M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40663

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40663 570 11.87 Mlig455_048915

Neo: -

Age: -

 KAT6B Mlig455_048915 {REF} {Length: 4020} {TRANSSPLICED} {Pfam: MOZ/SAS family [PF01853.20, score=253.4]; MYST family zinc finger domain [PF17772.3, score=59.9]; PHD-finger [PF00628.31, score=53.7]} {Human: ENSG00000156650, KAT6B, lysine acetyltransferase 6B, [RH, Score=337, Expect=2e-96]; ENSG00000083168, KAT6A, lysine acetyltransferase 6A, [RH, Score=337, Expect=1e-96]; ENSG00000281813, KAT6B, lysine acetyltransferase 6B, [RH, Score=337, Expect=2e-96]} {Mouse: ENSMUSG00000031540, Kat6a, K(lysine) acetyltransferase 6A, [RH, Score=335, Expect=7e-96]; ENSMUSG00000021767, Kat6b, K(lysine) acetyltransferase 6B, [RH, Score=332, Expect=3e-95]} {Dmel: FBgn0034975, enok, enoki mushroom, [RH, Score=332, Expect=3e-95]} {Celegans: WBGene00045419, lsy-12, Histone acetyltransferase, [RH, Score=257, Expect=2e-70]} {Smed: dd_Smed_v6_5797_0_1, dd_Smed_v6_5797_0_1, [RH, Score=331, Expect=2e-95]} {RNA1509_14256} {RNA1310_3300, RNA1509_14256} {RNA1509_14256, RNA815_11349}

Cumulative graph for MligTC455_40663

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.056 3.955 0.45548 1.00000
RegionR2 0.644 3.955 0.19424 0.55133
RegionR3 -0.465 3.955 0.30846 0.84778
RegionR4 0.278 3.955 0.53451 0.85763
RegionR5 0.72 3.955 0.03773 0.15273
RegionR6 0.529 3.955 0.18969 0.75566
RegionR7 0.52 3.955 0.34281 0.97985
RegionR8 -1.17 3.955 0.21321 0.81716

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.028 3.955 0.98866 1.00000
RegenerationR2 0.321 3.955 0.33458 0.77038
RegenerationR3 0.962 3.955 0.02095 0.26360
RegenerationR4 -0.145 3.955 0.71613 0.95982
RegenerationR5 0.091 3.955 0.78590 0.98361
RegenerationR6 0.369 3.955 0.33106 0.67734
RegenerationBL 0.22 3.955 0.70691 1.00000
RegenerationTP -0.032 3.955 0.97007 1.00000


Genes with expression patterns similar to MligTC455_40663

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40663 570 11.87 Mlig455_048915

Neo: -

Age: -

 KAT6B 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_048915 {REF} {Length: 4020} {TRANSSPLICED} {Pfam: MOZ/SAS family [PF01853.20, score=253.4]; MYST family zinc finger domain [PF17772.3, score=59.9]; PHD-finger [PF00628.31, score=53.7]} {Human: ENSG00000156650, KAT6B, lysine acetyltransferase 6B, [RH, Score=337, Expect=2e-96]; ENSG00000083168, KAT6A, lysine acetyltransferase 6A, [RH, Score=337, Expect=1e-96]; ENSG00000281813, KAT6B, lysine acetyltransferase 6B, [RH, Score=337, Expect=2e-96]} {Mouse: ENSMUSG00000031540, Kat6a, K(lysine) acetyltransferase 6A, [RH, Score=335, Expect=7e-96]; ENSMUSG00000021767, Kat6b, K(lysine) acetyltransferase 6B, [RH, Score=332, Expect=3e-95]} {Dmel: FBgn0034975, enok, enoki mushroom, [RH, Score=332, Expect=3e-95]} {Celegans: WBGene00045419, lsy-12, Histone acetyltransferase, [RH, Score=257, Expect=2e-70]} {Smed: dd_Smed_v6_5797_0_1, dd_Smed_v6_5797_0_1, [RH, Score=331, Expect=2e-95]} {RNA1509_14256} {RNA1310_3300, RNA1509_14256} {RNA1509_14256, RNA815_11349}
2. MligTC455_35117 347 7.22 Mlig455_049394

Neo: -

Age: Up-Up-Down

 1.891 0.927 - - - 0.964 - Mlig455_049394 {REF} {Length: 2696} {NoTransDecoderORF} {RNA1509_26681} {RNA1310_40886, RNA1509_26681} {RNA1509_26681, RNA815_17792}
3. MligTC455_12229 199 4.14 Mlig455_036322

Neo: -

Age: -

 CAMSAP3 1.823 0.954 - - - - 0.869 Mlig455_036322 {REF} {Length: 8055} {TRANSSPLICED} {Pfam: Microtubule-binding calmodulin-regulated spectrin-associated [PF08683.13, score=139.5]} {Human: ENSG00000076826, CAMSAP3, calmodulin regulated spectrin associated protein family member 3, [Score=123, Expect=1e-27]; ENSG00000130559, CAMSAP1, calmodulin regulated spectrin associated protein 1, [Score=119, Expect=2e-26]} {Mouse: ENSMUSG00000044433, Camsap3, calmodulin regulated spectrin-associated protein family, member 3, [Score=123, Expect=8e-28]; ENSMUSG00000026933, Camsap1, calmodulin regulated spectrin-associated protein 1, [Score=119, Expect=3e-26]} {Dmel: FBgn0263197, Patronin, [Score=122, Expect=2e-27]} {Celegans: WBGene00004121, ptrn-1, Patronin (microtubule-binding protein) homolog, [Score=125, Expect=1e-30]} {Smed: dd_Smed_v6_7356_0_1, dd_Smed_v6_7356_0_1, [Score=158, Expect=8e-39]} {RNA1509_13577} {RNA1310_1488} {RNA815_13505}
4. MligTC455_39573 515 10.73 Mlig455_051292

Neo: Irradiation

Age: Up-Down-Down

 USP48 1.759 - - - 0.776 - 0.983 Mlig455_051292 {REF} {Length: 5556} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=111.1]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=37.6]; Ubiquitin family [PF00240.25, score=24.2]} {Human: ENSG00000090686, USP48, ubiquitin specific peptidase 48, [RH, Score=350, Expect=2e-102]} {Mouse: ENSMUSG00000043411, Usp48, ubiquitin specific peptidase 48, [RH, Score=354, Expect=2e-104]} {Dmel: FBgn0030366, Usp7, Ubiquitin-specific protease 7, [Score=112, Expect=1e-24]} {Celegans: WBGene00009267, usp-48, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=103, Expect=5e-22]} {Smed: dd_Smed_v6_12464_0_1, dd_Smed_v6_12464_0_1, [RH, Score=320, Expect=1e-92]} {RNA1509_27478, RNA1509_47041, RNA1509_9413} {RNA1310_2673.1, RNA1509_27478, RNA1509_47041, RNA1509_9413} {RNA1509_27478, RNA1509_47041, RNA1509_9413, RNA815_4818.1}
5. MligTC455_32859 280 5.83 Mlig455_055206

Neo: -

Age: -

 1.713 0.950 - - - - 0.763 Mlig455_055206 {REF} {Length: 1588} {TRANSSPLICED} {Pfam: Nucleolar and spindle-associated protein [PF16006.7, score=49.6]} {RNA1509_35887} {RNA1310_11141.1} {RNA815_19948}
6. MligTC455_28915 608 12.67 Mlig455_046419, Mlig455_046433

Neo: -

Age: -

 OSBP2 1.703 0.957 - - - - 0.746

Mlig455_046419 {REF} {Length: 5966} {Pfam: Oxysterol-binding protein [PF01237.20, score=429.2]} {Human: ENSG00000184792, OSBP2, oxysterol binding protein 2, [Score=467, Expect=2e-160]; ENSG00000110048, OSBP, oxysterol binding protein, [Score=452, Expect=9e-153]} {Mouse: ENSMUSG00000020435, Osbp2, oxysterol binding protein 2, [Score=459, Expect=2e-154]; ENSMUSG00000024687, Osbp, oxysterol binding protein, [Score=451, Expect=1e-152]} {Dmel: FBgn0020626, Osbp, Oxysterol binding protein, [Score=409, Expect=9e-137]} {Celegans: WBGene00012930, obr-1, Oxysterol-binding protein, [Score=445, Expect=4e-155]} {Smed: dd_Smed_v6_3268_0_1, dd_Smed_v6_3268_0_1, [Score=506, Expect=3e-173]} {RNA1509_42359, RNA1509_6609} {RNA1310_3665.1, RNA1509_42359, RNA1509_6609} {RNA1509_42359, RNA1509_6609, RNA815_3089.1}

Mlig455_046433 {REF} {Length: 4781} {TRANSSPLICED} {Pfam: Oxysterol-binding protein [PF01237.20, score=436.4]} {Human: ENSG00000184792, OSBP2, oxysterol binding protein 2, [RH, Score=505, Expect=2e-170]; ENSG00000110048, OSBP, oxysterol binding protein, [RH, Score=487, Expect=2e-161]} {Mouse: ENSMUSG00000020435, Osbp2, oxysterol binding protein 2, [RH, Score=495, Expect=2e-163]; ENSMUSG00000024687, Osbp, oxysterol binding protein, [RH, Score=486, Expect=3e-161]} {Dmel: FBgn0020626, Osbp, Oxysterol binding protein, [RH, Score=469, Expect=6e-155]} {Celegans: WBGene00012930, obr-1, Oxysterol-binding protein, [RH, Score=493, Expect=2e-164]} {Smed: dd_Smed_v6_3268_0_1, dd_Smed_v6_3268_0_1, [Score=561, Expect=0.0]} {RNA1509_6609} {RNA1310_3665.1} {RNA815_3089.1}
7. MligTC455_25406 153 3.2 Mlig455_023037

Neo: -

Age: -

 0.966 0.966 - - - - - Mlig455_023037 {REF} {Length: 3995} {RNA1509_22081, RNA1509_57656} {RNA1310_8282.1, RNA1509_57656} {RNA1509_57656, RNA815_10545.1}
8. MligTC455_43328 180 3.75 Mlig455_007116

Neo: -

Age: Up-Down-Down

Region-enriched R5: 2.390/0.01781

 SMURF1 0.961 0.961 - - - - - Mlig455_007116 {REF} {Length: 5151} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=302.6]; WW domain [PF00397.28, score=64.1]; C2 domain [PF00168.32, score=48.5]} {Human: ENSG00000198742, SMURF1, SMAD specific E3 ubiquitin protein ligase 1, [RH, Score=734, Expect=0.0]; ENSG00000284126, SMURF1, SMAD specific E3 ubiquitin protein ligase 1, [RH, Score=734, Expect=0.0]; ENSG00000108854, SMURF2, SMAD specific E3 ubiquitin protein ligase 2, [RH, Score=728, Expect=0.0]} {Mouse: ENSMUSG00000018363, Smurf2, SMAD specific E3 ubiquitin protein ligase 2, [RH, Score=729, Expect=0.0]} {Dmel: FBgn0259174, Nedd4, [Score=408, Expect=1e-131]} {Celegans: WBGene00022358, Y92H12A.2, E3 ubiquitin-protein ligase, [Score=400, Expect=1e-132]} {Smed: dd_Smed_v6_4374_0_1, dd_Smed_v6_4374_0_1, [Score=395, Expect=7e-128]} {RNA1509_42014} {RNA1310_6371, RNA1509_42014} {RNA1509_42014, RNA815_15558}
9. MligTC455_34036 334 6.96 Mlig455_035014

Neo: Irradiation

Age: Up-Down-Down

 0.959 - - - - - 0.959 Mlig455_035014 {REF} {Length: 2060} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_58079} {RNA1310_54260} {RNA815_28528}
10. MligTC455_29522 183 3.82 Mlig455_049326, Mlig455_049412

Neo: -

Age: -

 PRKAB1, PRKAB2 0.955 - - - - - 0.955

Mlig455_049326 {REF} {Length: 1543} {TRANSSPLICED} {Pfam: Glycogen recognition site of AMP-activated protein kinase [PF16561.7, score=96.3]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=22.3]; Carbohydrate-binding module 48 (Isoamylase N-terminal domain) [PF02922.20, score=21.0]} {Human: ENSG00000111725, PRKAB1, protein kinase AMP-activated non-catalytic subunit beta 1, [Score=95.5, Expect=4e-24]; ENSG00000131791, PRKAB2, protein kinase AMP-activated non-catalytic subunit beta 2, [Score=95.5, Expect=4e-24]} {Mouse: ENSMUSG00000029513, Prkab1, protein kinase, AMP-activated, beta 1 non-catalytic subunit, [Score=97.4, Expect=5e-25]; ENSMUSG00000038205, Prkab2, protein kinase, AMP-activated, beta 2 non-catalytic subunit, [Score=95.1, Expect=4e-24]} {Dmel: FBgn0260972, alc, alicorn, [Score=78.6, Expect=3e-18]} {Celegans: WBGene00010115, aakb-1, AMP-Activated Kinase Beta subunit, [Score=83.6, Expect=5e-20]} {Smed: dd_Smed_v6_4735_0_1, dd_Smed_v6_4735_0_1, [Score=105, Expect=4e-28]} {RNA1509_18723} {RNA1310_30146} {RNA815_15840}

Mlig455_049412 {REF} {Length: 5999} {TRANSSPLICED} {Pfam: Glycogen recognition site of AMP-activated protein kinase [PF16561.7, score=111.2]; 5'-AMP-activated protein kinase beta subunit, interaction domain [PF04739.17, score=89.0]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=21.0]; Carbohydrate-binding module 48 (Isoamylase N-terminal domain) [PF02922.20, score=20.1]} {Human: ENSG00000131791, PRKAB2, protein kinase AMP-activated non-catalytic subunit beta 2, [RH, Score=238, Expect=1e-77]; ENSG00000111725, PRKAB1, protein kinase AMP-activated non-catalytic subunit beta 1, [RH, Score=233, Expect=1e-75]} {Mouse: ENSMUSG00000038205, Prkab2, protein kinase, AMP-activated, beta 2 non-catalytic subunit, [RH, Score=238, Expect=1e-77]; ENSMUSG00000029513, Prkab1, protein kinase, AMP-activated, beta 1 non-catalytic subunit, [RH, Score=234, Expect=3e-76]} {Dmel: FBgn0260972, alc, alicorn, [RH, Score=201, Expect=4e-64]} {Celegans: WBGene00010115, aakb-1, AMP-Activated Kinase Beta subunit, [RH, Score=218, Expect=2e-70]} {Smed: dd_Smed_v6_4735_0_1, dd_Smed_v6_4735_0_1, [RH, Score=225, Expect=3e-72]} {RNA1509_1508, RNA1509_31776, RNA1509_57530} {RNA1310_7321.1, RNA1509_1508, RNA1509_57530} {RNA1509_1508, RNA1509_57530, RNA815_2521.1}
11. MligTC455_44468 517 10.76 Mlig455_060290, Mlig455_066805, Mlig455_066871

Neo: -

Age: logFC(26M/2M)=0.308

 0.953 - - - - - 0.953

Mlig455_060290 {REF} {Length: 2085} {TRANSSPLICED} {RNA1509_55004} {RNA1310_35134.1} {RNA815_42855}

Mlig455_066805 {REF} {Length: 2535} {TRANSSPLICED} {RNA1509_55004} {RNA1310_35134.1} {RNA815_42855}

Mlig455_066871 {REF} {Length: 1837} {TRANSSPLICED} {RNA1509_55004} {RNA1310_35134.1} {RNA815_42855}
12. MligTC455_07779 143 2.98 Mlig455_022087

Neo: -

Age: Up-Down-Up

 UBA3 0.951 0.951 - - - - - Mlig455_022087 {REF} {Length: 2132} {TRANSSPLICED} {Human: ENSG00000144744, UBA3, ubiquitin like modifier activating enzyme 3, [Score=114, Expect=3e-30]} {Mouse: ENSMUSG00000030061, Uba3, ubiquitin-like modifier activating enzyme 3, [Score=111, Expect=2e-29]} {Dmel: FBgn0263697, Uba3, Ubiquitin activating enzyme 3, [Score=104, Expect=4e-27]} {Celegans: WBGene00004341, rfl-1, NEDD8-activating enzyme E1 catalytic subunit, [Score=100, Expect=8e-26]} {Smed: dd_Smed_v6_5739_0_1, dd_Smed_v6_5739_0_1, [Score=118, Expect=2e-32]} {RNA1509_32078} {RNA1310_15788.2} {RNA815_7861}
13. MligTC455_07780 144 2.99 Mlig455_053625

Neo: -

Age: -

 UBA3 0.951 0.951 - - - - - Mlig455_053625 {REF} {Length: 2608} {TRANSSPLICED} {Pfam: ThiF family [PF00899.23, score=193.1]; E2 binding domain [PF08825.12, score=37.3]; Ubiquitin/SUMO-activating enzyme ubiquitin-like domain [PF14732.8, score=23.1]} {Human: ENSG00000144744, UBA3, ubiquitin like modifier activating enzyme 3, [RH, Score=441, Expect=5e-152]} {Mouse: ENSMUSG00000030061, Uba3, ubiquitin-like modifier activating enzyme 3, [RH, Score=438, Expect=2e-151]} {Dmel: FBgn0263697, Uba3, Ubiquitin activating enzyme 3, [RH, Score=379, Expect=2e-128]} {Celegans: WBGene00004341, rfl-1, NEDD8-activating enzyme E1 catalytic subunit, [RH, Score=372, Expect=6e-126]} {Smed: dd_Smed_v6_5739_0_1, dd_Smed_v6_5739_0_1, [RH, Score=426, Expect=2e-147]} {RNA1509_12385, RNA1509_32078} {RNA1310_15788.2, RNA1509_12385, RNA1509_32078} {RNA1509_12385, RNA1509_32078, RNA815_7861}
14. MligTC455_31545 232 4.83 Mlig455_041002

Neo: -

Age: Down-Up-Down

Region-enriched R5: 1.739/0.02271

 OGFR 0.951 - - - - - 0.951 Mlig455_041002 {REF} {Length: 2334} {TRANSSPLICED} {Pfam: Opioid growth factor receptor (OGFr) conserved region [PF04664.15, score=196.5]} {Human: ENSG00000060491, OGFR, opioid growth factor receptor, [RH, Score=161, Expect=4e-47]; ENSG00000119900, OGFRL1, opioid growth factor receptor like 1, [RH, Score=157, Expect=3e-45]} {Mouse: ENSMUSG00000049401, Ogfr, opioid growth factor receptor, [RH, Score=171, Expect=4e-49]} {Smed: dd_Smed_v6_6170_0_2, dd_Smed_v6_6170_0_2, [RH, Score=139, Expect=3e-41]} {RNA1509_55857} {RNA1310_4693} {RNA815_18822}
15. MligTC455_46272 271 5.65 Mlig455_040043

Neo: -

Age: -

 MPPE1 0.95 - - - - - 0.950 Mlig455_040043 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=38.9]; Calcineurin-like phosphoesterase superfamily domain [PF12850.9, score=24.4]} {Human: ENSG00000154889, MPPE1, metallophosphoesterase 1, [RH, Score=271, Expect=9e-88]} {Mouse: ENSMUSG00000062526, Mppe1, metallophosphoesterase 1, [RH, Score=263, Expect=2e-84]} {Dmel: FBgn0031997, PGAP5, Post-GPI attachment to proteins 5, [RH, Score=226, Expect=8e-71]} {Celegans: WBGene00015238, B0511.13, Metallophosphoesterase 1 homolog, [RH, Score=217, Expect=1e-67]} {Smed: dd_Smed_v6_12692_0_1, dd_Smed_v6_12692_0_1, [RH, Score=319, Expect=1e-106]} {RNA1509_29183, RNA1509_35739, RNA1509_46778} {RNA1310_17804, RNA1509_29183, RNA1509_35739, RNA1509_46778} {RNA1509_29183, RNA1509_35739, RNA1509_46778, RNA815_8589}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA