M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49728

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49728 9366 195.13 Mlig455_064924, Mlig455_064956

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.287

Mlig455_064924 {REF} {Length: 804} {Pfam: Universal stress protein family [PF00582.28, score=85.4]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [RH, Score=138, Expect=3e-42]} {RNA1509_11066} {RNA1310_18757.1} {RNA815_5768.1}

Mlig455_064956 {REF} {Length: 1238} {Pfam: Universal stress protein family [PF00582.28, score=85.4]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [RH, Score=138, Expect=3e-42]} {RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633} {RNA1310_18757.1, RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633} {RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633, RNA815_5768.1}

Cumulative graph for MligTC455_49728

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.011 7.602 0.02467 0.41731
RegionR2 0.405 7.602 0.15544 0.49352
RegionR3 0.2 7.602 0.42277 0.94550
RegionR4 0.573 7.602 0.05596 0.20821
RegionR5 -0.506 7.602 0.05452 0.19929
RegionR6 0.144 7.602 0.56714 1.00000
RegionR7 0.047 7.602 0.85977 1.00000
RegionR8 0.147 7.602 0.61253 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.001 7.602 0.05452 0.71128
RegenerationR2 0.494 7.602 0.11150 0.52174
RegenerationR3 -0.048 7.602 0.88135 1.00000
RegenerationR4 -0.271 7.602 0.42078 0.82595
RegenerationR5 -0.368 7.602 0.25641 0.68880
RegenerationR6 -0.5 7.602 0.12758 0.43903
RegenerationBL 0.066 7.602 0.81713 1.00000
RegenerationTP -0.156 7.602 0.61822 0.97137


Genes with expression patterns similar to MligTC455_49728

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49728 9366 195.13 Mlig455_064924, Mlig455_064956

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.287

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_064924 {REF} {Length: 804} {Pfam: Universal stress protein family [PF00582.28, score=85.4]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [RH, Score=138, Expect=3e-42]} {RNA1509_11066} {RNA1310_18757.1} {RNA815_5768.1}

Mlig455_064956 {REF} {Length: 1238} {Pfam: Universal stress protein family [PF00582.28, score=85.4]} {Smed: dd_Smed_v6_1092_0_1, dd_Smed_v6_1092_0_1, [RH, Score=138, Expect=3e-42]} {RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633} {RNA1310_18757.1, RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633} {RNA1509_11066, RNA1509_17487, RNA1509_2031, RNA1509_3780, RNA1509_51744, RNA1509_6633, RNA815_5768.1}
2. MligTC455_51711 12053 251.1 Mlig455_024544

Neo: -

Age: logFC(26M/2M)=0.250

Region-specific R2: 1.689

Region-enriched R8: 1.181/0.00003

Regeneration-downregulated TP: -1.390

Regeneration-depleted TP: -1.390

 5.349 0.851 0.912 0.958 0.889 0.843 0.896 Mlig455_024544 {REF} {Length: 1633} {RNA1509_891} {RNA1310_24129} {RNA815_10418.2}
3. MligTC455_51712 12157 253.26 Mlig455_024579

Neo: -

Age: logFC(26M/2M)=-0.392

Region-enriched R8: 1.189/0.00026

Regeneration-downregulated TP: -1.372

Regeneration-depleted TP: -1.372

 5.347 0.841 0.909 0.956 0.908 0.840 0.893 Mlig455_024579 {REF} {Length: 1524} {RNA1509_28514, RNA1509_35723} {RNA1310_24129, RNA1509_35723} {RNA1509_35723, RNA815_10418.2}
4. MligTC455_29045 127 2.65 Mlig455_056054

Neo: -

Age: -

Region-enriched R2: 4.858/0.00652

 FZD5 4.124 - 0.706 0.748 0.835 0.954 0.881 Mlig455_056054 {REF} {Length: 3655} {Pfam: Frizzled/Smoothened family membrane region [PF01534.19, score=389.0]; Fz domain [PF01392.24, score=85.2]} {Human: ENSG00000163251, FZD5, frizzled class receptor 5, [Score=554, Expect=0.0]} {Mouse: ENSMUSG00000045005, Fzd5, frizzled class receptor 5, [Score=561, Expect=0.0]} {Dmel: FBgn0016797, fz2, frizzled 2, [Score=516, Expect=5e-176]} {Celegans: WBGene00000478, cfz-2, Frizzled-2, [Score=368, Expect=3e-120]} {Smed: dd_Smed_v6_16571_0_1, dd_Smed_v6_16571_0_1, [Score=522, Expect=7e-178]} {RNA1509_35313} {RNA1310_9623.1} {RNA815_2562.1}
5. MligTC455_41336 2300 47.91 Mlig455_057780

Neo: -

Age: -

Region-enriched R4: 1.418/0.03753

 3.364 0.791 - 0.822 0.783 - 0.968 Mlig455_057780 {REF} {Length: 1487} {RNA1509_16083} {RNA1310_28218} {RNA815_20896}
6. MligTC455_34939 11641 242.52 Mlig455_033101

Neo: -

Age: Down-Up-Down

 YWHAE 3.313 - - 0.911 0.727 0.953 0.722 Mlig455_033101 {REF} {Length: 1802} {Pfam: 14-3-3 protein [PF00244.22, score=345.4]} {Human: ENSG00000108953, YWHAE, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon, [RH, Score=389, Expect=6e-138]; ENSG00000274474, YWHAE, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon, [RH, Score=389, Expect=6e-138]} {Mouse: ENSMUSG00000020849, Ywhae, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide, [RH, Score=389, Expect=4e-138]} {Dmel: FBgn0020238, 14-3-3epsilon, [RH, Score=390, Expect=2e-138]} {Celegans: WBGene00001502, ftt-2, 14-3-3-like protein 2, [Score=309, Expect=8e-107]} {Smed: dd_Smed_v6_36_0_1, dd_Smed_v6_36_0_1, [RH, Score=336, Expect=1e-117]} {RNA1509_10719, RNA1509_25396, RNA1509_481, RNA1509_6204} {RNA1310_17104.1, RNA1509_10719, RNA1509_25396, RNA1509_481, RNA1509_6204} {RNA1509_10719, RNA1509_25396, RNA1509_481, RNA1509_6204, RNA815_7528.1}
7. MligTC455_35296 3716 77.42 Mlig455_021730

Neo: -

Age: logFC(26M/2M)=-0.211

 RAB11B 3.206 - 0.781 0.737 - 0.958 0.730 Mlig455_021730 {REF} {Length: 4827} {Pfam: Ras family [PF00071.24, score=161.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=109.2]; ADP-ribosylation factor family [PF00025.23, score=50.2]; 50S ribosome-binding GTPase [PF01926.25, score=28.2]; RsgA GTPase [PF03193.18, score=19.7]} {Human: ENSG00000185236, RAB11B, RAB11B, member RAS oncogene family, [Score=146, Expect=6e-39]} {Mouse: ENSMUSG00000077450, Rab11b, RAB11B, member RAS oncogene family, [Score=145, Expect=5e-39]; ENSMUSG00000079657, Rab26, RAB26, member RAS oncogene family, [Score=139, Expect=1e-35]; ENSMUSG00000004771, Rab11a, RAB11A, member RAS oncogene family, [Score=138, Expect=2e-36]} {Dmel: FBgn0015790, Rab11, [Score=139, Expect=6e-37]} {Celegans: WBGene00004271, rab-7, RAB family, [Score=135, Expect=8e-36]} {Smed: dd_Smed_v6_4001_0_1, dd_Smed_v6_4001_0_1, [Score=136, Expect=3e-36]} {RNA1509_48652, RNA1509_48880, RNA1509_8793, RNA1509_9768} {RNA1310_4344.1, RNA1509_48652, RNA1509_48880, RNA1509_8793} {RNA1509_48652, RNA1509_48880, RNA1509_8793, RNA815_5085}
8. MligTC455_52094 4020 83.75 Mlig455_031829, Mlig455_047685

Neo: -

Age: -

 ANK3 1.908 - - 0.943 0.965 - -

Mlig455_031829 {REF} {Length: 1078} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=95.2]; Ankyrin repeats (many copies) [PF13637.8, score=69.4]; Ankyrin repeats (many copies) [PF13857.8, score=56.4]; Ankyrin repeat [PF00023.32, score=51.7]; Ankyrin repeat [PF13606.8, score=42.0]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=69.3, Expect=4e-13]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=67.8, Expect=1e-12]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=65.9, Expect=3e-12]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=63.9, Expect=1e-11]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=66.2, Expect=2e-12]} {Smed: dd_Smed_v6_10099_0_1, dd_Smed_v6_10099_0_1, [RH, Score=116, Expect=2e-32]} {RNA1509_31784} {RNA1310_30615} {RNA815_15961}

Mlig455_047685 {REF} {Length: 1075} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=95.2]; Ankyrin repeats (many copies) [PF13637.8, score=69.4]; Ankyrin repeats (many copies) [PF13857.8, score=56.4]; Ankyrin repeat [PF00023.32, score=51.7]; Ankyrin repeat [PF13606.8, score=42.0]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=69.3, Expect=4e-13]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=67.8, Expect=1e-12]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=65.9, Expect=3e-12]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=63.9, Expect=1e-11]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=66.2, Expect=2e-12]} {Smed: dd_Smed_v6_10099_0_1, dd_Smed_v6_10099_0_1, [RH, Score=116, Expect=2e-32]} {RNA1509_15359, RNA1509_31784, RNA1509_46865, RNA1509_49227, RNA1509_52013} {RNA1310_30615, RNA1509_15359, RNA1509_31784, RNA1509_46865, RNA1509_49227, RNA1509_52013} {RNA1509_15359, RNA1509_31784, RNA1509_46865, RNA1509_49227, RNA1509_52013, RNA815_15961}
9. MligTC455_45471 23727 494.31 Mlig455_028137, Mlig455_028271

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.393

 CD151 1.847 - 0.881 - - - 0.966

Mlig455_028137 {REF} {Length: 1391} {Pfam: Tetraspanin family [PF00335.22, score=128.3]; Phosphoinositide-interacting protein family [PF15099.8, score=21.5]} {Human: ENSG00000177697, CD151, CD151 molecule (Raph blood group), [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000030342, Cd9, CD9 antigen, [Score=77.8, Expect=1e-16]; ENSMUSG00000028699, Tspan1, tetraspanin 1, [Score=74.3, Expect=2e-15]} {Dmel: FBgn0033629, Tsp47F, Tetraspanin 47F, [Score=63.5, Expect=2e-11]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=59.7, Expect=2e-10]} {Smed: dd_Smed_v6_13639_0_1, dd_Smed_v6_13639_0_1, [Score=135, Expect=3e-38]} {RNA1509_36047, RNA1509_5803, RNA1509_664, RNA1509_8534} {RNA1310_25267.1, RNA1509_36047, RNA1509_5803, RNA1509_8534} {RNA1509_36047, RNA1509_5803, RNA1509_8534, RNA815_10913}

Mlig455_028271 {REF} {Length: 1491} {Pfam: Tetraspanin family [PF00335.22, score=128.3]; Phosphoinositide-interacting protein family [PF15099.8, score=21.5]} {Human: ENSG00000177697, CD151, CD151 molecule (Raph blood group), [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000030342, Cd9, CD9 antigen, [Score=77.8, Expect=1e-16]; ENSMUSG00000028699, Tspan1, tetraspanin 1, [Score=74.3, Expect=2e-15]} {Dmel: FBgn0033629, Tsp47F, Tetraspanin 47F, [Score=63.5, Expect=2e-11]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=59.7, Expect=2e-10]} {Smed: dd_Smed_v6_13639_0_1, dd_Smed_v6_13639_0_1, [Score=135, Expect=3e-38]} {RNA1509_664} {RNA1310_25267.1, RNA1509_664} {RNA1509_664, RNA815_10913}
10. MligTC455_45470 11800 245.83 Mlig455_028075

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=2.087

 CD151 1.838 - 0.875 - - - 0.963 Mlig455_028075 {REF} {Length: 1394} {Pfam: Tetraspanin family [PF00335.22, score=128.3]; Phosphoinositide-interacting protein family [PF15099.8, score=20.1]} {Human: ENSG00000177697, CD151, CD151 molecule (Raph blood group), [Score=75.1, Expect=3e-15]} {Mouse: ENSMUSG00000030342, Cd9, CD9 antigen, [Score=77.8, Expect=1e-16]; ENSMUSG00000028699, Tspan1, tetraspanin 1, [Score=74.3, Expect=2e-15]} {Dmel: FBgn0033629, Tsp47F, Tetraspanin 47F, [Score=63.5, Expect=2e-11]} {Celegans: WBGene00006633, tsp-7, Tetraspanin, [Score=60.1, Expect=1e-10]} {Smed: dd_Smed_v6_13639_0_1, dd_Smed_v6_13639_0_1, [Score=135, Expect=3e-38]} {RNA1509_664} {RNA1310_25267.1} {RNA815_10913}
11. MligTC455_24472 738 15.38 Mlig455_039540

Neo: -

Age: Up-Down-Down

 CSMD2 1.795 - - - 0.830 0.965 - Mlig455_039540 {REF} {Length: 18394} {Pfam: Sushi repeat (SCR repeat) [PF00084.22, score=107.2]; CUB domain [PF00431.22, score=96.4]; Calcium-binding EGF domain [PF07645.17, score=47.4]; Complement Clr-like EGF-like [PF12662.9, score=23.2]; Coagulation Factor Xa inhibitory site [PF14670.8, score=22.1]} {Human: ENSG00000121904, CSMD2, CUB and Sushi multiple domains 2, [Score=103, Expect=8e-21]} {Mouse: ENSMUSG00000060924, Csmd1, CUB and Sushi multiple domains 1, [Score=97.1, Expect=5e-19]; ENSMUSG00000022311, Csmd3, CUB and Sushi multiple domains 3, [Score=95.5, Expect=2e-18]; ENSMUSG00000028804, Csmd2, CUB and Sushi multiple domains 2, [Score=93.6, Expect=6e-18]} {Dmel: FBgn0031879, uif, uninflatable, [Score=207, Expect=1e-52]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=210, Expect=1e-53]} {Smed: dd_Smed_v6_5652_0_1, dd_Smed_v6_5652_0_1, [Score=77.4, Expect=1e-13]} {RNA1509_104, RNA1509_1720} {RNA1310_11.1, RNA1509_104} {RNA1509_104, RNA815_7}
12. MligTC455_49237 1147 23.89 Mlig455_053089

Neo: -

Age: Down-Up-Down

 CAMK4 1.691 - - 0.965 0.726 - - Mlig455_053089 {REF} {Length: 2761} {Pfam: Protein kinase domain [PF00069.27, score=263.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=117.6]; Fungal protein kinase [PF17667.3, score=24.4]; ABC1 atypical kinase-like domain [PF03109.18, score=20.0]} {Human: ENSG00000152495, CAMK4, calcium/calmodulin dependent protein kinase IV, [Score=351, Expect=4e-118]} {Mouse: ENSMUSG00000038128, Camk4, calcium/calmodulin-dependent protein kinase IV, [Score=353, Expect=3e-119]} {Dmel: FBgn0016126, CaMKI, Calcium/calmodulin-dependent protein kinase I, [Score=248, Expect=2e-79]} {Celegans: WBGene00000553, cmk-1, Calcium/calmodulin-dependent protein kinase type 1, [Score=245, Expect=8e-79]} {Smed: dd_Smed_v6_10731_0_1, dd_Smed_v6_10731_0_1, [Score=357, Expect=1e-122]} {RNA1509_27017, RNA1509_8403} {RNA1310_11195.2, RNA1509_27017, RNA1509_8403} {RNA1509_27017, RNA1509_8403, RNA815_9103.1}
13. MligTC455_41880 1136 23.67 Mlig455_013517

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_013517 {REF} {Length: 2631} {Smed: dd_Smed_v6_13043_0_1, dd_Smed_v6_13043_0_1, [RH, Score=299, Expect=4e-91]} {RNA1509_15478, RNA1509_18670} {RNA1310_7739.1, RNA1509_15478, RNA1509_18670} {RNA1509_15478, RNA1509_18670, RNA815_2588}
14. MligTC455_29085 34 0.72 Mlig455_047082

Neo: -

Age: -

 RASGRF2 0.951 - - - - 0.951 - Mlig455_047082 {REF} {Length: 6322} {Pfam: RasGEF domain [PF00617.21, score=194.4]; RhoGEF domain [PF00621.22, score=120.6]; RasGEF N-terminal motif [PF00618.22, score=68.8]; PH domain [PF00169.31, score=20.4]} {Human: ENSG00000113319, RASGRF2, Ras protein specific guanine nucleotide releasing factor 2, [Score=570, Expect=0.0]; ENSG00000058335, RASGRF1, Ras protein specific guanine nucleotide releasing factor 1, [Score=566, Expect=3e-178]} {Mouse: ENSMUSG00000032356, Rasgrf1, RAS protein-specific guanine nucleotide-releasing factor 1, [Score=565, Expect=5e-178]} {Dmel: FBgn0001965, Sos, Son of sevenless, [Score=167, Expect=4e-41]} {Celegans: WBGene00004947, sos-1, Son of sevenless homolog, [Score=119, Expect=1e-26]} {Smed: dd_Smed_v6_18313_0_2, dd_Smed_v6_18313_0_2, [Score=815, Expect=0.0]} {RNA1509_15697, RNA1509_53969} {RNA1310_2543.1, RNA1509_53969} {RNA1509_53969, RNA815_8228.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA