M. lignano Tomo-Seq
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Results for MligTC455_46334

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46334 651 13.55 Mlig455_048015

Neo: -

Age: Down-Up-Up

 HDAC4 Mlig455_048015 {REF} {Length: 3379} {TRANSSPLICED} {Pfam: Histone deacetylase domain [PF00850.21, score=283.8]} {Human: ENSG00000068024, HDAC4, histone deacetylase 4, [RH, Score=416, Expect=3e-130]; ENSG00000048052, HDAC9, histone deacetylase 9, [RH, Score=410, Expect=1e-128]; ENSG00000108840, HDAC5, histone deacetylase 5, [RH, Score=401, Expect=2e-124]; ENSG00000061273, HDAC7, histone deacetylase 7, [RH, Score=397, Expect=2e-124]} {Mouse: ENSMUSG00000026313, Hdac4, histone deacetylase 4, [RH, Score=414, Expect=5e-130]; ENSMUSG00000004698, Hdac9, histone deacetylase 9, [RH, Score=404, Expect=5e-126]; ENSMUSG00000022475, Hdac7, histone deacetylase 7, [RH, Score=402, Expect=4e-127]; ENSMUSG00000008855, Hdac5, histone deacetylase 5, [RH, Score=399, Expect=7e-124]} {Dmel: FBgn0041210, HDAC4, Histone deacetylase 4, [RH, Score=392, Expect=8e-121]} {Celegans: WBGene00001837, hda-4, Histone deacetylase 4, [RH, Score=379, Expect=9e-119]} {Smed: dd_Smed_v6_9385_0_1, dd_Smed_v6_9385_0_1, [RH, Score=446, Expect=3e-145]} {RNA1509_7849} {RNA1310_8518.1, RNA1509_7849} {RNA1509_7849, RNA815_10834}

Cumulative graph for MligTC455_46334

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.251 4.093 0.35247 0.99586
RegionR2 0.536 4.093 0.23437 0.60758
RegionR3 -0.202 4.093 0.61616 1.00000
RegionR4 0.463 4.093 0.31897 0.63535
RegionR5 0.738 4.093 0.02791 0.12302
RegionR6 -0.006 4.093 0.99036 1.00000
RegionR7 -0.405 4.093 0.44784 1.00000
RegionR8 0.126 4.093 0.82748 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.864 4.093 0.25538 0.96756
RegenerationR2 0.041 4.093 0.90201 1.00000
RegenerationR3 -0.14 4.093 0.73450 0.95913
RegenerationR4 -0.099 4.093 0.81349 0.99062
RegenerationR5 0.002 4.093 0.99528 1.00000
RegenerationR6 -0.337 4.093 0.43342 0.75988
RegenerationBL -0.198 4.093 0.70603 1.00000
RegenerationTP -0.154 4.093 0.77820 1.00000


Genes with expression patterns similar to MligTC455_46334

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46334 651 13.55 Mlig455_048015

Neo: -

Age: Down-Up-Up

 HDAC4 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_048015 {REF} {Length: 3379} {TRANSSPLICED} {Pfam: Histone deacetylase domain [PF00850.21, score=283.8]} {Human: ENSG00000068024, HDAC4, histone deacetylase 4, [RH, Score=416, Expect=3e-130]; ENSG00000048052, HDAC9, histone deacetylase 9, [RH, Score=410, Expect=1e-128]; ENSG00000108840, HDAC5, histone deacetylase 5, [RH, Score=401, Expect=2e-124]; ENSG00000061273, HDAC7, histone deacetylase 7, [RH, Score=397, Expect=2e-124]} {Mouse: ENSMUSG00000026313, Hdac4, histone deacetylase 4, [RH, Score=414, Expect=5e-130]; ENSMUSG00000004698, Hdac9, histone deacetylase 9, [RH, Score=404, Expect=5e-126]; ENSMUSG00000022475, Hdac7, histone deacetylase 7, [RH, Score=402, Expect=4e-127]; ENSMUSG00000008855, Hdac5, histone deacetylase 5, [RH, Score=399, Expect=7e-124]} {Dmel: FBgn0041210, HDAC4, Histone deacetylase 4, [RH, Score=392, Expect=8e-121]} {Celegans: WBGene00001837, hda-4, Histone deacetylase 4, [RH, Score=379, Expect=9e-119]} {Smed: dd_Smed_v6_9385_0_1, dd_Smed_v6_9385_0_1, [RH, Score=446, Expect=3e-145]} {RNA1509_7849} {RNA1310_8518.1, RNA1509_7849} {RNA1509_7849, RNA815_10834}
2. MligTC455_21441 560 11.67 Mlig455_014019

Neo: -

Age: Down-Down-Up

 HERC4 2.499 0.732 - 0.809 - 0.958 - Mlig455_014019 {REF} {Length: 3949} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=252.3]; Regulator of chromosome condensation (RCC1) repeat [PF00415.20, score=152.6]; Regulator of chromosome condensation (RCC1) repeat [PF13540.8, score=105.7]} {Human: ENSG00000148634, HERC4, HECT and RLD domain containing E3 ubiquitin protein ligase 4, [Score=525, Expect=1e-168]; ENSG00000138641, HERC3, HECT and RLD domain containing E3 ubiquitin protein ligase 3, [Score=508, Expect=4e-162]} {Mouse: ENSMUSG00000020064, Herc4, hect domain and RLD 4, [Score=547, Expect=3e-177]} {Dmel: FBgn0035207, Sherpa, SUMO-related HECT domain and RCC repeat protein for Toll pathway activation, [Score=543, Expect=6e-176]} {Celegans: WBGene00021685, herc-1, HECT and RCC domain E3 ubiquitin ligase, [Score=378, Expect=3e-114]} {Smed: dd_Smed_v6_8701_0_1, dd_Smed_v6_8701_0_1, [Score=474, Expect=8e-150]} {RNA1509_22692, RNA1509_29257} {RNA1310_3324, RNA1509_22692, RNA1509_29257} {RNA1509_22692, RNA1509_29257, RNA815_2324.1}
3. MligTC455_18012 527 10.98 Mlig455_059356

Neo: -

Age: -

 IQANK1 0.964 - - - - 0.964 - Mlig455_059356 {REF} {Length: 2135} {TRANSSPLICED} {Pfam: Ankyrin repeat [PF13606.8, score=35.6]; Ankyrin repeats (3 copies) [PF12796.9, score=35.1]; Ankyrin repeats (many copies) [PF13857.8, score=34.5]; Ankyrin repeat [PF00023.32, score=32.5]; Ankyrin repeats (many copies) [PF13637.8, score=28.5]; ATP-binding dynein motor region [PF12781.9, score=24.4]} {Human: ENSG00000203499, IQANK1, IQ motif and ankyrin repeat containing 1, [RH, Score=333, Expect=1e-106]} {Mouse: ENSMUSG00000102018, K230010J24Rik, RIKEN cDNA K230010J24 gene, [RH, Score=360, Expect=4e-117]} {Dmel: FBgn0031473, CG3104, [Score=68.2, Expect=4e-12]} {Celegans: WBGene00003196, mel-11, MEL-11, [Score=56.2, Expect=6e-08]} {Smed: dd_Smed_v6_15179_0_1, dd_Smed_v6_15179_0_1, [RH, Score=478, Expect=2e-163]} {RNA1509_13601, RNA1509_21987} {RNA1310_2155.2, RNA1509_13601, RNA1509_21987} {RNA1509_13601, RNA1509_21987, RNA815_44759}

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