M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53862

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53862 155 3.23 Mlig455_012200

Neo: -

Age: -

 Mlig455_012200 {REF} {Length: 995} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=19.3]} {RNA1310_67285} {RNA815_35008}

Cumulative graph for MligTC455_53862

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.62 2.35 0.24422 0.89005
RegionR2 3.028 2.35 0.01092 0.10619
RegionR3 -0.535 2.35 0.96832 1.00000
RegionR4 -1.418 2.35 0.99563 1.00000
RegionR5 -1.292 2.35 0.99586 1.00000
RegionR6 0.765 2.35 0.52280 1.00000
RegionR7 2.463 2.35 0.05408 0.44768
RegionR8 2.61 2.35 0.09130 0.57105

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.116 2.35 0.99989 1.00000
RegenerationR2 -0.144 2.35 0.87576 1.00000
RegenerationR3 4.098 2.35 0.00019 0.01753
RegenerationR4 3.582 2.35 0.00045 0.02018
RegenerationR5 3.032 2.35 0.00301 0.09660
RegenerationR6 2.655 2.35 0.00649 0.09861
RegenerationBL 1.501 2.35 0.10750 0.38704
RegenerationTP 0.12 2.35 0.91399 1.00000


Genes with expression patterns similar to MligTC455_53862

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53862 155 3.23 Mlig455_012200

Neo: -

Age: -

 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_012200 {REF} {Length: 995} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=19.3]} {RNA1310_67285} {RNA815_35008}
2. MligTC455_24386 107 2.24 Mlig455_010245

Neo: -

Age: -

Region-enriched R5: 2.148/0.04167

 PRR9 0.976 - - - - - 0.976 Mlig455_010245 {REF} {Length: 2798} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=45.4, Expect=4e-06]} {RNA1310_35288} {RNA815_16280}
3. MligTC455_30868 86 1.8 Mlig455_007682, Mlig455_020997

Neo: -

Age: -

 0.964 - - - - - 0.964

Mlig455_007682 {REF} {Length: 3292} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=45.5]; Ankyrin repeat [PF13606.8, score=36.3]; Ankyrin repeat [PF00023.32, score=35.1]; Ankyrin repeats (many copies) [PF13637.8, score=26.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.3]} {RNA1509_14810} {RNA1310_3488.1, RNA1509_14810} {RNA1509_14810, RNA815_6042.1}

Mlig455_020997 {REF} {Length: 4389} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=45.5]; Ankyrin repeat [PF13606.8, score=36.3]; Ankyrin repeat [PF00023.32, score=35.1]; Ankyrin repeats (many copies) [PF13637.8, score=26.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.3]} {RNA1509_14810} {RNA1310_3488.1} {RNA815_6042.1}
4. MligTC455_45827 391 8.15 Mlig455_038859

Neo: -

Age: -

 AARS2 0.956 - - - 0.956 - - Mlig455_038859 {REF} {Length: 2888} {Pfam: tRNA synthetases class II (A) [PF01411.21, score=150.5]; Threonyl and Alanyl tRNA synthetase second additional domain [PF07973.16, score=23.5]} {Human: ENSG00000124608, AARS2, alanyl-tRNA synthetase 2, mitochondrial, [Score=234, Expect=1e-64]} {Mouse: ENSMUSG00000023938, Aars2, alanyl-tRNA synthetase 2, mitochondrial, [Score=245, Expect=1e-68]} {Dmel: FBgn0027094, AlaRS, Alanyl-tRNA synthetase, [Score=229, Expect=3e-63]} {Celegans: WBGene00000197, aars-2, Alanine--tRNA ligase, cytoplasmic, [Score=210, Expect=8e-57]} {Smed: dd_Smed_v6_4233_0_1, dd_Smed_v6_4233_0_1, [Score=221, Expect=1e-60]} {RNA1509_11036} {RNA1310_3138.1} {RNA815_933}
5. MligTC455_45979 1495 31.14 Mlig455_048041

Neo: -

Age: logFC(26M/2M)=-0.324

Region-enriched R3: 1.592/0.00034
Region-enriched R4: 1.191/0.03936

 CYP2A13 0.953 - - - - - 0.953 Mlig455_048041 {REF} {Length: 2571} {Pfam: Cytochrome P450 [PF00067.24, score=301.0]} {Human: ENSG00000197838, CYP2A13, cytochrome P450 family 2 subfamily A member 13, [Score=209, Expect=3e-61]; ENSG00000255974, CYP2A6, cytochrome P450 family 2 subfamily A member 6, [Score=205, Expect=2e-59]; ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=204, Expect=7e-59]; ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=204, Expect=3e-59]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=222, Expect=4e-66]; ENSMUSG00000066704, Cyp2b19, cytochrome P450, family 2, subfamily b, polypeptide 19, [Score=221, Expect=1e-65]; ENSMUSG00000081225, Cyp2j12, cytochrome P450, family 2, subfamily j, polypeptide 12, [Score=220, Expect=2e-65]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=217, Expect=3e-64]; ENSMUSG00000096852, Cyp2d12, cytochrome P450, family 2, subfamily d, polypeptide 12, [Score=213, Expect=1e-62]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=213, Expect=1e-62]} {Celegans: WBGene00018261, cyp-33C5, CYtochrome P450 family, [Score=236, Expect=7e-72]} {Smed: dd_Smed_v6_2083_0_1, dd_Smed_v6_2083_0_1, [Score=254, Expect=9e-79]} {RNA1509_10370, RNA1509_36098, RNA1509_9487} {RNA1310_10863, RNA1509_10370, RNA1509_36098, RNA1509_9487} {RNA1509_10370, RNA1509_36098, RNA1509_9487, RNA815_3923}
6. MligTC455_53366 2231 46.48 Mlig455_004303

Neo: -

Age: -

Region-enriched R3: 1.061/0.04127

 DHCR24 0.95 - - - - - 0.950 Mlig455_004303 {REF} {Length: 2028} {Human: ENSG00000116133, DHCR24, 24-dehydrocholesterol reductase, [Score=124, Expect=2e-33]} {Mouse: ENSMUSG00000034926, Dhcr24, 24-dehydrocholesterol reductase, [Score=124, Expect=2e-33]} {Celegans: WBGene00012407, Y7A5A.1, [Score=239, Expect=5e-77]} {Smed: dd_Smed_v6_21866_0_1, dd_Smed_v6_21866_0_1, [Score=203, Expect=2e-63]} {RNA1509_46378} {RNA1310_2661.1} {RNA815_713.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA