M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46208

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46208 626 13.03 Mlig455_033857

Neo: -

Age: -

 PGM2 Mlig455_033857 {REF} {Length: 2753} {TRANSSPLICED} {Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I [PF02878.18, score=138.7]; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II [PF02879.18, score=83.8]; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III [PF02880.18, score=49.9]} {Human: ENSG00000169299, PGM2, phosphoglucomutase 2, [RH, Score=526, Expect=1e-180]} {Mouse: ENSMUSG00000029171, Pgm2, phosphoglucomutase 2, [RH, Score=520, Expect=2e-178]; ENSMUSG00000030729, Pgm2l1, phosphoglucomutase 2-like 1, [RH, Score=501, Expect=3e-171]} {Dmel: FBgn0033377, Pmm45A, Phosphomannomutase 45A, [RH, Score=472, Expect=9e-160]} {Celegans: WBGene00012803, Y43F4B.5, [RH, Score=459, Expect=2e-155]} {Smed: dd_Smed_v6_4058_0_1, dd_Smed_v6_4058_0_1, [RH, Score=496, Expect=5e-170]} {RNA1509_52307, RNA1509_7220} {RNA1310_13819, RNA1509_52307, RNA1509_7220} {RNA1509_52307, RNA1509_7220, RNA815_2808}

Cumulative graph for MligTC455_46208

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.158 4.033 0.88074 1.00000
RegionR2 -0.162 4.033 0.75805 1.00000
RegionR3 0.437 4.033 0.28587 0.82793
RegionR4 0.23 4.033 0.63355 0.94140
RegionR5 0.555 4.033 0.14126 0.38732
RegionR6 0.336 4.033 0.43373 0.99570
RegionR7 -0.961 4.033 0.09248 0.58189
RegionR8 -0.277 4.033 0.64730 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.598 4.033 0.12385 0.85377
RegenerationR2 0.198 4.033 0.67985 0.94890
RegenerationR3 -0.15 4.033 0.76586 0.96985
RegenerationR4 0.346 4.033 0.49498 0.86714
RegenerationR5 0.098 4.033 0.83319 0.99852
RegenerationR6 -0.129 4.033 0.80335 0.97896
RegenerationBL -0.049 4.033 0.93608 1.00000
RegenerationTP 1.008 4.033 0.10102 0.49386


Genes with expression patterns similar to MligTC455_46208

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46208 626 13.03 Mlig455_033857

Neo: -

Age: -

 PGM2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_033857 {REF} {Length: 2753} {TRANSSPLICED} {Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I [PF02878.18, score=138.7]; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II [PF02879.18, score=83.8]; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III [PF02880.18, score=49.9]} {Human: ENSG00000169299, PGM2, phosphoglucomutase 2, [RH, Score=526, Expect=1e-180]} {Mouse: ENSMUSG00000029171, Pgm2, phosphoglucomutase 2, [RH, Score=520, Expect=2e-178]; ENSMUSG00000030729, Pgm2l1, phosphoglucomutase 2-like 1, [RH, Score=501, Expect=3e-171]} {Dmel: FBgn0033377, Pmm45A, Phosphomannomutase 45A, [RH, Score=472, Expect=9e-160]} {Celegans: WBGene00012803, Y43F4B.5, [RH, Score=459, Expect=2e-155]} {Smed: dd_Smed_v6_4058_0_1, dd_Smed_v6_4058_0_1, [RH, Score=496, Expect=5e-170]} {RNA1509_52307, RNA1509_7220} {RNA1310_13819, RNA1509_52307, RNA1509_7220} {RNA1509_52307, RNA1509_7220, RNA815_2808}
2. MligTC455_35099 2100 43.74 Mlig455_018503

Neo: -

Age: Down-Down-Up

 FKBP2 1.883 - - 0.917 - - 0.966 Mlig455_018503 {REF} {Length: 1379} {TRANSSPLICED} {Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase [PF00254.30, score=117.7]} {Human: ENSG00000173486, FKBP2, FK506 binding protein 2, [RH, Score=165, Expect=1e-52]} {Mouse: ENSMUSG00000056629, Fkbp2, FK506 binding protein 2, [RH, Score=166, Expect=3e-53]} {Dmel: FBgn0010470, Fkbp14, FK506-binding protein 14, [RH, Score=137, Expect=4e-41]} {Celegans: WBGene00001426, fkb-1, Peptidylprolyl isomerase, [RH, Score=163, Expect=2e-52]} {Smed: dd_Smed_v6_1536_0_1, dd_Smed_v6_1536_0_1, [RH, Score=173, Expect=2e-56]} {RNA1509_27564} {RNA1310_35669.1, RNA1509_27564} {RNA1509_27564, RNA815_16576}
3. MligTC455_35100 2141 44.6 Mlig455_065163

Neo: Int S/G2/M

Age: -

 FKBP2 1.877 - - 0.925 - - 0.952 Mlig455_065163 {REF} {Length: 1620} {TRANSSPLICED} {Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase [PF00254.30, score=120.9]} {Human: ENSG00000173486, FKBP2, FK506 binding protein 2, [RH, Score=164, Expect=2e-52]} {Mouse: ENSMUSG00000056629, Fkbp2, FK506 binding protein 2, [RH, Score=166, Expect=3e-53]} {Dmel: FBgn0010470, Fkbp14, FK506-binding protein 14, [RH, Score=137, Expect=3e-41]} {Celegans: WBGene00001426, fkb-1, Peptidylprolyl isomerase, [RH, Score=162, Expect=3e-52]} {Smed: dd_Smed_v6_1536_0_1, dd_Smed_v6_1536_0_1, [RH, Score=176, Expect=9e-58]} {RNA1509_46806, RNA1509_5393} {RNA1310_35669.1, RNA1509_46806, RNA1509_5393} {RNA1509_46806, RNA1509_5393, RNA815_16576}
4. MligTC455_22044 745 15.52 Mlig455_026320

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.414

Region-enriched R4: 1.232/0.02570

 ARL2BP 1.721 - - - 0.954 - 0.767 Mlig455_026320 {REF} {Length: 2260} {Pfam: The ARF-like 2 binding protein BART [PF11527.10, score=93.7]} {Human: ENSG00000102931, ARL2BP, ADP ribosylation factor like GTPase 2 binding protein, [RH, Score=118, Expect=2e-33]} {Mouse: ENSMUSG00000031776, Arl2bp, ADP-ribosylation factor-like 2 binding protein, [RH, Score=119, Expect=7e-34]} {Smed: dd_Smed_v6_6975_0_1, dd_Smed_v6_6975_0_1, [RH, Score=147, Expect=1e-44]} {RNA1509_8574} {RNA1310_26001, RNA1509_8574} {RNA1509_8574, RNA815_10256.1}
5. MligTC455_15616 879 18.31 Mlig455_001922

Neo: -

Age: -

 LEPROTL1 1.698 - - - 0.748 - 0.950 Mlig455_001922 {REF} {Length: 3020} {TRANSSPLICED} {Pfam: Vacuolar protein sorting 55 [PF04133.16, score=123.9]} {Human: ENSG00000104660, LEPROTL1, leptin receptor overlapping transcript like 1, [RH, Score=151, Expect=8e-48]; ENSG00000213625, LEPROT, leptin receptor overlapping transcript, [RH, Score=147, Expect=3e-46]} {Mouse: ENSMUSG00000035212, Leprot, leptin receptor overlapping transcript, [RH, Score=153, Expect=7e-49]; ENSMUSG00000031513, Leprotl1, leptin receptor overlapping transcript-like 1, [RH, Score=151, Expect=7e-48]} {Dmel: FBgn0050423, CG30423, [RH, Score=82.0, Expect=8e-21]} {Celegans: WBGene00016244, C30B5.2, Vacuolar protein sorting-associated protein 55 homolog, [RH, Score=122, Expect=1e-36]} {Smed: dd_Smed_v6_7026_0_1, dd_Smed_v6_7026_0_1, [RH, Score=144, Expect=2e-45]} {RNA1509_43244} {RNA1310_15087.1} {RNA815_20068}
6. MligTC455_51743 473 9.85 Mlig455_066181

Neo: -

Age: logFC(26M/2M)=-0.536

 1.692 - - - - 0.956 0.736 Mlig455_066181 {REF} {Length: 2582} {RNA1509_24668} {RNA1310_11745, RNA1509_24668} {RNA1509_24668, RNA815_6094}
7. MligTC455_46153 1093 22.78 Mlig455_033128

Neo: -

Age: -

 PPP2R5A 1.683 - - - 0.730 - 0.953 Mlig455_033128 {REF} {Length: 2343} {TRANSSPLICED} {Pfam: Protein phosphatase 2A regulatory B subunit (B56 family) [PF01603.22, score=583.2]} {Human: ENSG00000066027, PPP2R5A, protein phosphatase 2 regulatory subunit B'alpha, [RH, Score=674, Expect=0.0]; ENSG00000154001, PPP2R5E, protein phosphatase 2 regulatory subunit B'epsilon, [RH, Score=669, Expect=0.0]} {Mouse: ENSMUSG00000026626, Ppp2r5a, protein phosphatase 2, regulatory subunit B', alpha, [RH, Score=683, Expect=0.0]; ENSMUSG00000021051, Ppp2r5e, protein phosphatase 2, regulatory subunit B', epsilon, [RH, Score=668, Expect=0.0]} {Dmel: FBgn0027492, wdb, widerborst, [RH, Score=666, Expect=0.0]} {Celegans: WBGene00012348, pptr-1, Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1, [RH, Score=647, Expect=0.0]} {Smed: dd_Smed_v6_2613_0_4, dd_Smed_v6_2613_0_4, [RH, Score=718, Expect=0.0]} {RNA1509_14734, RNA1509_39615, RNA1509_52313, RNA1509_55474} {RNA1310_9707.1, RNA1509_39615, RNA1509_52313, RNA1509_55474} {RNA1509_39615, RNA1509_52313, RNA1509_55474, RNA815_3247.1}
8. MligTC455_11918 699 14.55 Mlig455_036173

Neo: -

Age: -

 ZDHHC2 0.974 - - - - - 0.974 Mlig455_036173 {REF} {Length: 2240} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=114.2]} {Human: ENSG00000104219, ZDHHC2, zinc finger DHHC-type containing 2, [RH, Score=288, Expect=8e-95]} {Mouse: ENSMUSG00000039470, Zdhhc2, zinc finger, DHHC domain containing 2, [RH, Score=290, Expect=6e-96]} {Dmel: FBgn0033474, CG1407, [RH, Score=275, Expect=2e-89]} {Celegans: WBGene00014075, dhhc-4, Zinc finger DHHC domain-containing protein 4, [RH, Score=204, Expect=2e-62]} {Smed: dd_Smed_v6_6233_0_1, dd_Smed_v6_6233_0_1, [RH, Score=259, Expect=4e-85]} {RNA1509_7705} {RNA1310_6792.1} {RNA815_2390.1}
9. MligTC455_36811 5077 105.77 Mlig455_009072, Mlig455_009087, Mlig455_058111

Neo: -

Age: -

 EIF4H 0.968 - - - - - 0.968

Mlig455_009072 {REF} {Length: 2686} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.0]} {Human: ENSG00000106682, EIF4H, eukaryotic translation initiation factor 4H, [Score=99.0, Expect=8e-24]} {Mouse: ENSMUSG00000040731, Eif4h, eukaryotic translation initiation factor 4H, [Score=101, Expect=6e-25]} {Dmel: FBgn0262734, eIF4H1, eukaryotic translation initiation factor 4H1, [Score=89.0, Expect=5e-20]} {Celegans: WBGene00011156, R09B3.3, [Score=47.0, Expect=6e-07]} {Smed: dd_Smed_v6_4137_0_1, dd_Smed_v6_4137_0_1, [RH, Score=117, Expect=9e-31]} {RNA1509_59418} {RNA1310_23392.1} {RNA815_343.1}

Mlig455_009087 {REF} {Length: 2504} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.2]} {Human: ENSG00000106682, EIF4H, eukaryotic translation initiation factor 4H, [Score=99.8, Expect=1e-24]} {Mouse: ENSMUSG00000040731, Eif4h, eukaryotic translation initiation factor 4H, [Score=102, Expect=7e-26]} {Dmel: FBgn0262734, eIF4H1, eukaryotic translation initiation factor 4H1, [Score=90.9, Expect=3e-21]} {Celegans: WBGene00011156, R09B3.3, [Score=45.4, Expect=1e-06]} {Smed: dd_Smed_v6_4137_0_1, dd_Smed_v6_4137_0_1, [RH, Score=117, Expect=2e-31]} {RNA1509_20638, RNA1509_42318} {RNA1310_23392.1, RNA1509_20638, RNA1509_42318} {RNA1509_20638, RNA1509_42318, RNA815_343.1}

Mlig455_058111 {REF} {Length: 2515} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.2]} {Human: ENSG00000106682, EIF4H, eukaryotic translation initiation factor 4H, [Score=99.4, Expect=2e-24]} {Mouse: ENSMUSG00000040731, Eif4h, eukaryotic translation initiation factor 4H, [Score=102, Expect=1e-25]} {Dmel: FBgn0262734, eIF4H1, eukaryotic translation initiation factor 4H1, [Score=89.7, Expect=1e-20]} {Celegans: WBGene00011156, R09B3.3, [Score=45.4, Expect=1e-06]} {Smed: dd_Smed_v6_4137_0_1, dd_Smed_v6_4137_0_1, [RH, Score=117, Expect=3e-31]} {RNA1509_20638, RNA1509_59418} {RNA1310_23392.1, RNA1509_59418} {RNA1509_59418, RNA815_343.1}
10. MligTC455_32608 378 7.88 Mlig455_047029

Neo: -

Age: -

 CSTF3 0.964 - - - - - 0.964 Mlig455_047029 {REF} {Length: 3606} {TRANSSPLICED} {Pfam: Suppressor of forked protein (Suf) [PF05843.16, score=264.1]} {Human: ENSG00000176102, CSTF3, cleavage stimulation factor subunit 3, [RH, Score=817, Expect=0.0]} {Mouse: ENSMUSG00000027176, Cstf3, cleavage stimulation factor, 3' pre-RNA, subunit 3, [RH, Score=817, Expect=0.0]} {Dmel: FBgn0003559, su(f), suppressor of forked, [RH, Score=741, Expect=0.0]} {Celegans: WBGene00006307, suf-1, SUppressor-of-Forked (Drosophila) homolog, [RH, Score=634, Expect=0.0]} {Smed: dd_Smed_v6_2751_0_1, dd_Smed_v6_2751_0_1, [RH, Score=852, Expect=0.0]} {RNA1509_46620, RNA1509_51439, RNA1509_6273} {RNA1310_9060, RNA1509_46620, RNA1509_51439} {RNA1509_46620, RNA1509_51439, RNA815_6112}
11. MligTC455_43414 776 16.17 Mlig455_046322

Neo: -

Age: -

 CDS2 0.96 - - - - - 0.960 Mlig455_046322 {REF} {Length: 3285} {Pfam: Cytidylyltransferase family [PF01148.22, score=272.9]} {Human: ENSG00000101290, CDS2, CDP-diacylglycerol synthase 2, [RH, Score=461, Expect=4e-160]; ENSG00000163624, CDS1, CDP-diacylglycerol synthase 1, [RH, Score=445, Expect=2e-153]} {Mouse: ENSMUSG00000058793, Cds2, CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2, [RH, Score=460, Expect=3e-160]; ENSMUSG00000029330, Cds1, CDP-diacylglycerol synthase 1, [RH, Score=446, Expect=2e-154]} {Dmel: FBgn0010350, CdsA, CDP diglyceride synthetase, [RH, Score=483, Expect=6e-169]} {Celegans: WBGene00016384, cdgs-1, Phosphatidate cytidylyltransferase, [RH, Score=439, Expect=8e-152]} {Smed: dd_Smed_v6_4856_0_2, dd_Smed_v6_4856_0_2, [RH, Score=556, Expect=0.0]} {RNA1509_36952, RNA1509_58742} {RNA1310_4672, RNA1509_58742} {RNA1509_58742, RNA815_3501}
12. MligTC455_24290 617 12.85 Mlig455_004537, Mlig455_028539

Neo: -

Age: -

 NFYB 0.957 - - - - - 0.957

Mlig455_004537 {REF} {Length: 2183} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=92.4]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=23.4]} {Human: ENSG00000120837, NFYB, nuclear transcription factor Y subunit beta, [RH, Score=157, Expect=2e-48]} {Mouse: ENSMUSG00000020248, Nfyb, nuclear transcription factor-Y beta, [RH, Score=157, Expect=1e-48]} {Dmel: FBgn0032816, Nf-YB, Nuclear factor Y-box B, [RH, Score=139, Expect=3e-42]} {Celegans: WBGene00021132, nfyb-1, Nuclear transcription Factor Y, B (Beta) subunit, [RH, Score=125, Expect=8e-35]} {Smed: dd_Smed_v6_2532_0_1, dd_Smed_v6_2532_0_1, [RH, Score=160, Expect=6e-50]} {RNA1509_13566, RNA1509_32024} {RNA1310_44394, RNA1509_32024} {RNA1509_32024, RNA815_16021}

Mlig455_028539 {REF} {Length: 2185} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=92.4]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=23.4]} {Human: ENSG00000120837, NFYB, nuclear transcription factor Y subunit beta, [RH, Score=157, Expect=2e-48]} {Mouse: ENSMUSG00000020248, Nfyb, nuclear transcription factor-Y beta, [RH, Score=157, Expect=1e-48]} {Dmel: FBgn0032816, Nf-YB, Nuclear factor Y-box B, [RH, Score=139, Expect=3e-42]} {Celegans: WBGene00021132, nfyb-1, Nuclear transcription Factor Y, B (Beta) subunit, [RH, Score=125, Expect=8e-35]} {Smed: dd_Smed_v6_2532_0_1, dd_Smed_v6_2532_0_1, [RH, Score=160, Expect=6e-50]} {RNA1509_13566} {RNA1310_44394, RNA1509_13566} {RNA1509_13566, RNA815_16021}
13. MligTC455_42110 2111 43.98 Mlig455_003488

Neo: -

Age: -

 PRDX4 0.956 - - - - - 0.956 Mlig455_003488 {REF} {Length: 1973} {Pfam: AhpC/TSA family [PF00578.23, score=125.2]; Redoxin [PF08534.12, score=53.1]; C-terminal domain of 1-Cys peroxiredoxin [PF10417.11, score=51.1]} {Human: ENSG00000123131, PRDX4, peroxiredoxin 4, [Score=323, Expect=2e-112]} {Mouse: ENSMUSG00000025289, Prdx4, peroxiredoxin 4, [Score=324, Expect=4e-113]} {Dmel: FBgn0040308, Jafrac2, Thioredoxin peroxidase 2, [Score=317, Expect=8e-111]} {Celegans: WBGene00006434, prdx-2, PeRoxireDoXin, [Score=266, Expect=1e-91]} {Smed: dd_Smed_v6_3414_0_1, dd_Smed_v6_3414_0_1, [Score=322, Expect=1e-112]} {RNA1509_16873} {RNA1310_13724} {RNA815_4645.1}
14. MligTC455_43367 8430 175.63 Mlig455_030055, Mlig455_030091, Mlig455_030154

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.199

 HINT1 0.955 - - - - - 0.955

Mlig455_030055 {REF} {Length: 650} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=96.7]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=72.8]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [RH, Score=179, Expect=2e-58]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [RH, Score=176, Expect=3e-57]} {Dmel: FBgn0031459, CG2862, [RH, Score=162, Expect=1e-51]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [RH, Score=167, Expect=4e-54]} {Smed: dd_Smed_v6_3055_0_1, dd_Smed_v6_3055_0_1, [RH, Score=193, Expect=3e-64]} {RNA1509_10253, RNA1509_10348, RNA1509_44196} {RNA1310_45963, RNA1509_10253, RNA1509_10348, RNA1509_44196} {RNA1509_10253, RNA1509_10348, RNA1509_44196, RNA815_28958.1}

Mlig455_030091 {REF} {Length: 645} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=96.7]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=72.8]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [RH, Score=179, Expect=2e-58]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [RH, Score=176, Expect=3e-57]} {Dmel: FBgn0031459, CG2862, [RH, Score=162, Expect=1e-51]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [RH, Score=167, Expect=4e-54]} {Smed: dd_Smed_v6_3055_0_1, dd_Smed_v6_3055_0_1, [RH, Score=194, Expect=3e-64]} {RNA1509_10253} {RNA1310_45963} {RNA815_28958.1}

Mlig455_030154 {REF} {Length: 629} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=96.7]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=72.8]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [RH, Score=179, Expect=2e-58]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [RH, Score=176, Expect=3e-57]} {Dmel: FBgn0031459, CG2862, [RH, Score=162, Expect=1e-51]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [RH, Score=167, Expect=4e-54]} {Smed: dd_Smed_v6_3055_0_1, dd_Smed_v6_3055_0_1, [RH, Score=194, Expect=3e-64]} {RNA1509_10253, RNA1509_15564} {RNA1310_45963, RNA1509_15564} {RNA1509_15564, RNA815_28958.1}
15. MligTC455_44202 781 16.28 Mlig455_025288

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.651

Region-enriched R4: 1.041/0.01600

 BCKDHA 0.955 - - - - - 0.955 Mlig455_025288 {REF} {Length: 2205} {TRANSSPLICED} {Pfam: Dehydrogenase E1 component [PF00676.22, score=305.3]; 1-deoxy-D-xylulose-5-phosphate synthase [PF13292.8, score=22.4]; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain [PF02775.23, score=21.2]} {Human: ENSG00000248098, BCKDHA, branched chain keto acid dehydrogenase E1, alpha polypeptide, [RH, Score=501, Expect=5e-176]; ENSG00000255730, AC011462.1, novel protein, [RH, Score=499, Expect=1e-174]} {Mouse: ENSMUSG00000060376, Bckdha, branched chain ketoacid dehydrogenase E1, alpha polypeptide, [RH, Score=503, Expect=4e-177]} {Dmel: FBgn0037709, CG8199, [RH, Score=458, Expect=9e-160]} {Celegans: WBGene00012713, bckd-1A, 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial, [RH, Score=481, Expect=6e-169]} {Smed: dd_Smed_v6_3288_0_1, dd_Smed_v6_3288_0_1, [RH, Score=488, Expect=7e-172]} {RNA1509_21323} {RNA1310_8924.1} {RNA815_7812}
16. MligTC455_51346 1159 24.15 Mlig455_069672

Neo: -

Age: Up-Down-Up

 PRDX5 0.954 - - - - - 0.954 Mlig455_069672 {REF} {Length: 1869} {TRANSSPLICED} {Pfam: Redoxin [PF08534.12, score=108.5]; AhpC/TSA family [PF00578.23, score=44.1]} {Human: ENSG00000126432, PRDX5, peroxiredoxin 5, [Score=132, Expect=8e-39]} {Mouse: ENSMUSG00000024953, Prdx5, peroxiredoxin 5, [Score=123, Expect=2e-35]} {Dmel: FBgn0038570, Prx5, Peroxiredoxin 5, [Score=139, Expect=4e-42]} {Smed: dd_Smed_v6_1290_0_1, dd_Smed_v6_1290_0_1, [Score=157, Expect=2e-49]} {RNA1509_41717, RNA1509_58546} {RNA1310_37609, RNA1509_41717, RNA1509_58546} {RNA1509_41717, RNA1509_58546, RNA815_25605}
17. MligTC455_45601 917 19.11 Mlig455_009807

Neo: -

Age: -

 SLC15A4 0.953 - - - - - 0.953 Mlig455_009807 {REF} {Length: 2847} {TRANSSPLICED} {Pfam: POT family [PF00854.23, score=234.1]} {Human: ENSG00000139370, SLC15A4, solute carrier family 15 member 4, [RH, Score=309, Expect=3e-96]} {Mouse: ENSMUSG00000029416, Slc15a4, solute carrier family 15, member 4, [RH, Score=305, Expect=8e-95]} {Celegans: WBGene00003877, pept-1, Peptide transporter family 1, [Score=77.4, Expect=2e-14]} {Smed: dd_Smed_v6_8178_0_1, dd_Smed_v6_8178_0_1, [RH, Score=254, Expect=9e-76]} {RNA1509_31535, RNA1509_42147} {RNA1310_3190.1, RNA1509_42147} {RNA1509_42147, RNA815_1889}
18. MligTC455_50713 1646 34.29 Mlig455_004991

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.627

Region-enriched R5: 1.244/0.00002
Region-enriched R4: 1.149/0.00387

 MAP1LC3C 0.952 - - - - - 0.952 Mlig455_004991 {REF} {Length: 1864} {TRANSSPLICED} {Pfam: Autophagy protein Atg8 ubiquitin like [PF02991.18, score=130.5]; Ubiquitin-like autophagy protein Apg12 [PF04110.15, score=20.0]} {Human: ENSG00000197769, MAP1LC3C, microtubule associated protein 1 light chain 3 gamma, [Score=150, Expect=4e-47]} {Mouse: ENSMUSG00000031812, Map1lc3b, microtubule-associated protein 1 light chain 3 beta, [Score=125, Expect=6e-38]; ENSMUSG00000027602, Map1lc3a, microtubule-associated protein 1 light chain 3 alpha, [Score=122, Expect=9e-37]} {Dmel: FBgn0052672, Atg8a, Autophagy-related 8a, [Score=98.6, Expect=2e-27]} {Celegans: WBGene00002981, lgg-2, [RH, Score=107, Expect=8e-31]} {Smed: dd_Smed_v6_1441_0_1, dd_Smed_v6_1441_0_1, [Score=104, Expect=9e-30]} {RNA1509_20665, RNA1509_27527, RNA1509_29537, RNA1509_44101} {RNA1310_32049.1, RNA1509_20665, RNA1509_27527, RNA1509_29537, RNA1509_44101} {RNA1509_20665, RNA1509_27527, RNA1509_29537, RNA1509_44101, RNA815_14707}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA