M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46077

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46077 28 0.59 Mlig455_033572

Neo: -

Age: Down-Up-Down

 UFC1 Mlig455_033572 {REF} {Length: 1485} {TRANSSPLICED} {Pfam: Ubiquitin-fold modifier-conjugating enzyme 1 [PF08694.13, score=281.3]} {Human: ENSG00000143222, UFC1, ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=286, Expect=4e-100]} {Mouse: ENSMUSG00000062963, Ufc1, ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=282, Expect=8e-99]} {Dmel: FBgn0034061, Ufc1, Ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=284, Expect=1e-99]} {Celegans: WBGene00008041, ufc-1, Ubiquitin-fold modifier-conjugating enzyme 1, [RH, Score=263, Expect=2e-91]} {Smed: dd_Smed_v6_4590_0_1, dd_Smed_v6_4590_0_1, [RH, Score=294, Expect=8e-104]} {RNA1509_49289, RNA1509_5279} {RNA1310_33140, RNA1509_5279} {RNA1509_5279, RNA815_11898}

Cumulative graph for MligTC455_46077

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.562 1.041 0.99968 1.00000
RegionR2 0.653 1.041 0.65714 0.99004
RegionR3 -2.154 1.041 0.99967 1.00000
RegionR4 1.473 1.041 0.29556 0.60722
RegionR5 1.09 1.041 0.33641 0.68258
RegionR6 -0.699 1.041 0.82150 1.00000
RegionR7 0.353 1.041 0.63705 1.00000
RegionR8 -0.153 1.041 0.99974 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.801 1.041 0.99986 1.00000
RegenerationR2 -2.884 1.041 0.00570 0.12006
RegenerationR3 -0.649 1.041 0.64548 0.92690
RegenerationR4 -2.312 1.041 0.14080 0.56311
RegenerationR5 -1.075 1.041 0.46535 0.84010
RegenerationR6 -0.932 1.041 0.60854 0.87315
RegenerationBL -0.546 1.041 0.92542 1.00000
RegenerationTP -3.558 1.041 0.99969 1.00000


Genes with expression patterns similar to MligTC455_46077

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46077 28 0.59 Mlig455_033572

Neo: -

Age: Down-Up-Down

 UFC1 2 - - 1.000 - 1.000 - Mlig455_033572 {REF} {Length: 1485} {TRANSSPLICED} {Pfam: Ubiquitin-fold modifier-conjugating enzyme 1 [PF08694.13, score=281.3]} {Human: ENSG00000143222, UFC1, ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=286, Expect=4e-100]} {Mouse: ENSMUSG00000062963, Ufc1, ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=282, Expect=8e-99]} {Dmel: FBgn0034061, Ufc1, Ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=284, Expect=1e-99]} {Celegans: WBGene00008041, ufc-1, Ubiquitin-fold modifier-conjugating enzyme 1, [RH, Score=263, Expect=2e-91]} {Smed: dd_Smed_v6_4590_0_1, dd_Smed_v6_4590_0_1, [RH, Score=294, Expect=8e-104]} {RNA1509_49289, RNA1509_5279} {RNA1310_33140, RNA1509_5279} {RNA1509_5279, RNA815_11898}
2. MligTC455_46078 28 0.58 Mlig455_067060

Neo: -

Age: Down-Up-Down

 UFC1 2 - - 1.000 - 1.000 - Mlig455_067060 {REF} {Length: 1498} {TRANSSPLICED} {Pfam: Ubiquitin-fold modifier-conjugating enzyme 1 [PF08694.13, score=281.3]} {Human: ENSG00000143222, UFC1, ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=286, Expect=4e-100]} {Mouse: ENSMUSG00000062963, Ufc1, ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=282, Expect=8e-99]} {Dmel: FBgn0034061, Ufc1, Ubiquitin-fold modifier conjugating enzyme 1, [RH, Score=284, Expect=1e-99]} {Celegans: WBGene00008041, ufc-1, Ubiquitin-fold modifier-conjugating enzyme 1, [RH, Score=263, Expect=2e-91]} {Smed: dd_Smed_v6_4590_0_1, dd_Smed_v6_4590_0_1, [RH, Score=294, Expect=8e-104]} {RNA1509_5279} {RNA1310_33140} {RNA815_11898}
3. MligTC455_38848 524 10.92 Mlig455_023471

Neo: -

Age: Down-Up-Down

 DYNC2LI1 0.973 - - - - 0.973 - Mlig455_023471 {REF} {Length: 2561} {TRANSSPLICED} {Pfam: Dynein light intermediate chain (DLIC) [PF05783.13, score=48.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=26.1]; ADP-ribosylation factor family [PF00025.23, score=25.2]} {Human: ENSG00000138036, DYNC2LI1, dynein cytoplasmic 2 light intermediate chain 1, [RH, Score=249, Expect=1e-79]} {Mouse: ENSMUSG00000024253, Dync2li1, dynein cytoplasmic 2 light intermediate chain 1, [RH, Score=258, Expect=2e-83]} {Dmel: FBgn0032119, CG3769, [RH, Score=144, Expect=3e-39]} {Celegans: WBGene00006960, xbx-1, X-BoX promoter element regulated, [RH, Score=186, Expect=2e-55]} {Smed: dd_Smed_v6_4291_0_1, dd_Smed_v6_4291_0_1, [RH, Score=277, Expect=4e-91]} {RNA1509_9549} {RNA1310_22996, RNA1509_9549} {RNA1509_9549, RNA815_3626.1}
4. MligTC455_38730 466 9.7 Mlig455_065842

Neo: Int S/G2/M

Age: Up-Down-Down

 FAM135A 0.962 - - - - 0.962 - Mlig455_065842 {REF} {Length: 5344} {TRANSSPLICED} {Pfam: Protein FAM135 [PF12394.10, score=57.2]} {Human: ENSG00000082269, FAM135A, family with sequence similarity 135 member A, [RH, Score=185, Expect=8e-51]} {Mouse: ENSMUSG00000026153, Fam135a, family with sequence similarity 135, member A, [Score=174, Expect=4e-45]} {Dmel: FBgn0052333, CG32333, [Score=186, Expect=2e-49]} {Celegans: WBGene00015635, C09D4.4, [Score=52.0, Expect=1e-06]} {Smed: dd_Smed_v6_4890_0_16, dd_Smed_v6_4890_0_16, [Score=154, Expect=4e-39]} {RNA1509_37264} {RNA1310_399.1} {RNA815_1643.1}
5. MligTC455_30095 1981 41.28 Mlig455_023711

Neo: Irradiation

Age: -

Region-enriched R5: 1.273/0.00042

Regeneration-upregulated BL: 1.666

Regeneration-enriched BL: 1.666

 NLK 0.953 - - - - 0.953 - Mlig455_023711 {REF} {Length: 2780} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=218.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=107.2]; ABC1 atypical kinase-like domain [PF03109.18, score=20.8]; Fungal protein kinase [PF17667.3, score=18.7]; Haspin like kinase domain [PF12330.10, score=18.3]} {Human: ENSG00000087095, NLK, nemo like kinase, [RH, Score=420, Expect=4e-142]} {Mouse: ENSMUSG00000017376, Nlk, nemo like kinase, [RH, Score=420, Expect=3e-142]} {Dmel: FBgn0011817, nmo, nemo, [Score=417, Expect=6e-143]} {Celegans: WBGene00003048, lit-1, Serine/threonine kinase NLK, [RH, Score=394, Expect=5e-131]} {Smed: dd_Smed_v6_4172_0_3, dd_Smed_v6_4172_0_3, [RH, Score=409, Expect=2e-139]} {RNA1509_20758, RNA1509_5850} {RNA1310_6603.1, RNA1509_20758, RNA1509_5850} {RNA1509_20758, RNA1509_5850, RNA815_2023}
6. MligTC455_54102 228 4.75 Mlig455_012249, Mlig455_012262, Mlig455_052497

Neo: -

Age: logFC(26M/2M)=0.459

Region-enriched R5: 3.431/0.00196

 0.952 - - 0.952 - - -

Mlig455_012249 {REF} {Length: 1454} {TRANSSPLICED} {RNA1310_29892} {RNA815_39834}

Mlig455_012262 {REF} {Length: 1597} {TRANSSPLICED} {RNA1310_29892} {RNA815_39834}

Mlig455_052497 {REF} {Length: 1723} {TRANSSPLICED} {RNA1310_29892} {RNA815_39834}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA