TomoSeq data search

Data search

Results for MligTC455_46203

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_46203

3770

78.55

Mlig455_049752

Neo: -

Age: -

Region-enriched R7: 1.760/0.00000

CALU

Mlig455_049752 {REF} {Length: 2079} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=66.3]; EF-hand domain pair [PF13499.8, score=58.7]; EF hand [PF13202.8, score=57.6]; EF-hand domain [PF13405.8, score=49.2]; EF-hand domain pair [PF13833.8, score=37.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=29.0]} {Human: ENSG00000128595, CALU, calumenin, [RH, Score=283, Expect=6e-94]} {Mouse: ENSMUSG00000029767, Calu, calumenin, [RH, Score=281, Expect=1e-93]; ENSMUSG00000005973, Rcn1, reticulocalbin 1, [RH, Score=270, Expect=4e-89]} {Dmel: FBgn0025682, scf, supercoiling factor, [RH, Score=262, Expect=4e-86]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [RH, Score=246, Expect=3e-80]} {Smed: dd_Smed_v6_1417_0_1, dd_Smed_v6_1417_0_1, [RH, Score=291, Expect=4e-98]} {RNA1509_17778, RNA1509_19441, RNA1509_22170, RNA1509_3183, RNA1509_53504, RNA1509_8953} {RNA1310_12875, RNA1509_17778, RNA1509_19441, RNA1509_22170, RNA1509_3183, RNA1509_53504, RNA1509_8953} {RNA1509_17778, RNA1509_19441, RNA1509_22170, RNA1509_3183, RNA1509_53504, RNA1509_8953, RNA815_4462.2}

Cumulative graph for MligTC455_46203

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.869	6.457	0.11392	0.69892
RegionR2	-0.893	6.457	0.00450	0.05991
RegionR3	-0.513	6.457	0.04976	0.38977
RegionR4	-0.233	6.457	0.41522	0.74269
RegionR5	0.077	6.457	0.74431	1.00000
RegionR6	0.656	6.457	0.00695	0.13430
RegionR7	1.76	6.457	0.00000	0.00000
RegionR8	0.014	6.457	0.96791	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.629	6.457	0.43157	1.00000
RegenerationR2	0.451	6.457	0.13847	0.56702
RegenerationR3	0.311	6.457	0.31667	0.74569
RegenerationR4	0.072	6.457	0.81539	0.99155
RegenerationR5	0.453	6.457	0.12226	0.52336
RegenerationR6	-0.184	6.457	0.53491	0.83004
RegenerationBL	-0.554	6.457	0.06282	0.29132
RegenerationTP	0.039	6.457	0.90150	1.00000

Genes with expression patterns similar to MligTC455_46203

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_46203	3770	78.55	Mlig455_049752	Neo: - Age: - Region-enriched R7: 1.760/0.00000	CALU	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_049752 {REF} {Length: 2079} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=66.3]; EF-hand domain pair [PF13499.8, score=58.7]; EF hand [PF13202.8, score=57.6]; EF-hand domain [PF13405.8, score=49.2]; EF-hand domain pair [PF13833.8, score=37.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=29.0]} {Human: ENSG00000128595, CALU, calumenin, [RH, Score=283, Expect=6e-94]} {Mouse: ENSMUSG00000029767, Calu, calumenin, [RH, Score=281, Expect=1e-93]; ENSMUSG00000005973, Rcn1, reticulocalbin 1, [RH, Score=270, Expect=4e-89]} {Dmel: FBgn0025682, scf, supercoiling factor, [RH, Score=262, Expect=4e-86]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [RH, Score=246, Expect=3e-80]} {Smed: dd_Smed_v6_1417_0_1, dd_Smed_v6_1417_0_1, [RH, Score=291, Expect=4e-98]} {RNA1509_17778, RNA1509_19441, RNA1509_22170, RNA1509_3183, RNA1509_53504, RNA1509_8953} {RNA1310_12875, RNA1509_17778, RNA1509_19441, RNA1509_22170, RNA1509_3183, RNA1509_53504, RNA1509_8953} {RNA1509_17778, RNA1509_19441, RNA1509_22170, RNA1509_3183, RNA1509_53504, RNA1509_8953, RNA815_4462.2}
2.	MligTC455_16732	2081	43.35	Mlig455_021727	Neo: - Age: -	CYB561	2.627	-	-	-	0.956	0.777	0.894	Mlig455_021727 {REF} {Length: 1361} {TRANSSPLICED} {Pfam: Eukaryotic cytochrome b561 [PF03188.18, score=142.3]} {Human: ENSG00000008283, CYB561, cytochrome b561, [RH, Score=182, Expect=2e-56]} {Mouse: ENSMUSG00000019590, Cyb561, cytochrome b-561, [RH, Score=173, Expect=2e-53]} {Dmel: FBgn0035321, CG1275, [Score=173, Expect=1e-53]} {Celegans: WBGene00010131, F55H2.5, Putative cytochrome b561, [Score=156, Expect=1e-46]} {Smed: dd_Smed_v6_4017_0_1, dd_Smed_v6_4017_0_1, [Score=174, Expect=4e-54]} {RNA1509_24022, RNA1509_33662, RNA1509_4623, RNA1509_51630} {RNA1310_20415.2, RNA1509_24022, RNA1509_33662, RNA1509_4623, RNA1509_51630} {RNA1509_24022, RNA1509_33662, RNA1509_4623, RNA1509_51630, RNA815_11404}
3.	MligTC455_16731	2084	43.42	Mlig455_021681	Neo: - Age: -	CYB561	2.619	-	-	-	0.958	0.765	0.896	Mlig455_021681 {REF} {Length: 1741} {TRANSSPLICED} {Pfam: Eukaryotic cytochrome b561 [PF03188.18, score=64.9]} {Human: ENSG00000008283, CYB561, cytochrome b561, [Score=92.0, Expect=3e-24]} {Mouse: ENSMUSG00000019590, Cyb561, cytochrome b-561, [Score=84.3, Expect=4e-21]} {Dmel: FBgn0035321, CG1275, [Score=90.1, Expect=7e-23]} {Celegans: WBGene00010131, F55H2.5, Putative cytochrome b561, [Score=102, Expect=2e-27]} {Smed: dd_Smed_v6_4017_0_1, dd_Smed_v6_4017_0_1, [Score=97.4, Expect=8e-26]} {RNA1509_4623} {RNA1310_20415.2} {RNA815_11404}
4.	MligTC455_43576	2054	42.79	Mlig455_063200	Neo: - Age: Down-Up-Up	AL031281.2	1.685	-	-	-	0.953	0.732	-	Mlig455_063200 {REF} {Length: 2790} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=66.1]; ADP-ribosylation factor family [PF00025.23, score=27.8]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.1]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [RH, Score=335, Expect=2e-118]; ENSG00000070831, CDC42, cell division cycle 42, [RH, Score=335, Expect=2e-118]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [RH, Score=335, Expect=1e-118]} {Dmel: FBgn0010341, Cdc42, [RH, Score=337, Expect=2e-119]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [RH, Score=326, Expect=2e-115]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [RH, Score=325, Expect=6e-115]} {RNA1509_12280, RNA1509_33799, RNA1509_4460, RNA1509_47178} {RNA1310_22711, RNA1509_12280, RNA1509_33799, RNA1509_4460, RNA1509_47178} {RNA1509_12280, RNA1509_33799, RNA1509_4460, RNA1509_47178, RNA815_7681.1}
5.	MligTC455_48710	1056	22.01	Mlig455_041821	Neo: Int S/G2/M Age: Down-Up-Up Region-enriched R5: 1.886/0.00000 Region-enriched R4: 1.348/0.00643	MRPL40	0.961	-	-	-	0.961	-	-	Mlig455_041821 {REF} {Length: 1102} {TRANSSPLICED} {Pfam: Mitochondrial ribosomal protein L28 [PF09812.11, score=90.3]} {Human: ENSG00000185608, MRPL40, mitochondrial ribosomal protein L40, [RH, Score=47.8, Expect=2e-06]} {Mouse: ENSMUSG00000022706, Mrpl40, mitochondrial ribosomal protein L40, [RH, Score=72.8, Expect=1e-15]} {Dmel: FBgn0037892, mRpL40, mitochondrial ribosomal protein L40, [RH, Score=92.8, Expect=2e-23]} {Smed: dd_Smed_v6_2475_0_1, dd_Smed_v6_2475_0_1, [RH, Score=95.1, Expect=2e-24]} {RNA1509_10286, RNA1509_29012} {RNA1310_40438, RNA1509_10286, RNA1509_29012} {RNA1509_10286, RNA1509_29012, RNA815_21548}
6.	MligTC455_45441	2601	54.19	Mlig455_064123	Neo: - Age: -	NFE2L1	0.956	-	-	-	-	0.956	-	Mlig455_064123 {REF} {Length: 4147} {TRANSSPLICED} {Pfam: bZIP Maf transcription factor [PF03131.19, score=33.6]} {Human: ENSG00000082641, NFE2L1, nuclear factor, erythroid 2 like 1, [RH, Score=88.2, Expect=1e-17]} {Mouse: ENSMUSG00000038615, Nfe2l1, nuclear factor, erythroid derived 2,-like 1, [RH, Score=88.2, Expect=1e-17]} {Dmel: FBgn0262975, cnc, cap-n-collar, [RH, Score=83.6, Expect=3e-16]} {RNA1509_38526, RNA1509_4470, RNA1509_53089} {RNA1310_13206, RNA1509_38526, RNA1509_4470, RNA1509_53089} {RNA1509_38526, RNA1509_4470, RNA1509_53089, RNA815_4901}
7.	MligTC455_20219	1411	29.39	Mlig455_035780	Neo: - Age: logFC(26M/2M)=0.339	SMAP2	0.955	-	-	-	-	-	0.955	Mlig455_035780 {REF} {Length: 3407} {TRANSSPLICED} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=134.1]} {Human: ENSG00000084070, SMAP2, small ArfGAP2, [RH, Score=178, Expect=5e-50]; ENSG00000112305, SMAP1, small ArfGAP 1, [RH, Score=178, Expect=5e-50]} {Mouse: ENSMUSG00000032870, Smap2, small ArfGAP 2, [RH, Score=178, Expect=2e-50]; ENSMUSG00000026155, Smap1, small ArfGAP 1, [RH, Score=176, Expect=2e-49]} {Dmel: FBgn0033349, CG8243, [RH, Score=219, Expect=7e-65]} {Celegans: WBGene00012359, W09D10.1, [RH, Score=196, Expect=1e-56]} {Smed: dd_Smed_v6_2542_0_1, dd_Smed_v6_2542_0_1, [RH, Score=226, Expect=3e-69]} {RNA1509_10562, RNA1509_18349, RNA1509_34100, RNA1509_52507} {RNA1310_2172.1, RNA1509_18349, RNA1509_34100, RNA1509_52507} {RNA1509_18349, RNA1509_34100, RNA1509_52507, RNA815_11714.1}
8.	MligTC455_24981	443	9.22	Mlig455_034757	Neo: Int S/G2/M Age: -	TRAPPC1	0.955	-	-	-	0.955	-	-	Mlig455_034757 {REF} {Length: 1226} {TRANSSPLICED} {Pfam: Sybindin-like family [PF04099.14, score=79.5]} {Human: ENSG00000170043, TRAPPC1, trafficking protein particle complex 1, [Score=112, Expect=9e-32]} {Mouse: ENSMUSG00000049299, Trappc1, trafficking protein particle complex 1, [Score=113, Expect=3e-32]} {Dmel: FBgn0260860, Bet5, Blocked early in transport 5, [Score=92.0, Expect=6e-24]} {Celegans: WBGene00077643, trpp-1, TRansport Protein Particle, [Score=62.4, Expect=9e-13]} {Smed: dd_Smed_v6_9403_0_1, dd_Smed_v6_9403_0_1, [Score=82.0, Expect=4e-20]} {RNA1509_19822} {RNA1310_25160.1, RNA1509_19822} {RNA1509_19822, RNA815_14862}
9.	MligTC455_11859	540	11.24	Mlig455_013374	Neo: - Age: - Region-enriched R4: 2.879/0.00002		0.953	-	-	-	0.953	-	-	Mlig455_013374 {REF} {Length: 1403} {tRNA: Val(CAC),pseudo, score=31.9} {RNA1509_27871} {RNA1310_58027} {RNA815_42512}

Berezikov Lab - 2020-2021 © ERIBA