M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45595

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45595 1466 30.55 Mlig455_000888

Neo: -

Age: -

 Mlig455_000888 {REF} {Length: 622} {TRANSSPLICED} {RNA1509_19509} {RNA1310_43792.1, RNA1509_19509} {RNA1509_19509, RNA815_23198.1}

Cumulative graph for MligTC455_45595

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.003 5.037 0.16014 0.78078
RegionR2 0.213 5.037 0.56126 0.92336
RegionR3 -0.203 5.037 0.52692 1.00000
RegionR4 0.248 5.037 0.47052 0.79861
RegionR5 0.794 5.037 0.00498 0.03450
RegionR6 0.443 5.037 0.15224 0.69557
RegionR7 0.063 5.037 0.86312 1.00000
RegionR8 -0.554 5.037 0.22488 0.83404

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.347 5.037 0.08437 0.78241
RegenerationR2 -0.575 5.037 0.10590 0.51174
RegenerationR3 -0.093 5.037 0.80832 0.98447
RegenerationR4 -0.596 5.037 0.11480 0.51769
RegenerationR5 -0.902 5.037 0.01133 0.18758
RegenerationR6 -0.61 5.037 0.10925 0.40875
RegenerationBL -0.152 5.037 0.69985 1.00000
RegenerationTP 0.662 5.037 0.10226 0.49681


Genes with expression patterns similar to MligTC455_45595

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45595 1466 30.55 Mlig455_000888

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_000888 {REF} {Length: 622} {TRANSSPLICED} {RNA1509_19509} {RNA1310_43792.1, RNA1509_19509} {RNA1509_19509, RNA815_23198.1}
2. MligTC455_25353 9033 188.19 Mlig455_007868, Mlig455_021140

Neo: -

Age: Down-Up-Up

 HIST4H4 1.844 - - - 0.890 0.954 -

Mlig455_007868 {REF} {Length: 1216} {Pfam: Centromere kinetochore component CENP-T histone fold [PF15511.8, score=33.4]; TATA box binding protein associated factor (TAF) [PF02969.19, score=25.4]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=23.3]; CENP-S protein [PF15630.8, score=23.3]; Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=21.2]} {Human: ENSG00000197837, HIST4H4, histone cluster 4 H4, [RH, Score=199, Expect=1e-67]; ENSG00000274618, HIST1H4F, histone cluster 1 H4 family member f, [RH, Score=199, Expect=1e-67]; ENSG00000197238, HIST1H4J, histone cluster 1 H4 family member j, [RH, Score=199, Expect=1e-67]; ENSG00000270882, HIST2H4A, histone cluster 2 H4 family member a, [RH, Score=199, Expect=1e-67]; ENSG00000276180, HIST1H4I, histone cluster 1 H4 family member i, [RH, Score=199, Expect=1e-67]; ENSG00000158406, HIST1H4H, histone cluster 1 H4 family member h, [RH, Score=199, Expect=1e-67]; ENSG00000276966, HIST1H4E, histone cluster 1 H4 family member e, [RH, Score=199, Expect=1e-67]; ENSG00000273542, HIST1H4K, histone cluster 1 H4 family member k, [RH, Score=199, Expect=1e-67]; ENSG00000278637, HIST1H4A, histone cluster 1 H4 family member a, [RH, Score=199, Expect=1e-67]; ENSG00000275126, HIST1H4L, histone cluster 1 H4 family member l, [RH, Score=199, Expect=1e-67]; ENSG00000277157, HIST1H4D, histone cluster 1 H4 family member d, [RH, Score=199, Expect=1e-67]; ENSG00000197061, HIST1H4C, histone cluster 1 H4 family member c, [RH, Score=199, Expect=1e-67]; ENSG00000278705, HIST1H4B, histone cluster 1 H4 family member b, [RH, Score=199, Expect=1e-67]; ENSG00000270276, HIST2H4B, histone cluster 2 H4 family member b, [RH, Score=199, Expect=1e-67]} {Mouse: ENSMUSG00000061482, Hist1h4d, histone cluster 1, H4d, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060639, Hist1h4i, histone cluster 1, H4i, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069266, Hist1h4b, histone cluster 1, H4b, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060981, Hist1h4h, histone cluster 1, H4h, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069306, Hist1h4m, histone cluster 1, H4m, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060678, Hist1h4c, histone cluster 1, H4c, [RH, Score=199, Expect=1e-67]; ENSMUSG00000091405, Hist2h4, histone cluster 2, H4, [RH, Score=199, Expect=1e-67]; ENSMUSG00000096010, Hist4h4, histone cluster 4, H4, [RH, Score=199, Expect=1e-67]; ENSMUSG00000064288, Hist1h4k, histone cluster 1, H4k, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069274, Hist1h4f, histone cluster 1, H4f, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060093, Hist1h4a, histone cluster 1, H4a, [RH, Score=199, Expect=1e-67]; ENSMUSG00000067455, Hist1h4j, histone cluster 1, H4j, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069305, Hist1h4n, histone cluster 1, H4n, [RH, Score=199, Expect=1e-67]} {Dmel: FBgn0013981, His4r, Histone H4 replacement, [RH, Score=197, Expect=2e-67]} {Celegans: WBGene00001920, his-46, Histone H4, [RH, Score=197, Expect=3e-67]} {Smed: dd_Smed_v6_5700_0_1, dd_Smed_v6_5700_0_1, [RH, Score=199, Expect=4e-68]} {RNA1509_3012} {RNA1310_36467} {RNA815_18705}

Mlig455_021140 {REF} {Length: 3267} {Pfam: Centromere kinetochore component CENP-T histone fold [PF15511.8, score=33.4]; TATA box binding protein associated factor (TAF) [PF02969.19, score=25.4]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=23.3]; CENP-S protein [PF15630.8, score=23.3]; Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=21.2]} {Human: ENSG00000197837, HIST4H4, histone cluster 4 H4, [RH, Score=199, Expect=1e-67]; ENSG00000274618, HIST1H4F, histone cluster 1 H4 family member f, [RH, Score=199, Expect=1e-67]; ENSG00000197238, HIST1H4J, histone cluster 1 H4 family member j, [RH, Score=199, Expect=1e-67]; ENSG00000270882, HIST2H4A, histone cluster 2 H4 family member a, [RH, Score=199, Expect=1e-67]; ENSG00000276180, HIST1H4I, histone cluster 1 H4 family member i, [RH, Score=199, Expect=1e-67]; ENSG00000158406, HIST1H4H, histone cluster 1 H4 family member h, [RH, Score=199, Expect=1e-67]; ENSG00000276966, HIST1H4E, histone cluster 1 H4 family member e, [RH, Score=199, Expect=1e-67]; ENSG00000273542, HIST1H4K, histone cluster 1 H4 family member k, [RH, Score=199, Expect=1e-67]; ENSG00000278637, HIST1H4A, histone cluster 1 H4 family member a, [RH, Score=199, Expect=1e-67]; ENSG00000275126, HIST1H4L, histone cluster 1 H4 family member l, [RH, Score=199, Expect=1e-67]; ENSG00000277157, HIST1H4D, histone cluster 1 H4 family member d, [RH, Score=199, Expect=1e-67]; ENSG00000197061, HIST1H4C, histone cluster 1 H4 family member c, [RH, Score=199, Expect=1e-67]; ENSG00000278705, HIST1H4B, histone cluster 1 H4 family member b, [RH, Score=199, Expect=1e-67]; ENSG00000270276, HIST2H4B, histone cluster 2 H4 family member b, [RH, Score=199, Expect=1e-67]} {Mouse: ENSMUSG00000061482, Hist1h4d, histone cluster 1, H4d, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060639, Hist1h4i, histone cluster 1, H4i, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069266, Hist1h4b, histone cluster 1, H4b, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060981, Hist1h4h, histone cluster 1, H4h, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069306, Hist1h4m, histone cluster 1, H4m, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060678, Hist1h4c, histone cluster 1, H4c, [RH, Score=199, Expect=1e-67]; ENSMUSG00000091405, Hist2h4, histone cluster 2, H4, [RH, Score=199, Expect=1e-67]; ENSMUSG00000096010, Hist4h4, histone cluster 4, H4, [RH, Score=199, Expect=1e-67]; ENSMUSG00000064288, Hist1h4k, histone cluster 1, H4k, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069274, Hist1h4f, histone cluster 1, H4f, [RH, Score=199, Expect=1e-67]; ENSMUSG00000060093, Hist1h4a, histone cluster 1, H4a, [RH, Score=199, Expect=1e-67]; ENSMUSG00000067455, Hist1h4j, histone cluster 1, H4j, [RH, Score=199, Expect=1e-67]; ENSMUSG00000069305, Hist1h4n, histone cluster 1, H4n, [RH, Score=199, Expect=1e-67]} {Dmel: FBgn0013981, His4r, Histone H4 replacement, [RH, Score=197, Expect=2e-67]} {Celegans: WBGene00001920, his-46, Histone H4, [RH, Score=197, Expect=3e-67]} {Smed: dd_Smed_v6_5700_0_1, dd_Smed_v6_5700_0_1, [RH, Score=199, Expect=4e-68]} {RNA1509_1791, RNA1509_22069, RNA1509_22555, RNA1509_3012} {RNA1310_36467, RNA1509_1791, RNA1509_22069, RNA1509_22555, RNA1509_3012} {RNA1509_1791, RNA1509_22069, RNA1509_22555, RNA1509_3012, RNA815_18705}
3. MligTC455_30871 827 17.22 Mlig455_006406

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_006406 {REF} {Length: 650} {TRANSSPLICED} {RNA1509_13351, RNA1509_27053, RNA1509_29554} {RNA1310_56244, RNA1509_13351, RNA1509_27053, RNA1509_29554} {RNA1509_13351, RNA1509_27053, RNA1509_29554, RNA815_28747.1}
4. MligTC455_26300 687 14.31 Mlig455_042036

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.566

 0.957 - - - - 0.957 - Mlig455_042036 {REF} {Length: 2763} {TRANSSPLICED} {Pfam: Soluble NSF attachment protein, SNAP [PF14938.8, score=311.5]; Tetratricopeptide repeat [PF13424.8, score=33.3]; Tetratricopeptide repeat [PF13371.8, score=19.4]} {Celegans: WBGene00017016, snap-1, SNAP (Soluble NSF Attachment Protein) homolog, [Score=130, Expect=6e-34]} {Smed: dd_Smed_v6_2480_0_1, dd_Smed_v6_2480_0_1, [Score=111, Expect=4e-27]} {RNA1509_29458} {RNA1310_15661} {RNA815_16299}
5. MligTC455_18850 747 15.56 Mlig455_066916

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_066916 {REF} {Length: 1443} {TRANSSPLICED} {Pfam: SUZ domain [PF12752.9, score=43.3]} {RNA1509_41034} {RNA1310_22799} {RNA815_9711.1}
6. MligTC455_45489 120 2.5 Mlig455_045790

Neo: Int S/G2/M

Age: Down-Up-Down

 0.95 - - - - 0.950 - Mlig455_045790 {REF} {Length: 3796} {RNA1509_39375} {RNA1310_2062.2} {RNA815_16661}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA