M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46272

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46272 271 5.65 Mlig455_040043

Neo: -

Age: -

 MPPE1 Mlig455_040043 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=38.9]; Calcineurin-like phosphoesterase superfamily domain [PF12850.9, score=24.4]} {Human: ENSG00000154889, MPPE1, metallophosphoesterase 1, [RH, Score=271, Expect=9e-88]} {Mouse: ENSMUSG00000062526, Mppe1, metallophosphoesterase 1, [RH, Score=263, Expect=2e-84]} {Dmel: FBgn0031997, PGAP5, Post-GPI attachment to proteins 5, [RH, Score=226, Expect=8e-71]} {Celegans: WBGene00015238, B0511.13, Metallophosphoesterase 1 homolog, [RH, Score=217, Expect=1e-67]} {Smed: dd_Smed_v6_12692_0_1, dd_Smed_v6_12692_0_1, [RH, Score=319, Expect=1e-106]} {RNA1509_29183, RNA1509_35739, RNA1509_46778} {RNA1310_17804, RNA1509_29183, RNA1509_35739, RNA1509_46778} {RNA1509_29183, RNA1509_35739, RNA1509_46778, RNA815_8589}

Cumulative graph for MligTC455_46272

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.421 3.026 0.38721 1.00000
RegionR2 0.336 3.026 0.72460 1.00000
RegionR3 0.261 3.026 0.74608 1.00000
RegionR4 1.593 3.026 0.12892 0.36327
RegionR5 1.152 3.026 0.17955 0.45582
RegionR6 0.426 3.026 0.65591 1.00000
RegionR7 0.089 3.026 0.83143 1.00000
RegionR8 0.563 3.026 0.63071 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.191 3.026 0.99993 1.00000
RegenerationR2 0.387 3.026 0.55163 0.89413
RegenerationR3 0.271 3.026 0.73115 0.95816
RegenerationR4 0.108 3.026 0.89680 1.00000
RegenerationR5 0.794 3.026 0.23541 0.66928
RegenerationR6 0.211 3.026 0.78198 0.96848
RegenerationBL 1.181 3.026 0.16058 0.48074
RegenerationTP -0.175 3.026 0.85681 1.00000


Genes with expression patterns similar to MligTC455_46272

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46272 271 5.65 Mlig455_040043

Neo: -

Age: -

 MPPE1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_040043 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=38.9]; Calcineurin-like phosphoesterase superfamily domain [PF12850.9, score=24.4]} {Human: ENSG00000154889, MPPE1, metallophosphoesterase 1, [RH, Score=271, Expect=9e-88]} {Mouse: ENSMUSG00000062526, Mppe1, metallophosphoesterase 1, [RH, Score=263, Expect=2e-84]} {Dmel: FBgn0031997, PGAP5, Post-GPI attachment to proteins 5, [RH, Score=226, Expect=8e-71]} {Celegans: WBGene00015238, B0511.13, Metallophosphoesterase 1 homolog, [RH, Score=217, Expect=1e-67]} {Smed: dd_Smed_v6_12692_0_1, dd_Smed_v6_12692_0_1, [RH, Score=319, Expect=1e-106]} {RNA1509_29183, RNA1509_35739, RNA1509_46778} {RNA1310_17804, RNA1509_29183, RNA1509_35739, RNA1509_46778} {RNA1509_29183, RNA1509_35739, RNA1509_46778, RNA815_8589}
2. MligTC455_39573 515 10.73 Mlig455_051292

Neo: Irradiation

Age: Up-Down-Down

 USP48 0.958 - - - - - 0.958 Mlig455_051292 {REF} {Length: 5556} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=111.1]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=37.6]; Ubiquitin family [PF00240.25, score=24.2]} {Human: ENSG00000090686, USP48, ubiquitin specific peptidase 48, [RH, Score=350, Expect=2e-102]} {Mouse: ENSMUSG00000043411, Usp48, ubiquitin specific peptidase 48, [RH, Score=354, Expect=2e-104]} {Dmel: FBgn0030366, Usp7, Ubiquitin-specific protease 7, [Score=112, Expect=1e-24]} {Celegans: WBGene00009267, usp-48, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=103, Expect=5e-22]} {Smed: dd_Smed_v6_12464_0_1, dd_Smed_v6_12464_0_1, [RH, Score=320, Expect=1e-92]} {RNA1509_27478, RNA1509_47041, RNA1509_9413} {RNA1310_2673.1, RNA1509_27478, RNA1509_47041, RNA1509_9413} {RNA1509_27478, RNA1509_47041, RNA1509_9413, RNA815_4818.1}
3. MligTC455_50930 72 1.49 Mlig455_004647, Mlig455_033044, Mlig455_053127, Mlig455_070976

Neo: -

Age: Up-Down-Up

 RBM12B 0.953 - - - - 0.953 -

Mlig455_004647 {REF} {Length: 374} {NoTransDecoderORF} {RNA1310_56858} {RNA815_51411}

Mlig455_033044 {REF} {Length: 378} {RNA1310_56858} {RNA815_51411}

Mlig455_053127 {REF} {Length: 1707} {Human: ENSG00000183808, RBM12B, RNA binding motif protein 12B, [Score=51.2, Expect=1e-06]; ENSG00000221843, C2orf16, chromosome 2 open reading frame 16, [Score=49.3, Expect=7e-06]} {Dmel: FBgn0029697, CG15570, [Score=58.5, Expect=3e-09]} {RNA1509_49895} {RNA1310_36074} {RNA815_51411}

Mlig455_070976 {REF} {Length: 385} {RNA1310_56858} {RNA815_51411}
4. MligTC455_16773 565 11.77 Mlig455_063533

Neo: -

Age: -

 ZRANB2 0.95 - - - - - 0.950 Mlig455_063533 {REF} {Length: 2907} {TRANSSPLICED} {Pfam: Zn-finger in Ran binding protein and others [PF00641.20, score=32.8]} {Human: ENSG00000132485, ZRANB2, zinc finger RANBP2-type containing 2, [RH, Score=117, Expect=4e-30]} {Mouse: ENSMUSG00000028180, Zranb2, zinc finger, RAN-binding domain containing 2, [RH, Score=117, Expect=3e-30]} {Dmel: FBgn0034750, CG3732, [RH, Score=104, Expect=8e-26]} {Celegans: WBGene00021295, Y25C1A.8, Zinc finger Ran-binding domain-containing protein 2, [RH, Score=98.6, Expect=3e-23]} {Smed: dd_Smed_v6_1397_0_1, dd_Smed_v6_1397_0_1, [RH, Score=145, Expect=2e-41]} {RNA1509_2133, RNA1509_39074, RNA1509_4616, RNA1509_47611, RNA1509_52132} {RNA1310_24426, RNA1509_2133, RNA1509_39074, RNA1509_4616, RNA1509_47611, RNA1509_52132} {RNA1509_2133, RNA1509_39074, RNA1509_4616, RNA1509_47611, RNA1509_52132, RNA815_12758}
5. MligTC455_31545 232 4.83 Mlig455_041002

Neo: -

Age: Down-Up-Down

Region-enriched R5: 1.739/0.02271

 OGFR 0.95 - - - - - 0.950 Mlig455_041002 {REF} {Length: 2334} {TRANSSPLICED} {Pfam: Opioid growth factor receptor (OGFr) conserved region [PF04664.15, score=196.5]} {Human: ENSG00000060491, OGFR, opioid growth factor receptor, [RH, Score=161, Expect=4e-47]; ENSG00000119900, OGFRL1, opioid growth factor receptor like 1, [RH, Score=157, Expect=3e-45]} {Mouse: ENSMUSG00000049401, Ogfr, opioid growth factor receptor, [RH, Score=171, Expect=4e-49]} {Smed: dd_Smed_v6_6170_0_2, dd_Smed_v6_6170_0_2, [RH, Score=139, Expect=3e-41]} {RNA1509_55857} {RNA1310_4693} {RNA815_18822}
6. MligTC455_40663 570 11.87 Mlig455_048915

Neo: -

Age: -

 KAT6B 0.95 - - - - - 0.950 Mlig455_048915 {REF} {Length: 4020} {TRANSSPLICED} {Pfam: MOZ/SAS family [PF01853.20, score=253.4]; MYST family zinc finger domain [PF17772.3, score=59.9]; PHD-finger [PF00628.31, score=53.7]} {Human: ENSG00000156650, KAT6B, lysine acetyltransferase 6B, [RH, Score=337, Expect=2e-96]; ENSG00000083168, KAT6A, lysine acetyltransferase 6A, [RH, Score=337, Expect=1e-96]; ENSG00000281813, KAT6B, lysine acetyltransferase 6B, [RH, Score=337, Expect=2e-96]} {Mouse: ENSMUSG00000031540, Kat6a, K(lysine) acetyltransferase 6A, [RH, Score=335, Expect=7e-96]; ENSMUSG00000021767, Kat6b, K(lysine) acetyltransferase 6B, [RH, Score=332, Expect=3e-95]} {Dmel: FBgn0034975, enok, enoki mushroom, [RH, Score=332, Expect=3e-95]} {Celegans: WBGene00045419, lsy-12, Histone acetyltransferase, [RH, Score=257, Expect=2e-70]} {Smed: dd_Smed_v6_5797_0_1, dd_Smed_v6_5797_0_1, [RH, Score=331, Expect=2e-95]} {RNA1509_14256} {RNA1310_3300, RNA1509_14256} {RNA1509_14256, RNA815_11349}
7. MligTC455_51946 322 6.71 Mlig455_039407

Neo: Int S/G2/M

Age: Down-Up-Up

 NUP54 0.95 - - 0.950 - - - Mlig455_039407 {REF} {Length: 2670} {TRANSSPLICED} {Pfam: Nucleoporin complex subunit 54 [PF13874.8, score=87.6]} {Human: ENSG00000138750, NUP54, nucleoporin 54, [RH, Score=234, Expect=9e-70]} {Mouse: ENSMUSG00000034826, Nup54, nucleoporin 54, [RH, Score=239, Expect=3e-71]} {Dmel: FBgn0033737, Nup54, Nucleoporin 54kD, [RH, Score=255, Expect=1e-76]} {Celegans: WBGene00003787, npp-1, Nuclear Pore complex Protein, [RH, Score=123, Expect=3e-29]} {Smed: dd_Smed_v6_10347_0_1, dd_Smed_v6_10347_0_1, [RH, Score=179, Expect=5e-49]} {RNA1509_26979} {RNA1310_8481.3, RNA1509_26979} {RNA1509_26979, RNA815_23256}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA