TomoSeq data search

Data search

Results for MligTC455_45710

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_45710	73	1.53	Mlig455_006020, Mlig455_068079	Neo: - Age: -		Mlig455_006020 {REF} {Length: 1065} {Pfam: F5/8 type C domain [PF00754.27, score=33.3]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [RH, Score=68.2, Expect=2e-14]} {RNA1310_41523} {RNA815_40123} Mlig455_068079 {REF} {Length: 1039} {Pfam: F5/8 type C domain [PF00754.27, score=36.2]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=64.3, Expect=4e-13]} {RNA1310_58725} {RNA815_40123}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_45710

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.888	1.483	1.00000	1.00000
RegionR2	-0.112	1.483	0.76995	1.00000
RegionR3	-1.444	1.483	0.96539	1.00000
RegionR4	2.457	1.483	0.11345	0.33408
RegionR5	1.3	1.483	0.27309	0.59887
RegionR6	2.14	1.483	0.06758	0.48568
RegionR7	-3.8	1.483	1.00000	1.00000
RegionR8	2.349	1.483	0.13097	0.66294

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.054	1.483	1.00000	1.00000
RegenerationR2	0.684	1.483	0.51198	0.87636
RegenerationR3	0.707	1.483	0.60074	0.90830
RegenerationR4	-0.405	1.483	0.75291	0.97037
RegenerationR5	-1.158	1.483	0.33235	0.75315
RegenerationR6	-0.914	1.483	0.44146	0.76507
RegenerationBL	1.285	1.483	0.38910	0.75748
RegenerationTP	3.148	1.483	0.08060	0.45161

Genes with expression patterns similar to MligTC455_45710

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_45710	73	1.53	Mlig455_006020, Mlig455_068079	Neo: - Age: -		5	1.000	-	1.000	1.000	1.000	1.000	Mlig455_006020 {REF} {Length: 1065} {Pfam: F5/8 type C domain [PF00754.27, score=33.3]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [RH, Score=68.2, Expect=2e-14]} {RNA1310_41523} {RNA815_40123} Mlig455_068079 {REF} {Length: 1039} {Pfam: F5/8 type C domain [PF00754.27, score=36.2]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=64.3, Expect=4e-13]} {RNA1310_58725} {RNA815_40123}
2.	MligTC455_51066	526	10.97	Mlig455_044665, Mlig455_044724	Neo: - Age: Down-Up-Down Region-enriched R8: 5.381/0.00000		1.788	-	-	-	0.832	-	0.956	Mlig455_044665 {REF} {Length: 1268} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975} Mlig455_044724 {REF} {Length: 1327} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}
3.	MligTC455_27290	257	5.35	Mlig455_030127, Mlig455_030193	Neo: - Age: - Region-enriched R6: 7.668/0.00057	CHAC2	1.784	-	-	-	-	0.990	0.794	Mlig455_030127 {REF} {Length: 1234} {Pfam: ChaC-like protein [PF04752.14, score=100.2]; Gamma-glutamyl cyclotransferase, AIG2-like [PF06094.14, score=21.1]} {Human: ENSG00000143942, CHAC2, ChaC cation transport regulator homolog 2, [Score=78.6, Expect=9e-17]} {Mouse: ENSMUSG00000020309, Chac2, ChaC, cation transport regulator 2, [Score=82.0, Expect=3e-18]; ENSMUSG00000027313, Chac1, ChaC, cation transport regulator 1, [Score=80.1, Expect=3e-17]} {Dmel: FBgn0039109, CG10365, [Score=77.8, Expect=4e-16]} {Smed: dd_Smed_v6_2439_0_1, dd_Smed_v6_2439_0_1, [Score=90.1, Expect=4e-21]} {RNA1310_101360} {RNA815_62755} Mlig455_030193 {REF} {Length: 1234} {Pfam: ChaC-like protein [PF04752.14, score=100.2]; Gamma-glutamyl cyclotransferase, AIG2-like [PF06094.14, score=21.1]} {Human: ENSG00000143942, CHAC2, ChaC cation transport regulator homolog 2, [Score=78.6, Expect=9e-17]} {Mouse: ENSMUSG00000020309, Chac2, ChaC, cation transport regulator 2, [Score=82.0, Expect=3e-18]; ENSMUSG00000027313, Chac1, ChaC, cation transport regulator 1, [Score=80.1, Expect=3e-17]} {Dmel: FBgn0039109, CG10365, [Score=77.8, Expect=4e-16]} {Smed: dd_Smed_v6_2439_0_1, dd_Smed_v6_2439_0_1, [Score=90.1, Expect=4e-21]} {RNA1310_101360} {RNA815_62755}
4.	MligTC455_24662	42	0.88	Mlig455_047950	Neo: - Age: -	URGCP	1.782	-	-	-	0.804	0.978	-	Mlig455_047950 {REF} {Length: 5366} {Pfam: Dynamin family [PF00350.25, score=28.9]; Root hair defective 3 GTP-binding protein (RHD3) [PF05879.14, score=25.9]; Guanylate-binding protein, N-terminal domain [PF02263.21, score=24.2]; 50S ribosome-binding GTPase [PF01926.25, score=22.3]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [Score=155, Expect=8e-38]} {Mouse: ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [Score=312, Expect=5e-86]; ENSMUSG00000078606, Gm4070, predicted gene 4070, [Score=312, Expect=5e-86]} {RNA1509_25042} {RNA1310_285} {RNA815_97.1}
5.	MligTC455_50772	61	1.28	Mlig455_050043	Neo: - Age: -		1.69	-	-	-	0.969	-	0.721	Mlig455_050043 {REF} {Length: 2906} {Pfam: Innexin [PF00876.20, score=406.8]} {Dmel: FBgn0085387, shakB, shaking B, [Score=123, Expect=4e-31]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=333, Expect=6e-111]} {Smed: dd_Smed_v6_11077_0_2, dd_Smed_v6_11077_0_2, [RH, Score=507, Expect=4e-178]} {RNA1509_51082} {RNA1310_20499} {RNA815_8755}
6.	MligTC455_25318	85	1.77	Mlig455_022125	Neo: Irradiation Age: Up-Down-Down Region-enriched R4: 3.046/0.02891		0.987	-	-	-	-	-	0.987	Mlig455_022125 {REF} {Length: 2145} {RNA1509_17391} {RNA1310_28598} {RNA815_31621}
7.	MligTC455_35611	39	0.81	Mlig455_041313	Neo: - Age: -		0.978	-	-	-	-	0.978	-	Mlig455_041313 {REF} {Length: 518} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_49355.1} {RNA815_59105}
8.	MligTC455_21438	23	0.48	Mlig455_002691	Neo: - Age: -		0.973	-	-	-	-	-	0.973	Mlig455_002691 {REF} {Length: 2265} {RNA1509_38425} {RNA1310_26350} {RNA815_19893}
9.	MligTC455_52982	227	4.73	Mlig455_054687	Neo: - Age: Down-Up-Up	IPMK	0.973	-	-	-	-	0.973	-	Mlig455_054687 {REF} {Length: 2651} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=138.9]} {Human: ENSG00000151151, IPMK, inositol polyphosphate multikinase, [RH, Score=124, Expect=4e-31]} {Mouse: ENSMUSG00000060733, Ipmk, inositol polyphosphate multikinase, [Score=114, Expect=8e-28]} {Dmel: FBgn0031267, Ipk2, [Score=100, Expect=9e-24]} {Celegans: WBGene00009262, F30A10.3, Kinase, [RH, Score=66.6, Expect=5e-12]} {Smed: dd_Smed_v6_3701_0_1, dd_Smed_v6_3701_0_1, [Score=119, Expect=9e-31]} {RNA1509_12297} {RNA1310_13642} {RNA815_4311}
10.	MligTC455_29991	55	1.14	Mlig455_035129, Mlig455_040144	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.706		0.97	-	-	-	-	-	0.970	Mlig455_035129 {REF} {Length: 406} {Pfam: Mab-21 protein [PF03281.16, score=26.3]} {RNA1509_26004} {RNA1310_36482} {RNA815_1664.2} Mlig455_040144 {REF} {Length: 2361} {Pfam: Mab-21 protein [PF03281.16, score=40.1]} {RNA1509_26004} {RNA1310_3906.1} {RNA815_1664.1}
11.	MligTC455_51023	117	2.45	Mlig455_042608, Mlig455_042638	Neo: - Age: - Region-enriched R7: 5.859/0.00000		0.97	-	-	-	-	0.970	-	Mlig455_042608 {REF} {Length: 1963} {RNA1310_20305} {RNA815_32236} Mlig455_042638 {REF} {Length: 1998} {RNA1310_20305} {RNA815_32236}
12.	MligTC455_51915	16	0.33	Mlig455_012053	Neo: - Age: Up-Down-Up		0.967	-	-	-	-	0.967	-	Mlig455_012053 {REF} {Length: 1746} {TRANSSPLICED} {RNA1509_41350} {RNA1310_32126} {RNA815_14123.1}
13.	MligTC455_35029	11	0.22	Mlig455_054491	Neo: - Age: -		0.962	-	-	-	-	0.962	-	Mlig455_054491 {REF} {Length: 1809} {NoTransDecoderORF} {RNA1509_59554} {RNA1310_105528.1} {RNA815_9685.1}
14.	MligTC455_18880	57	1.19	Mlig455_034555, Mlig455_041488	Neo: - Age: -		0.96	-	-	-	-	-	0.960	Mlig455_034555 {REF} {Length: 588} {Smed: dd_Smed_v6_512_0_1, dd_Smed_v6_512_0_1, [Score=41.2, Expect=3e-06]} {RNA1509_11091} {RNA1310_4937.1} {RNA815_15376} Mlig455_041488 {REF} {Length: 714} {Pfam: Stathmin family [PF00836.21, score=25.1]} {Smed: dd_Smed_v6_512_0_2, dd_Smed_v6_512_0_2, [Score=60.1, Expect=4e-13]} {RNA1509_11091} {RNA1310_4937.1} {RNA815_15376}
15.	MligTC455_44063	170	3.54	Mlig455_028414, Mlig455_028436	Neo: - Age: -	CDC40	0.96	-	-	-	-	0.960	-	Mlig455_028414 {REF} {Length: 2513} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=109.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=41.4]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=20.6]} {Human: ENSG00000168438, CDC40, cell division cycle 40, [RH, Score=642, Expect=0.0]} {Mouse: ENSMUSG00000038446, Cdc40, cell division cycle 40, [RH, Score=641, Expect=0.0]} {Dmel: FBgn0038927, CG6015, [RH, Score=639, Expect=0.0]} {Celegans: WBGene00018625, prp-17, Yeast PRP (Splicing factor) related, [RH, Score=565, Expect=0.0]} {Smed: dd_Smed_v6_8113_0_1, dd_Smed_v6_8113_0_1, [RH, Score=604, Expect=0.0]} {RNA1509_11194} {RNA1310_9590.1} {RNA815_3224} Mlig455_028436 {REF} {Length: 3035} {Pfam: WD domain, G-beta repeat [PF00400.34, score=108.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=40.9]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=20.6]} {Human: ENSG00000168438, CDC40, cell division cycle 40, [RH, Score=644, Expect=0.0]} {Mouse: ENSMUSG00000038446, Cdc40, cell division cycle 40, [RH, Score=642, Expect=0.0]} {Dmel: FBgn0038927, CG6015, [RH, Score=641, Expect=0.0]} {Celegans: WBGene00018625, prp-17, Yeast PRP (Splicing factor) related, [RH, Score=566, Expect=0.0]} {Smed: dd_Smed_v6_8113_0_1, dd_Smed_v6_8113_0_1, [RH, Score=604, Expect=0.0]} {RNA1509_37756, RNA1509_53516} {RNA1310_9590.1, RNA1509_37756, RNA1509_53516} {RNA1509_37756, RNA1509_53516, RNA815_3224}
16.	MligTC455_27164	223	4.64	Mlig455_017998	Neo: - Age: -		0.959	-	-	-	-	-	0.959	Mlig455_017998 {REF} {Length: 10191} {RNA1509_13590} {RNA1310_14.1} {RNA815_275}
17.	MligTC455_41660	162	3.38	Mlig455_054021	Neo: - Age: -		0.959	-	-	-	-	-	0.959	Mlig455_054021 {REF} {Length: 441} {NoTransDecoderORF} {RNA1509_37967} {RNA1310_6299.1} {RNA815_1994.1}
18.	MligTC455_01375	8	0.16	Mlig455_007546	Neo: - Age: Down-Up-Up		0.958	-	-	-	-	0.958	-	Mlig455_007546 {REF} {Length: 250} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_32884} {RNA815_3377}
19.	MligTC455_46216	1117	23.28	Mlig455_057440	Neo: - Age: - Region-enriched R7: 2.350/0.00017 Region-enriched R8: 2.312/0.00270	RBPMS2	0.958	-	-	-	0.958	-	-	Mlig455_057440 {REF} {Length: 4543} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.4]} {Human: ENSG00000166831, RBPMS2, RNA binding protein, mRNA processing factor 2, [RH, Score=128, Expect=2e-35]} {Mouse: ENSMUSG00000031586, Rbpms, RNA binding protein gene with multiple splicing, [RH, Score=125, Expect=3e-35]} {Dmel: FBgn0263995, cpo, couch potato, [Score=164, Expect=7e-46]} {Celegans: WBGene00003172, mec-8, Mec-8 protein, [Score=124, Expect=4e-33]} {Smed: dd_Smed_v6_4296_0_4, dd_Smed_v6_4296_0_4, [Score=150, Expect=3e-43]} {RNA1509_30119} {RNA1310_16586.1} {RNA815_23894}
20.	MligTC455_53564	13	0.28	Mlig455_047513	Neo: - Age: -		0.958	-	-	-	-	0.958	-	Mlig455_047513 {REF} {Length: 1021} {NoTransDecoderORF} {RNA1509_42521} {RNA1310_97658} {RNA815_24713}
21.	MligTC455_08991	14	0.3	Mlig455_021559	Neo: - Age: -		0.956	-	-	-	-	-	0.956	Mlig455_021559 {REF} {Length: 393} {TRANSSPLICED} {NoTransDecoderORF}
22.	MligTC455_21407	22	0.45	Mlig455_005585	Neo: - Age: - Regeneration-upregulated R6: 7.360 Regeneration-enriched R6: 7.360		0.956	-	-	-	-	0.956	-	Mlig455_005585 {REF} {Length: 760} {NoTransDecoderORF} {RNA1310_50467} {RNA815_29560}
23.	MligTC455_52093	200	4.17	Mlig455_026940, Mlig455_027028, Mlig455_027091	Neo: - Age: -		0.956	-	-	-	-	-	0.956	Mlig455_026940 {REF} {Length: 2010} {RNA1310_29141} {RNA815_58200} Mlig455_027028 {REF} {Length: 1107} {NoTransDecoderORF} {RNA1310_29141} {RNA815_58200} Mlig455_027091 {REF} {Length: 1224} {RNA1310_29141} {RNA815_58200}
24.	MligTC455_00092	8	0.17	Mlig455_002951	Neo: - Age: -		0.955	-	-	-	-	0.955	-	Mlig455_002951 {REF} {Length: 188} {NoTransDecoderORF}
25.	MligTC455_10719	61	1.26	Mlig455_041088	Neo: - Age: -		0.951	-	-	-	-	-	0.951	Mlig455_041088 {REF} {Length: 338} {NoTransDecoderORF} {RNA1310_18998}
26.	MligTC455_40564	90	1.88	Mlig455_006475	Neo: - Age: logFC(26M/2M)=-0.456		0.95	-	-	0.950	-	-	-	Mlig455_006475 {REF} {Length: 1172} {TRANSSPLICED} {RNA1509_54096} {RNA1310_22226, RNA1509_54096} {RNA1509_54096, RNA815_21651}