000189067, LITAF, lipopolysaccharide induced TNF factor, [Score=79.3, Expect=4e-19]; ENSG00000089486, CDIP1, cell death inducing p53 target 1, [Score=77.8, Expect=6e-19]; ENSG00000274336, CDIP1, cell death inducing p53 target 1, [Score=77.8, Expect=6e-19]} {Mouse: ENSMUSG00000022500, Litaf, LPS-induced TN factor, [Score=85.1, Expect=2e-21]} {Dmel: FBgn0052280, CG32280, [Score=70.9, Expect=2e-16]} {Celegans: WBGene00012549, Y37D8A.8, [Score=52.0, Expect=2e-09]} {Smed: dd_Smed_v6_353_0_1, dd_Smed_v6_353_0_1, [Score=87.8, Expect=2e-23]} {RNA1509_43875, RNA1509_8851} {RNA1310_38083, RNA1509_43875, RNA1509_8851} {RNA1509_43875, RNA1509_8851, RNA815_19137.1}
6. MligTC455_51433 656 13.66 Mlig455_009437

Neo: -

Age: Down-Up-Down

Region-enriched R8: 3.000/0.00819

 2.545 0.743 - - 0.968 0.834 - Mlig455_009437 {REF} {Length: 934} {NoTransDecoderORF} {RNA1509_33891, RNA1509_53830} {RNA1310_38373.1, RNA1509_33891, RNA1509_53830} {RNA1509_33891, RNA1509_53830, RNA815_24975.1}
7. MligTC455_18628 960 20 Mlig455_022736

Neo: -

Age: logFC(26M/2M)=0.412

Region-enriched R2: 3.411/0.00867

 SCUBE2 1.881 - - - 0.977 0.904 - Mlig455_022736 {REF} {Length: 3064} {Pfam: EGF-like domain [PF00008.29, score=27.8]; Subtelomeric Variable Open Reading frame [PF17410.4, score=18.9]} {Human: ENSG00000175356, SCUBE2, signal peptide, CUB domain and EGF like domain containing 2, [Score=51.6, Expect=8e-07]} {RNA1509_57654} {RNA1310_12051.1} {RNA815_5009.1}
8. MligTC455_31500 68794 1433.2 Mlig455_056588

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.608

Region-enriched R8: 1.796/0.00003
Region-enriched R7: 1.515/0.00066

 1.851 - - - 0.979 0.872 - Mlig455_056588 {REF} {Length: 1680} {RNA1509_12033, RNA1509_22590} {RNA1310_32308, RNA1509_22590} {RNA1509_22590, RNA815_5913.2}
9. MligTC455_31501 69489 1447.68 Mlig455_056609

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=0.808

Region-enriched R8: 1.785/0.00008
Region-enriched R7: 1.515/0.00130

 1.846 - - - 0.979 0.867 - Mlig455_056609 {REF} {Length: 1337} {RNA1509_38749, RNA1509_41088} {RNA1310_32308, RNA1509_41088} {RNA1509_41088, RNA815_5913.2}
10. MligTC455_42486 52 1.09 Mlig455_056354

Neo: -

Age: -

 1.838 - - - 0.879 0.959 - Mlig455_056354 {REF} {Length: 1240}
11. MligTC455_49728 9366 195.13 Mlig455_064924, Mlig455_064956

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.287

 1.838 - 0.875 - - - 0.963

Mlig455_064924 {REF} {Length: 804} {Pfam: Universal stress protein family [PF00582.28, score=85.4]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [RH, Score=138, Expect=3e-42]} {RNA1509_11066} {RNA1310_18757.1} {RNA815_5768.1}

Mlig455_064956 {REF} {Length: 1238} {Pfam: Universal stress protein family [PF00582.28, score=85.4]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [RH, Score=138, Expect=3e-42]} {RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633} {RNA1310_18757.1, RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633} {RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633, RNA815_5768.1}
12. MligTC455_14446 614 12.78 Mlig455_033034

Neo: -

Age: Down-Up-Down

 1.811 - - 0.850 - 0.961 - Mlig455_033034 {REF} {Length: 558} {Pfam: Domain of unknown function (DUF4513) [PF14983.8, score=43.1]} {Smed: dd_Smed_v6_9820_0_1, dd_Smed_v6_9820_0_1, [RH, Score=93.6, Expect=5e-26]} {RNA1509_30396} {RNA1310_35608} {RNA815_26600}
13. MligTC455_19194 403 8.39 Mlig455_007445

Neo: -

Age: Up-Down-Down

 BFAR 1.808 - - 0.843 0.965 - - Mlig455_007445 {REF} {Length: 4108} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=31.1]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=30.1]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.0]; zinc finger of C3HC4-type, RING [PF15227.8, score=29.7]; RING-type zinc-finger [PF13445.8, score=29.4]; Ring finger domain [PF13639.8, score=27.0]; zinc-RING finger domain [PF14634.8, score=25.5]; Prokaryotic RING finger family 4 [PF14447.8, score=22.2]; RING-H2 zinc finger domain [PF12678.9, score=19.9]} {Human: ENSG00000275618, BFAR, bifunctional apoptosis regulator, [RH, Score=48.9, Expect=7e-07]; ENSG00000103429, BFAR, bifunctional apoptosis regulator, [RH, Score=48.9, Expect=7e-07]} {Mouse: ENSMUSG00000022684, Bfar, bifunctional apoptosis regulator, [RH, Score=52.8, Expect=2e-08]; ENSMUSG00000057596, Trim30d, tripartite motif-containing 30D, [RH, Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_10019_0_1, dd_Smed_v6_10019_0_1, [Score=46.2, Expect=2e-06]} {RNA1509_14967, RNA1509_23909, RNA1509_40881, RNA1509_45941, RNA1509_53684} {RNA1310_39360, RNA1509_14967, RNA1509_23909, RNA1509_40881, RNA1509_45941, RNA1509_53684} {RNA1509_14967, RNA1509_23909, RNA1509_40881, RNA1509_45941, RNA1509_53684, RNA815_20181}
14. MligTC455_27310 77 1.61 Mlig455_002362

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.676

Region-enriched R2: 3.917/0.01447

 1.772 - - - - 0.951 0.821 Mlig455_002362 {REF} {Length: 2243} {RNA1310_27036} {RNA815_28595}
15. MligTC455_25410 47 0.97 Mlig455_026185

Neo: -

Age: Up-Down-Down

Region-enriched R2: 8.036/0.00469
Region-enriched R6: 6.422/0.01487

 1.757 - - - 0.952 - 0.805 Mlig455_026185 {REF} {Length: 3002} {Pfam: Variant SH3 domain [PF07653.19, score=19.6]; Growth-arrest specific micro-tubule binding [PF13851.8, score=19.3]} {Mouse: ENSMUSG00000034156, Tspoap1, TSPO associated protein 1, [Score=54.7, Expect=6e-07]} {Smed: dd_Smed_v6_14584_0_1, dd_Smed_v6_14584_0_1, [Score=140, Expect=7e-35]} {RNA1509_45271} {RNA1310_5741} {RNA815_46868}
16. MligTC455_19441 305 6.35 Mlig455_001985

Neo: -

Age: logFC(26M/2M)=-0.555

Region-enriched R2: 2.029/0.00606

 1.753 - - - 0.803 0.950 - Mlig455_001985 {REF} {Length: 2497} {RNA1509_40470} {RNA1310_22476.3, RNA1509_40470} {RNA1509_40470, RNA815_16128}
17. MligTC455_18415 812 16.92 Mlig455_062452

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.390

Regeneration-depleted R6: -5.030
Regeneration-depleted BL: -4.162
Regeneration-depleted R4: -3.331

 KLF1 1.743 - - - 0.977 - 0.766 Mlig455_062452 {REF} {Length: 1475} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=57.6]; Zinc-finger double domain [PF13465.8, score=42.8]; C2H2-type zinc finger [PF13894.8, score=35.2]; C2H2-type zinc ribbon [PF15909.7, score=22.5]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=19.2]} {Human: ENSG00000105610, KLF1, Kruppel like factor 1, [Score=129, Expect=2e-35]} {Mouse: ENSMUSG00000054191, Klf1, Kruppel-like factor 1 (erythroid), [Score=118, Expect=2e-31]; ENSMUSG00000003032, Klf4, Kruppel-like factor 4 (gut), [Score=115, Expect=6e-30]; ENSMUSG00000073209, Klf14, Kruppel-like factor 14, [Score=114, Expect=4e-30]; ENSMUSG00000035397, Klf16, Kruppel-like factor 16, [Score=114, Expect=5e-31]; ENSMUSG00000005148, Klf5, Kruppel-like factor 5, [Score=114, Expect=1e-29]; ENSMUSG00000055148, Klf2, Kruppel-like factor 2 (lung), [Score=113, Expect=1e-29]; ENSMUSG00000030087, Klf15, Kruppel-like factor 15, [Score=113, Expect=4e-29]; ENSMUSG00000033863, Klf9, Kruppel-like factor 9, [Score=113, Expect=2e-30]} {Dmel: FBgn0261705, CG42741, [Score=117, Expect=4e-31]} {Celegans: WBGene00003480, klf-3, Kruppel-Like Factor (Zinc finger protein), [Score=119, Expect=1e-32]} {Smed: dd_Smed_v6_12264_0_1, dd_Smed_v6_12264_0_1, [Score=125, Expect=9e-36]} {RNA1509_28695} {RNA1310_3186.1} {RNA815_896.1}
18. MligTC455_30176 527 10.98 Mlig455_055212, Mlig455_055259

Neo: -

Age: -

 MAP3K19 1.731 - - 0.781 0.950 - -

Mlig455_055212 {REF} {Length: 2809} {Pfam: Protein kinase domain [PF00069.27, score=159.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.8]; Ankyrin repeats (3 copies) [PF12796.9, score=78.4]; Ankyrin repeat [PF13606.8, score=55.0]; Ankyrin repeats (many copies) [PF13637.8, score=50.5]; Ankyrin repeats (many copies) [PF13857.8, score=48.2]; Ankyrin repeat [PF00023.32, score=44.0]; Fungal protein kinase [PF17667.3, score=23.3]; ABC1 atypical kinase-like domain [PF03109.18, score=19.0]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=129, Expect=3e-31]; ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=129, Expect=5e-30]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=129, Expect=2e-31]; ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=124, Expect=7e-29]} {Dmel: FBgn0024329, Mekk1, [Score=122, Expect=4e-28]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=128, Expect=2e-30]} {Smed: dd_Smed_v6_2030_0_15, dd_Smed_v6_2030_0_15, [Score=113, Expect=1e-26]} {RNA1509_38221} {RNA1310_10050} {RNA815_9449.1}

Mlig455_055259 {REF} {Length: 2622} {Pfam: Protein kinase domain [PF00069.27, score=158.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=119.0]; Ankyrin repeats (3 copies) [PF12796.9, score=61.3]; Ankyrin repeats (many copies) [PF13637.8, score=48.9]; Ankyrin repeat [PF13606.8, score=43.0]; Ankyrin repeats (many copies) [PF13857.8, score=42.8]; Ankyrin repeat [PF00023.32, score=42.3]; Fungal protein kinase [PF17667.3, score=24.6]; ABC1 atypical kinase-like domain [PF03109.18, score=18.0]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=130, Expect=2e-31]; ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=129, Expect=4e-30]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=130, Expect=1e-31]; ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=125, Expect=5e-29]} {Dmel: FBgn0024329, Mekk1, [Score=121, Expect=4e-28]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=126, Expect=1e-29]} {Smed: dd_Smed_v6_5138_0_2, dd_Smed_v6_5138_0_2, [Score=114, Expect=4e-26]} {RNA1509_38221} {RNA1310_20455} {RNA815_6977.1}
19. MligTC455_34892 372 7.75 Mlig455_064967

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.604

Region-enriched R8: 3.123/0.00904

 CYP2J2 1.704 0.740 - 0.964 - - - Mlig455_064967 {REF} {Length: 3245} {Pfam: Cytochrome P450 [PF00067.24, score=299.4]} {Human: ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=261, Expect=7e-81]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [RH, Score=276, Expect=9e-87]; ENSMUSG00000081362, Cyp2j7, cytochrome P450, family 2, subfamily j, polypeptide 7, [RH, Score=268, Expect=2e-83]; ENSMUSG00000066097, Cyp2j11, cytochrome P450, family 2, subfamily j, polypeptide 11, [RH, Score=267, Expect=2e-83]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=186, Expect=2e-52]} {Celegans: WBGene00016860, cyp-33C9, CYtochrome P450 family, [Score=226, Expect=4e-68]} {Smed: dd_Smed_v6_2351_0_2, dd_Smed_v6_2351_0_2, [Score=263, Expect=3e-82]} {RNA1509_38384, RNA1509_39728, RNA1509_51765} {RNA1310_10949.2, RNA1509_38384, RNA1509_39728, RNA1509_51765} {RNA1509_38384, RNA1509_39728, RNA1509_51765, RNA815_7159}
20. MligTC455_16012 42 0.87 Mlig455_051941

Neo: -

Age: -

 1.702 - - - 0.957 - 0.745 Mlig455_051941 {REF} {Length: 640} {RNA1310_68751} {RNA815_35508}
21. MligTC455_45177 162 3.39 Mlig455_003115

Neo: -

Age: -

Region-enriched R2: 3.498/0.00968

 1.687 - - - 0.975 - 0.712 Mlig455_003115 {REF} {Length: 1689} {RNA1310_35114} {RNA815_16921}
22. MligTC455_24967 11744 244.66 Mlig455_003878

Neo: -

Age: -

 EIF1AY 1.673 - - - 0.717 0.956 - Mlig455_003878 {REF} {Length: 1513} {Pfam: Translation initiation factor 1A / IF-1 [PF01176.21, score=83.0]} {Human: ENSG00000198692, EIF1AY, eukaryotic translation initiation factor 1A Y-linked, [RH, Score=204, Expect=2e-68]; ENSG00000173674, EIF1AX, eukaryotic translation initiation factor 1A X-linked, [RH, Score=204, Expect=2e-68]} {Mouse: ENSMUSG00000067194, Eif1ax, eukaryotic translation initiation factor 1A, X-linked, [RH, Score=204, Expect=2e-68]; ENSMUSG00000057561, Eif1a, eukaryotic translation initiation factor 1A, [RH, Score=203, Expect=7e-68]; ENSMUSG00000113805, Gm5788, predicted pseudogene 5788, [RH, Score=202, Expect=2e-67]; ENSMUSG00000113201, Gm21936, predicted gene, 21936, [RH, Score=202, Expect=1e-67]; ENSMUSG00000093847, Gm5039, predicted gene 5039, [RH, Score=202, Expect=2e-67]; ENSMUSG00000072905, Gm2016, predicted gene 2016, [RH, Score=201, Expect=5e-67]; ENSMUSG00000079034, Gm8300, predicted gene 8300, [RH, Score=200, Expect=8e-67]; ENSMUSG00000079029, Gm5662, predicted gene 5662, [RH, Score=200, Expect=9e-67]; ENSMUSG00000095799, Gm8332, predicted pseudogene 8332, [RH, Score=200, Expect=8e-67]; ENSMUSG00000095717, Gm2056, predicted gene 2056, [RH, Score=199, Expect=3e-66]; ENSMUSG00000096049, Gm2075, predicted gene 2075, [RH, Score=196, Expect=5e-65]; ENSMUSG00000096803, Gm6803, predicted gene 6803, [RH, Score=196, Expect=5e-65]; ENSMUSG00000096619, Gm2035, predicted pseudogene 2035, [RH, Score=195, Expect=1e-64]; ENSMUSG00000113971, Gm2022, predicted pseudogene 2022, [RH, Score=194, Expect=2e-64]} {Dmel: FBgn0026250, eIF1A, eukaryotic translation initiation factor 1A, [RH, Score=217, Expect=1e-73]} {Celegans: WBGene00019162, eif-1.A, Eukaryotic Initiation Factor, [RH, Score=189, Expect=7e-62]} {Smed: dd_Smed_v6_334_0_1, dd_Smed_v6_334_0_1, [RH, Score=225, Expect=3e-76]} {RNA1509_23718, RNA1509_30574, RNA1509_50724, RNA1509_560, RNA1509_58441} {RNA1310_31581, RNA1509_23718, RNA1509_30574, RNA1509_50724, RNA1509_560, RNA1509_58441} {RNA1509_23718, RNA1509_30574, RNA1509_50724, RNA1509_560, RNA1509_58441, RNA815_13282}
23. MligTC455_24968 11910 248.12 Mlig455_003668

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.637

 EIF1AY 1.671 - - - 0.717 0.954 - Mlig455_003668 {REF} {Length: 1512} {Pfam: Translation initiation factor 1A / IF-1 [PF01176.21, score=83.0]} {Human: ENSG00000198692, EIF1AY, eukaryotic translation initiation factor 1A Y-linked, [RH, Score=204, Expect=2e-68]; ENSG00000173674, EIF1AX, eukaryotic translation initiation factor 1A X-linked, [RH, Score=204, Expect=2e-68]} {Mouse: ENSMUSG00000067194, Eif1ax, eukaryotic translation initiation factor 1A, X-linked, [RH, Score=204, Expect=1e-68]; ENSMUSG00000057561, Eif1a, eukaryotic translation initiation factor 1A, [RH, Score=203, Expect=7e-68]; ENSMUSG00000113201, Gm21936, predicted gene, 21936, [RH, Score=202, Expect=1e-67]; ENSMUSG00000093847, Gm5039, predicted gene 5039, [RH, Score=202, Expect=2e-67]; ENSMUSG00000113805, Gm5788, predicted pseudogene 5788, [RH, Score=202, Expect=1e-67]; ENSMUSG00000072905, Gm2016, predicted gene 2016, [RH, Score=201, Expect=4e-67]; ENSMUSG00000079029, Gm5662, predicted gene 5662, [RH, Score=200, Expect=7e-67]; ENSMUSG00000079034, Gm8300, predicted gene 8300, [RH, Score=200, Expect=9e-67]; ENSMUSG00000095799, Gm8332, predicted pseudogene 8332, [RH, Score=200, Expect=9e-67]; ENSMUSG00000095717, Gm2056, predicted gene 2056, [RH, Score=199, Expect=3e-66]; ENSMUSG00000096803, Gm6803, predicted gene 6803, [RH, Score=196, Expect=5e-65]; ENSMUSG00000096049, Gm2075, predicted gene 2075, [RH, Score=196, Expect=5e-65]; ENSMUSG00000096619, Gm2035, predicted pseudogene 2035, [RH, Score=195, Expect=1e-64]; ENSMUSG00000113971, Gm2022, predicted pseudogene 2022, [RH, Score=194, Expect=2e-64]} {Dmel: FBgn0026250, eIF1A, eukaryotic translation initiation factor 1A, [RH, Score=217, Expect=2e-73]} {Celegans: WBGene00019162, eif-1.A, Eukaryotic Initiation Factor, [RH, Score=189, Expect=7e-62]} {Smed: dd_Smed_v6_334_0_1, dd_Smed_v6_334_0_1, [RH, Score=225, Expect=2e-76]} {RNA1509_560} {RNA1310_31581} {RNA815_13282}
24. MligTC455_27121 181 3.78 Mlig455_009362

Neo: -

Age: logFC(26M/2M)=-0.602

 0.985 - - - - 0.985 - Mlig455_009362 {REF} {Length: 2437} {RNA1509_58276} {RNA1310_7750.2} {RNA815_1043.2}
25. MligTC455_21877 35 0.73 Mlig455_014352

Neo: Germline

Age: -

 0.979 - - - - 0.979 - Mlig455_014352 {REF} {Length: 1819} {RNA1509_27316} {RNA1310_88058} {RNA815_57262}
26. MligTC455_54076 715 14.9 Mlig455_015419

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.789

 CUBN 0.974 - - 0.974 - - - Mlig455_015419 {REF} {Length: 1794} {Pfam: CUB domain [PF00431.22, score=65.2]} {Human: ENSG00000107611, CUBN, cubilin, [Score=63.2, Expect=4e-10]; ENSG00000095587, TLL2, tolloid like 2, [Score=61.6, Expect=1e-09]; ENSG00000187908, DMBT1, deleted in malignant brain tumors 1, [Score=60.8, Expect=2e-09]; ENSG00000038295, TLL1, tolloid like 1, [Score=60.1, Expect=4e-09]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=72.0, Expect=4e-13]} {Dmel: FBgn0004885, tok, tolkin, [Score=58.9, Expect=4e-09]} {Smed: dd_Smed_v6_5652_0_1, dd_Smed_v6_5652_0_1, [Score=64.7, Expect=4e-11]} {RNA1509_9300} {RNA1310_18452, RNA1509_9300} {RNA1509_9300, RNA815_8451}
27. MligTC455_28369 31 0.64 Mlig455_057050

Neo: -

Age: Down-Down-Up

 ADAM8 0.97 - - - 0.970 - - Mlig455_057050 {REF} {Length: 3660} {Pfam: Reprolysin (M12B) family zinc metalloprotease [PF01421.21, score=124.6]; Metallo-peptidase family M12 [PF13688.8, score=66.1]; ADAM cysteine-rich [PF08516.14, score=53.8]; Metallo-peptidase family M12B Reprolysin-like [PF13582.8, score=33.7]; Metallo-peptidase family M12B Reprolysin-like [PF13574.8, score=31.6]; Metallo-peptidase family M12B Reprolysin-like [PF13583.8, score=21.6]; Matrixin [PF00413.26, score=20.4]} {Human: ENSG00000151651, ADAM8, ADAM metallopeptidase domain 8, [Score=144, Expect=3e-35]} {Mouse: ENSMUSG00000025473, Adam8, a disintegrin and metallopeptidase domain 8, [Score=129, Expect=2e-30]; ENSMUSG00000050190, Gm5346, predicted gene 5346, [Score=129, Expect=1e-30]; ENSMUSG00000072647, Adam1a, a disintegrin and metallopeptidase domain 1a, [Score=127, Expect=7e-30]; ENSMUSG00000079058, Adam34, a disintegrin and metallopeptidase domain 34, [Score=123, Expect=1e-28]} {Dmel: FBgn0265140, Meltrin, [Score=173, Expect=1e-44]} {Celegans: WBGene00000074, adm-2, ADAM (Disintegrin plus metalloprotease) family, [Score=115, Expect=4e-26]} {Smed: dd_Smed_v6_10958_0_2, dd_Smed_v6_10958_0_2, [Score=113, Expect=4e-26]} {RNA1509_7654} {RNA1310_9319.1} {RNA815_4173.1}
28. MligTC455_45156 591 12.3 Mlig455_018705, Mlig455_018722, Mlig455_018742, Mlig455_018910

Neo: -

Age: Up-Down-Up

 0.969 - - - 0.969 - -

Mlig455_018705 {REF} {Length: 1236} {TRANSSPLICED} {Pfam: Tctex-1 family [PF03645.15, score=32.6]} {RNA1310_45943} {RNA815_58689}

Mlig455_018722 {REF} {Length: 1053} {Pfam: Tctex-1 family [PF03645.15, score=32.6]} {RNA1310_45943} {RNA815_58689}

Mlig455_018742 {REF} {Length: 1155} {TRANSSPLICED} {Pfam: Tctex-1 family [PF03645.15, score=30.7]} {Mouse: ENSMUSG00000047671, Tctex1d4, Tctex1 domain containing 4, [Score=47.0, Expect=5e-06]} {RNA1310_45943} {RNA815_58689}

Mlig455_018910 {REF} {Length: 1189} {Pfam: Tctex-1 family [PF03645.15, score=32.6]} {RNA1310_45943} {RNA815_58689}
29. MligTC455_54171 326 6.78 Mlig455_011840, Mlig455_013119

Neo: Irradiation

Age: -

 0.968 - - - 0.968 - -

Mlig455_011840 {REF} {Length: 1199} {NoTransDecoderORF} {RNA1509_38897} {RNA1310_27571.1} {RNA815_13580}

Mlig455_013119 {REF} {Length: 1573} {RNA1509_38897} {RNA1310_27571.1} {RNA815_13580}
30. MligTC455_28158 631 13.15 Mlig455_000408, Mlig455_018285, Mlig455_023503

Neo: -

Age: Down-Down-Down

 0.965 - - - - 0.965 -

Mlig455_000408 {REF} {Length: 931} {TRANSSPLICED} {RNA1509_34101} {RNA1310_46799} {RNA815_22648}

Mlig455_018285 {REF} {Length: 725} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_023503 {REF} {Length: 933} {TRANSSPLICED} {RNA1509_34101} {RNA1310_46799} {RNA815_22648}
31. MligTC455_47333 248 5.16 Mlig455_025849, Mlig455_025911, Mlig455_025944

Neo: -

Age: -

Region-enriched R2: 3.854/0.00576
Region-enriched R7: 3.148/0.03722

 DSTYK 0.96 - - - - 0.960 -

Mlig455_025849 {REF} {Length: 3653} {Pfam: Protein kinase domain [PF00069.27, score=138.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=120.1]; Dynamin family [PF00350.25, score=68.4]; 50S ribosome-binding GTPase [PF01926.25, score=30.6]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.7]} {Human: ENSG00000133059, DSTYK, dual serine/threonine and tyrosine protein kinase, [Score=210, Expect=8e-56]} {Mouse: ENSMUSG00000042046, Dstyk, dual serine/threonine and tyrosine protein kinase, [Score=213, Expect=8e-57]} {Dmel: FBgn0267698, Pak, p21-activated kinase, [Score=91.7, Expect=1e-18]} {Celegans: WBGene00013643, Y105C5A.24, [Score=107, Expect=2e-24]} {Smed: dd_Smed_v6_1371_0_1, dd_Smed_v6_1371_0_1, [Score=381, Expect=2e-117]} {RNA1509_32245} {RNA1310_4778} {RNA815_1558}

Mlig455_025911 {REF} {Length: 3455} {Pfam: Protein kinase domain [PF00069.27, score=83.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=59.7]; Dynamin family [PF00350.25, score=54.4]; 50S ribosome-binding GTPase [PF01926.25, score=32.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.6]} {Human: ENSG00000133059, DSTYK, dual serine/threonine and tyrosine protein kinase, [Score=134, Expect=1e-31]} {Mouse: ENSMUSG00000042046, Dstyk, dual serine/threonine and tyrosine protein kinase, [Score=136, Expect=2e-32]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=73.6, Expect=4e-13]} {Celegans: WBGene00003396, mom-4, Mitogen-activated protein kinase kinase kinase mom-4, [Score=74.7, Expect=1e-13]} {Smed: dd_Smed_v6_1371_0_1, dd_Smed_v6_1371_0_1, [Score=257, Expect=5e-73]} {RNA1509_32245} {RNA1310_4778} {RNA815_1558}

Mlig455_025944 {REF} {Length: 3829} {Pfam: Protein kinase domain [PF00069.27, score=138.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=119.9]; Dynamin family [PF00350.25, score=68.3]; 50S ribosome-binding GTPase [PF01926.25, score=30.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.7]} {Human: ENSG00000133059, DSTYK, dual serine/threonine and tyrosine protein kinase, [Score=209, Expect=2e-55]} {Mouse: ENSMUSG00000042046, Dstyk, dual serine/threonine and tyrosine protein kinase, [Score=212, Expect=2e-56]} {Dmel: FBgn0267698, Pak, p21-activated kinase, [Score=91.7, Expect=2e-18]} {Celegans: WBGene00013643, Y105C5A.24, [Score=107, Expect=3e-24]} {Smed: dd_Smed_v6_1371_0_1, dd_Smed_v6_1371_0_1, [Score=379, Expect=4e-116]} {RNA1509_32245} {RNA1310_4778} {RNA815_1558}
32. MligTC455_21927 635 13.22 Mlig455_003835, Mlig455_033247

Neo: -

Age: -

 NEK1 0.956 - - 0.956 - - -

Mlig455_003835 {REF} {Length: 3979} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=209.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=136.9]; ABC1 atypical kinase-like domain [PF03109.18, score=24.1]} {Human: ENSG00000137601, NEK1, NIMA related kinase 1, [Score=283, Expect=1e-79]} {Mouse: ENSMUSG00000031644, Nek1, NIMA (never in mitosis gene a)-related expressed kinase 1, [Score=286, Expect=1e-80]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=196, Expect=9e-52]} {Celegans: WBGene00022631, nekl-2, Serine/threonine-protein kinase nekl-2, [Score=204, Expect=2e-58]} {Smed: dd_Smed_v6_11366_0_1, dd_Smed_v6_11366_0_1, [Score=256, Expect=3e-71]} {RNA1509_15605} {RNA1310_4409.1} {RNA815_7286}

Mlig455_033247 {REF} {Length: 4929} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=210.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=137.5]; ABC1 atypical kinase-like domain [PF03109.18, score=24.0]} {Human: ENSG00000137601, NEK1, NIMA related kinase 1, [Score=283, Expect=2e-79]} {Mouse: ENSMUSG00000031644, Nek1, NIMA (never in mitosis gene a)-related expressed kinase 1, [Score=282, Expect=4e-79]} {Dmel: FBgn0045980, niki, nimA-like kinase, [Score=196, Expect=1e-51]} {Celegans: WBGene00022631, nekl-2, Serine/threonine-protein kinase nekl-2, [Score=204, Expect=3e-58]} {Smed: dd_Smed_v6_11366_0_1, dd_Smed_v6_11366_0_1, [Score=256, Expect=4e-71]} {RNA1509_15605, RNA1509_54860} {RNA1310_4409.1, RNA1509_15605, RNA1509_54860} {RNA1509_15605, RNA1509_54860, RNA815_7286}
33. MligTC455_27679 168 3.49 Mlig455_059443

Neo: -

Age: -

 GOLPH3 0.956 - - - 0.956 - - Mlig455_059443 {REF} {Length: 2464} {TRANSSPLICED} {Pfam: Golgi phosphoprotein 3 (GPP34) [PF05719.13, score=180.2]} {Human: ENSG00000113384, GOLPH3, golgi phosphoprotein 3, [RH, Score=355, Expect=4e-123]} {Mouse: ENSMUSG00000022200, Golph3, golgi phosphoprotein 3, [RH, Score=352, Expect=5e-122]} {Dmel: FBgn0267378, sau, sauron, [Score=344, Expect=6e-119]} {Celegans: WBGene00021644, Y47G6A.18, [Score=323, Expect=5e-111]} {Smed: dd_Smed_v6_1770_0_2, dd_Smed_v6_1770_0_2, [Score=340, Expect=6e-118]} {RNA1310_29186} {RNA815_27407}
34. MligTC455_39916 83 1.74 Mlig455_007692

Neo: -

Age: -

 OSTC 0.956 - - - - 0.956 - Mlig455_007692 {REF} {Length: 1096} {Human: ENSG00000198856, OSTC, oligosaccharyltransferase complex non-catalytic subunit, [Score=111, Expect=8e-32]} {Mouse: ENSMUSG00000041084, Ostc, oligosaccharyltransferase complex subunit (non-catalytic), [Score=111, Expect=6e-32]} {Dmel: FBgn0031529, CG9662, [Score=115, Expect=9e-34]} {Smed: dd_Smed_v6_3467_0_1, dd_Smed_v6_3467_0_1, [Score=123, Expect=3e-37]} {RNA1310_57974} {RNA815_34502}
35. MligTC455_27803 96 1.99 Mlig455_000283

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_000283 {REF} {Length: 3407} {RNA1509_13206} {RNA1310_1311.1} {RNA815_19414}
36. MligTC455_23775 598 12.45 Mlig455_053158

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.517

 0.952 - - - 0.952 - - Mlig455_053158 {REF} {Length: 1887} {RNA1509_43013} {RNA1310_12180.1, RNA1509_43013} {RNA1509_43013, RNA815_6222}
37. MligTC455_47239 197 4.11 Mlig455_010867

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_010867 {REF} {Length: 569} {NoTransDecoderORF} {RNA1509_22398} {RNA1310_25370}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA