M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46615

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46615 798 16.62 Mlig455_010462

Neo: -

Age: -

Region-enriched R4: 1.396/0.00876

 DLST Mlig455_010462 {REF} {Length: 3561} {Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain) [PF00198.25, score=253.1]; Biotin-requiring enzyme [PF00364.24, score=66.2]} {Human: ENSG00000119689, DLST, dihydrolipoamide S-succinyltransferase, [RH, Score=475, Expect=1e-165]} {Mouse: ENSMUSG00000004789, Dlst, dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex), [RH, Score=471, Expect=5e-164]} {Dmel: FBgn0037891, CG5214, [RH, Score=363, Expect=1e-121]} {Celegans: WBGene00020950, dlst-1, DihydroLipoamide S-SuccinylTransferase, [RH, Score=471, Expect=4e-164]} {Smed: dd_Smed_v6_1456_0_1, dd_Smed_v6_1456_0_1, [RH, Score=460, Expect=2e-160]} {RNA1509_11693, RNA1509_19368, RNA1509_28903, RNA1509_42953} {RNA1310_127, RNA1509_11693, RNA1509_19368, RNA1509_28903, RNA1509_42953} {RNA1509_11693, RNA1509_19368, RNA1509_28903, RNA1509_42953, RNA815_3576}

Cumulative graph for MligTC455_46615

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.956 4.338 0.31901 0.96870
RegionR2 -0.12 4.338 0.78728 1.00000
RegionR3 -0.284 4.338 0.45433 0.96523
RegionR4 1.396 4.338 0.00080 0.00876
RegionR5 0.583 4.338 0.07550 0.25130
RegionR6 -0.202 4.338 0.60487 1.00000
RegionR7 -1.567 4.338 0.01306 0.20261
RegionR8 -0.763 4.338 0.28386 0.91109

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.615 4.338 0.62016 1.00000
RegenerationR2 0.028 4.338 0.93699 1.00000
RegenerationR3 0.759 4.338 0.06186 0.42072
RegenerationR4 0.166 4.338 0.67402 0.94384
RegenerationR5 0.538 4.338 0.13429 0.54276
RegenerationR6 0.916 4.338 0.02773 0.20810
RegenerationBL 0.823 4.338 0.12653 0.42270
RegenerationTP 1.107 4.338 0.07284 0.43215


Genes with expression patterns similar to MligTC455_46615

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46615 798 16.62 Mlig455_010462

Neo: -

Age: -

Region-enriched R4: 1.396/0.00876

 DLST 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_010462 {REF} {Length: 3561} {Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain) [PF00198.25, score=253.1]; Biotin-requiring enzyme [PF00364.24, score=66.2]} {Human: ENSG00000119689, DLST, dihydrolipoamide S-succinyltransferase, [RH, Score=475, Expect=1e-165]} {Mouse: ENSMUSG00000004789, Dlst, dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex), [RH, Score=471, Expect=5e-164]} {Dmel: FBgn0037891, CG5214, [RH, Score=363, Expect=1e-121]} {Celegans: WBGene00020950, dlst-1, DihydroLipoamide S-SuccinylTransferase, [RH, Score=471, Expect=4e-164]} {Smed: dd_Smed_v6_1456_0_1, dd_Smed_v6_1456_0_1, [RH, Score=460, Expect=2e-160]} {RNA1509_11693, RNA1509_19368, RNA1509_28903, RNA1509_42953} {RNA1310_127, RNA1509_11693, RNA1509_19368, RNA1509_28903, RNA1509_42953} {RNA1509_11693, RNA1509_19368, RNA1509_28903, RNA1509_42953, RNA815_3576}
2. MligTC455_46614 679 14.15 Mlig455_010453

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.686/0.00157

 DLST 4.544 0.922 0.741 0.975 0.950 - 0.956 Mlig455_010453 {REF} {Length: 4028} {Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain) [PF00198.25, score=251.9]; Biotin-requiring enzyme [PF00364.24, score=64.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=26.9]} {Human: ENSG00000119689, DLST, dihydrolipoamide S-succinyltransferase, [RH, Score=482, Expect=7e-165]} {Mouse: ENSMUSG00000004789, Dlst, dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex), [RH, Score=481, Expect=2e-164]} {Dmel: FBgn0037891, CG5214, [RH, Score=362, Expect=5e-118]} {Celegans: WBGene00020950, dlst-1, DihydroLipoamide S-SuccinylTransferase, [RH, Score=466, Expect=4e-159]} {Smed: dd_Smed_v6_1456_0_1, dd_Smed_v6_1456_0_1, [RH, Score=461, Expect=2e-157]} {RNA1509_5150} {RNA1310_3834} {RNA815_3576}
3. MligTC455_46617 796 16.59 Mlig455_010474, Mlig455_061903

Neo: -

Age: Up-Down-Up

Region-enriched R4: 1.724/0.00062

 DLST 4.464 0.927 0.700 0.957 0.932 - 0.948

Mlig455_010474 {REF} {Length: 1473} {Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain) [PF00198.25, score=52.3]} {Human: ENSG00000119689, DLST, dihydrolipoamide S-succinyltransferase, [Score=87.4, Expect=2e-21]} {Mouse: ENSMUSG00000004789, Dlst, dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex), [Score=89.4, Expect=3e-22]} {Dmel: FBgn0037891, CG5214, [Score=81.6, Expect=1e-19]} {Celegans: WBGene00020950, dlst-1, DihydroLipoamide S-SuccinylTransferase, [Score=76.6, Expect=6e-18]} {Smed: dd_Smed_v6_1456_0_1, dd_Smed_v6_1456_0_1, [Score=87.0, Expect=7e-22]} {RNA1509_5150} {RNA1310_127} {RNA815_3576}

Mlig455_061903 {REF} {Length: 2592} {Pfam: 2-oxoacid dehydrogenases acyltransferase (catalytic domain) [PF00198.25, score=115.8]} {Human: ENSG00000119689, DLST, dihydrolipoamide S-succinyltransferase, [Score=176, Expect=3e-54]} {Mouse: ENSMUSG00000004789, Dlst, dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex), [Score=176, Expect=1e-54]} {Dmel: FBgn0037891, CG5214, [Score=164, Expect=1e-49]} {Celegans: WBGene00020950, dlst-1, DihydroLipoamide S-SuccinylTransferase, [Score=159, Expect=3e-48]} {Smed: dd_Smed_v6_1456_0_1, dd_Smed_v6_1456_0_1, [Score=160, Expect=9e-49]} {RNA1509_11693} {RNA1310_3834} {RNA815_15893}
4. MligTC455_54235 6425 133.86 Mlig455_005204

Neo: -

Age: logFC(26M/2M)=0.258

 1.684 - - - 0.961 - 0.723 Mlig455_005204 {REF} {Length: 1035} {TRANSSPLICED} {Pfam: Shadow of prion protein, neuroprotective [PF14999.8, score=20.7]} {RNA1509_1933} {RNA1310_32718} {RNA815_15584}
5. MligTC455_19620 4056 84.5 Mlig455_058379

Neo: -

Age: -

 GHITM 0.96 - - - 0.960 - - Mlig455_058379 {REF} {Length: 1356} {TRANSSPLICED} {Pfam: Inhibitor of apoptosis-promoting Bax1 [PF01027.22, score=152.9]} {Human: ENSG00000165678, GHITM, growth hormone inducible transmembrane protein, [RH, Score=247, Expect=1e-79]} {Mouse: ENSMUSG00000041028, Ghitm, growth hormone inducible transmembrane protein, [RH, Score=244, Expect=8e-79]} {Dmel: FBgn0030263, CG2076, [RH, Score=253, Expect=3e-82]} {Celegans: WBGene00019664, K11H12.8, [RH, Score=223, Expect=2e-70]} {Smed: dd_Smed_v6_754_0_1, dd_Smed_v6_754_0_1, [RH, Score=211, Expect=6e-66]} {RNA1509_3934, RNA1509_52748} {RNA1310_24357.2, RNA1509_3934, RNA1509_52748} {RNA1509_3934, RNA1509_52748, RNA815_10661}
6. MligTC455_36709 3794 79.04 Mlig455_059511

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.064/0.00002

 TXN2 0.956 - - - 0.956 - - Mlig455_059511 {REF} {Length: 986} {TRANSSPLICED} {Pfam: Thioredoxin [PF00085.22, score=66.7]} {Human: ENSG00000100348, TXN2, thioredoxin 2, [RH, Score=102, Expect=4e-27]} {Mouse: ENSMUSG00000005354, Txn2, thioredoxin 2, [RH, Score=100, Expect=4e-27]} {Dmel: FBgn0035334, CG8993, [RH, Score=81.3, Expect=2e-19]} {Celegans: WBGene00007099, trx-2, Probable thioredoxin-2, [Score=79.7, Expect=4e-19]} {Smed: dd_Smed_v6_872_0_1, dd_Smed_v6_872_0_1, [RH, Score=89.7, Expect=3e-23]} {RNA1509_7447, RNA1509_8127} {RNA1310_36313.1, RNA1509_7447} {RNA1509_7447, RNA815_10101.2}
7. MligTC455_41672 1000 20.83 Mlig455_043173

Neo: -

Age: -

Region-enriched R4: 1.280/0.01010
Region-enriched R5: 1.095/0.00356

 0.95 - - - 0.950 - - Mlig455_043173 {REF} {Length: 684} {TRANSSPLICED} {RNA1509_27070, RNA1509_8868} {RNA1310_46974, RNA1509_27070} {RNA1509_27070, RNA815_26361}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA