M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_45979

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_45979 1495 31.14 Mlig455_048041

Neo: -

Age: logFC(26M/2M)=-0.324

Region-enriched R3: 1.592/0.00034
Region-enriched R4: 1.191/0.03936

 CYP2A13 Mlig455_048041 {REF} {Length: 2571} {Pfam: Cytochrome P450 [PF00067.24, score=301.0]} {Human: ENSG00000197838, CYP2A13, cytochrome P450 family 2 subfamily A member 13, [Score=209, Expect=3e-61]; ENSG00000255974, CYP2A6, cytochrome P450 family 2 subfamily A member 6, [Score=205, Expect=2e-59]; ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=204, Expect=7e-59]; ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=204, Expect=3e-59]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=222, Expect=4e-66]; ENSMUSG00000066704, Cyp2b19, cytochrome P450, family 2, subfamily b, polypeptide 19, [Score=221, Expect=1e-65]; ENSMUSG00000081225, Cyp2j12, cytochrome P450, family 2, subfamily j, polypeptide 12, [Score=220, Expect=2e-65]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=217, Expect=3e-64]; ENSMUSG00000096852, Cyp2d12, cytochrome P450, family 2, subfamily d, polypeptide 12, [Score=213, Expect=1e-62]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=213, Expect=1e-62]} {Celegans: WBGene00018261, cyp-33C5, CYtochrome P450 family, [Score=236, Expect=7e-72]} {Smed: dd_Smed_v6_2083_0_1, dd_Smed_v6_2083_0_1, [Score=254, Expect=9e-79]} {RNA1509_10370, RNA1509_36098, RNA1509_9487} {RNA1310_10863, RNA1509_10370, RNA1509_36098, RNA1509_9487} {RNA1509_10370, RNA1509_36098, RNA1509_9487, RNA815_3923}

Cumulative graph for MligTC455_45979

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.261 5.32 0.07209 0.59722
RegionR2 0.288 5.32 0.54441 0.91115
RegionR3 1.592 5.32 0.00000 0.00034
RegionR4 1.191 5.32 0.00554 0.03936
RegionR5 0.875 5.32 0.01103 0.06197
RegionR6 -0.44 5.32 0.30401 0.89519
RegionR7 -0.887 5.32 0.09844 0.60028
RegionR8 -0.357 5.32 0.55574 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.369 5.32 0.86292 1.00000
RegenerationR2 -0.192 5.32 0.62753 0.92610
RegenerationR3 -0.322 5.32 0.41957 0.81454
RegenerationR4 -0.337 5.32 0.43627 0.83452
RegenerationR5 -0.396 5.32 0.31641 0.74052
RegenerationR6 -0.583 5.32 0.19855 0.53895
RegenerationBL -0.521 5.32 0.32851 0.69467
RegenerationTP -0.333 5.32 0.55337 0.93549


Genes with expression patterns similar to MligTC455_45979

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_45979 1495 31.14 Mlig455_048041

Neo: -

Age: logFC(26M/2M)=-0.324

Region-enriched R3: 1.592/0.00034
Region-enriched R4: 1.191/0.03936

 CYP2A13 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_048041 {REF} {Length: 2571} {Pfam: Cytochrome P450 [PF00067.24, score=301.0]} {Human: ENSG00000197838, CYP2A13, cytochrome P450 family 2 subfamily A member 13, [Score=209, Expect=3e-61]; ENSG00000255974, CYP2A6, cytochrome P450 family 2 subfamily A member 6, [Score=205, Expect=2e-59]; ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=204, Expect=7e-59]; ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=204, Expect=3e-59]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=222, Expect=4e-66]; ENSMUSG00000066704, Cyp2b19, cytochrome P450, family 2, subfamily b, polypeptide 19, [Score=221, Expect=1e-65]; ENSMUSG00000081225, Cyp2j12, cytochrome P450, family 2, subfamily j, polypeptide 12, [Score=220, Expect=2e-65]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=217, Expect=3e-64]; ENSMUSG00000096852, Cyp2d12, cytochrome P450, family 2, subfamily d, polypeptide 12, [Score=213, Expect=1e-62]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=213, Expect=1e-62]} {Celegans: WBGene00018261, cyp-33C5, CYtochrome P450 family, [Score=236, Expect=7e-72]} {Smed: dd_Smed_v6_2083_0_1, dd_Smed_v6_2083_0_1, [Score=254, Expect=9e-79]} {RNA1509_10370, RNA1509_36098, RNA1509_9487} {RNA1310_10863, RNA1509_10370, RNA1509_36098, RNA1509_9487} {RNA1509_10370, RNA1509_36098, RNA1509_9487, RNA815_3923}
2. MligTC455_49035 540 11.26 Mlig455_031499

Neo: -

Age: logFC(26M/2M)=0.462

Region-enriched R3: 2.099/0.00078

 AADAC 2.613 - - - 0.950 0.883 0.780 Mlig455_031499 {REF} {Length: 1514} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF07859.15, score=174.9]; Carboxylesterase family [PF00135.30, score=25.1]} {Human: ENSG00000114771, AADAC, arylacetamide deacetylase, [RH, Score=153, Expect=4e-42]; ENSG00000188984, AADACL3, arylacetamide deacetylase like 3, [RH, Score=146, Expect=2e-39]} {Mouse: ENSMUSG00000027698, Nceh1, neutral cholesterol ester hydrolase 1, [RH, Score=137, Expect=5e-36]; ENSMUSG00000078505, Gm436, predicted gene 436, [RH, Score=133, Expect=1e-34]} {Celegans: WBGene00017515, F16F9.4, [Score=127, Expect=8e-33]} {Smed: dd_Smed_v6_4674_0_1, dd_Smed_v6_4674_0_1, [Score=130, Expect=5e-34]} {RNA1509_12919} {RNA1310_22061, RNA1509_12919} {RNA1509_12919, RNA815_10584}
3. MligTC455_50630 266 5.55 Mlig455_016781, Mlig455_016800

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.660

Region-enriched R3: 2.467/0.02683

 NPL 1.765 - - - 0.814 - 0.951

Mlig455_016781 {REF} {Length: 2232} {TRANSSPLICED} {Pfam: Dihydrodipicolinate synthetase family [PF00701.24, score=135.2]} {Human: ENSG00000135838, NPL, N-acetylneuraminate pyruvate lyase, [RH, Score=166, Expect=2e-48]} {Mouse: ENSMUSG00000042684, Npl, N-acetylneuraminate pyruvate lyase, [RH, Score=177, Expect=4e-53]} {Smed: dd_Smed_v6_2981_0_1, dd_Smed_v6_2981_0_1, [RH, Score=124, Expect=3e-33]} {RNA1509_37383} {RNA1310_25843.2} {RNA815_6069.1}

Mlig455_016800 {REF} {Length: 2238} {TRANSSPLICED} {Pfam: Dihydrodipicolinate synthetase family [PF00701.24, score=135.2]} {Human: ENSG00000135838, NPL, N-acetylneuraminate pyruvate lyase, [RH, Score=166, Expect=2e-48]} {Mouse: ENSMUSG00000042684, Npl, N-acetylneuraminate pyruvate lyase, [RH, Score=177, Expect=4e-53]} {Smed: dd_Smed_v6_2981_0_1, dd_Smed_v6_2981_0_1, [RH, Score=124, Expect=3e-33]} {RNA1509_20791, RNA1509_37383, RNA1509_57913} {RNA1310_25843.2, RNA1509_20791, RNA1509_37383, RNA1509_57913} {RNA1509_20791, RNA1509_37383, RNA1509_57913, RNA815_6069.1}
4. MligTC455_07569 28 0.59 Mlig455_066997

Neo: -

Age: -

 1.736 - - - - 0.782 0.954 Mlig455_066997 {REF} {Length: 819} {RNA1509_50562} {RNA1310_122277}
5. MligTC455_53862 155 3.23 Mlig455_012200

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_012200 {REF} {Length: 995} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=19.3]} {RNA1310_67285} {RNA815_35008}
6. MligTC455_28437 49 1.02 Mlig455_054662

Neo: -

Age: Up-Up-Down

 0.952 - - - - - 0.952 Mlig455_054662 {REF} {Length: 1938} {NoTransDecoderORF} {RNA1509_25886} {RNA1310_11504.1} {RNA815_17069.1}
7. MligTC455_09817 22 0.46 Mlig455_022138

Neo: -

Age: Down-Down-Up

 OSR1 0.95 - - - - - 0.950 Mlig455_022138 {REF} {Length: 2172} {Pfam: Zinc-finger double domain [PF13465.8, score=47.7]; Zinc finger, C2H2 type [PF00096.28, score=43.3]; C2H2-type zinc finger [PF13894.8, score=28.5]; C2H2-type zinc finger [PF13912.8, score=19.6]} {Human: ENSG00000143867, OSR1, odd-skipped related transciption factor 1, [Score=143, Expect=2e-41]; ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [Score=142, Expect=3e-41]} {Mouse: ENSMUSG00000048387, Osr1, odd-skipped related transcription factor 1, [Score=143, Expect=1e-41]; ENSMUSG00000022330, Osr2, odd-skipped related 2, [Score=142, Expect=2e-41]} {Dmel: FBgn0002985, odd, odd skipped, [Score=139, Expect=3e-39]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [Score=150, Expect=1e-44]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [Score=151, Expect=6e-45]} {RNA1509_28642} {RNA1310_40286} {RNA815_48894}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA