TomoSeq data search

Data search

Results for MligTC455_46643

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_46643

1063

22.15

Mlig455_059317, Mlig455_065184

Neo: -

Age: -

Region-enriched R5: 1.239/0.00091

ARHGAP15

Mlig455_059317 {REF} {Length: 3135} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=114.8]} {Human: ENSG00000075884, ARHGAP15, Rho GTPase activating protein 15, [Score=147, Expect=4e-38]; ENSG00000276836, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276907, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000159314, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]} {Mouse: ENSMUSG00000049744, Arhgap15, Rho GTPase activating protein 15, [Score=149, Expect=1e-38]; ENSMUSG00000034255, Arhgap27, Rho GTPase activating protein 27, [Score=142, Expect=2e-35]} {Dmel: FBgn0032821, CdGAPr, Cd GTPase activating protein-related, [Score=100, Expect=2e-21]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=139, Expect=1e-36]} {Smed: dd_Smed_v6_3975_0_1, dd_Smed_v6_3975_0_1, [Score=153, Expect=1e-39]} {RNA1509_27401} {RNA1310_16238} {RNA815_16832}

Mlig455_065184 {REF} {Length: 3123} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=114.8]} {Human: ENSG00000075884, ARHGAP15, Rho GTPase activating protein 15, [Score=147, Expect=4e-38]; ENSG00000159314, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276836, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276907, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]} {Mouse: ENSMUSG00000049744, Arhgap15, Rho GTPase activating protein 15, [Score=149, Expect=9e-39]} {Dmel: FBgn0032821, CdGAPr, Cd GTPase activating protein-related, [Score=99.8, Expect=2e-21]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=138, Expect=1e-36]} {Smed: dd_Smed_v6_3975_0_1, dd_Smed_v6_3975_0_1, [Score=153, Expect=1e-39]} {RNA1509_27401, RNA1509_47520} {RNA1310_16238, RNA1509_27401, RNA1509_47520} {RNA1509_27401, RNA1509_47520, RNA815_16832}

Cumulative graph for MligTC455_46643

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.126	4.776	0.27107	0.92157
RegionR2	-0.431	4.776	0.33461	0.72615
RegionR3	-0.431	4.776	0.24900	0.79264
RegionR4	0.46	4.776	0.26711	0.57166
RegionR5	1.239	4.776	0.00005	0.00091
RegionR6	0.457	4.776	0.18461	0.74992
RegionR7	-0.394	4.776	0.39276	1.00000
RegionR8	0.226	4.776	0.66160	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.945	4.776	0.10328	0.82244
RegenerationR2	0.056	4.776	0.88201	1.00000
RegenerationR3	0.218	4.776	0.59991	0.90785
RegenerationR4	-0.271	4.776	0.51213	0.87575
RegenerationR5	-0.381	4.776	0.29680	0.72428
RegenerationR6	-0.349	4.776	0.38965	0.72975
RegenerationBL	-0.186	4.776	0.67690	1.00000
RegenerationTP	0.078	4.776	0.87416	1.00000

Genes with expression patterns similar to MligTC455_46643

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_46643	1063	22.15	Mlig455_059317, Mlig455_065184	Neo: - Age: - Region-enriched R5: 1.239/0.00091	ARHGAP15	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_059317 {REF} {Length: 3135} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=114.8]} {Human: ENSG00000075884, ARHGAP15, Rho GTPase activating protein 15, [Score=147, Expect=4e-38]; ENSG00000276836, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276907, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000159314, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]} {Mouse: ENSMUSG00000049744, Arhgap15, Rho GTPase activating protein 15, [Score=149, Expect=1e-38]; ENSMUSG00000034255, Arhgap27, Rho GTPase activating protein 27, [Score=142, Expect=2e-35]} {Dmel: FBgn0032821, CdGAPr, Cd GTPase activating protein-related, [Score=100, Expect=2e-21]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=139, Expect=1e-36]} {Smed: dd_Smed_v6_3975_0_1, dd_Smed_v6_3975_0_1, [Score=153, Expect=1e-39]} {RNA1509_27401} {RNA1310_16238} {RNA815_16832} Mlig455_065184 {REF} {Length: 3123} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=114.8]} {Human: ENSG00000075884, ARHGAP15, Rho GTPase activating protein 15, [Score=147, Expect=4e-38]; ENSG00000159314, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276836, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276907, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]} {Mouse: ENSMUSG00000049744, Arhgap15, Rho GTPase activating protein 15, [Score=149, Expect=9e-39]} {Dmel: FBgn0032821, CdGAPr, Cd GTPase activating protein-related, [Score=99.8, Expect=2e-21]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=138, Expect=1e-36]} {Smed: dd_Smed_v6_3975_0_1, dd_Smed_v6_3975_0_1, [Score=153, Expect=1e-39]} {RNA1509_27401, RNA1509_47520} {RNA1310_16238, RNA1509_27401, RNA1509_47520} {RNA1509_27401, RNA1509_47520, RNA815_16832}
2.	MligTC455_47013	2279	47.48	Mlig455_026791, Mlig455_051804	Neo: Int S/G2/M Age: logFC(26M/2M)=0.221	SSSCA1	2.516	-	0.788	-	-	0.776	0.952	Mlig455_026791 {REF} {Length: 1046} {TRANSSPLICED} {Pfam: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) [PF06677.14, score=56.3]} {Human: ENSG00000173465, SSSCA1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=113, Expect=4e-31]} {Mouse: ENSMUSG00000079478, Sssca1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=112, Expect=1e-30]} {Celegans: WBGene00012643, Y39A1A.3, [RH, Score=50.1, Expect=1e-07]} {Smed: dd_Smed_v6_2060_0_1, dd_Smed_v6_2060_0_1, [RH, Score=82.8, Expect=3e-20]} {RNA1509_29657, RNA1509_39476} {RNA1310_30546, RNA1509_29657, RNA1509_39476} {RNA1509_29657, RNA1509_39476, RNA815_15417} Mlig455_051804 {REF} {Length: 1044} {TRANSSPLICED} {Pfam: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) [PF06677.14, score=56.3]} {Human: ENSG00000173465, SSSCA1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=113, Expect=4e-31]} {Mouse: ENSMUSG00000079478, Sssca1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=112, Expect=1e-30]} {Celegans: WBGene00012643, Y39A1A.3, [RH, Score=50.1, Expect=1e-07]} {Smed: dd_Smed_v6_2060_0_1, dd_Smed_v6_2060_0_1, [RH, Score=82.8, Expect=3e-20]} {RNA1509_14684, RNA1509_21618} {RNA1310_30546, RNA1509_14684, RNA1509_21618} {RNA1509_14684, RNA1509_21618, RNA815_15417}
3.	MligTC455_07731	1424	29.67	Mlig455_009815	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.273 Region-enriched R5: 1.342/0.00003	KRR1	1.873	-	-	-	-	0.907	0.966	Mlig455_009815 {REF} {Length: 1306} {TRANSSPLICED} {Pfam: Krr1 KH1 domain [PF17903.3, score=96.8]} {Human: ENSG00000111615, KRR1, KRR1, small subunit processome component homolog, [RH, Score=334, Expect=7e-113]} {Mouse: ENSMUSG00000063334, Krr1, KRR1, small subunit (SSU) processome component, homolog (yeast), [RH, Score=338, Expect=1e-114]} {Dmel: FBgn0020305, dbe, dribble, [RH, Score=317, Expect=8e-107]} {Celegans: WBGene00015461, C05C8.2, KRR1 small subunit processome component, [RH, Score=294, Expect=7e-98]} {Smed: dd_Smed_v6_3526_0_1, dd_Smed_v6_3526_0_1, [RH, Score=225, Expect=1e-71]} {RNA1509_11747, RNA1509_57395} {RNA1310_16639.1, RNA1509_57395} {RNA1509_57395, RNA815_11360}
4.	MligTC455_45264	453	9.43	Mlig455_066967	Neo: Int S/G2/M Age: - Region-enriched R5: 1.005/0.01959	ADAR	1.823	0.860	-	-	-	-	0.963	Mlig455_066967 {REF} {Length: 3553} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=89.7]} {Human: ENSG00000160710, ADAR, adenosine deaminase, RNA specific, [Score=86.7, Expect=8e-17]} {Mouse: ENSMUSG00000027951, Adar, adenosine deaminase, RNA-specific, [Score=77.4, Expect=4e-14]} {Celegans: WBGene00000079, adr-1, Adenosine Deaminase acting on RNA; Truncated ADR-1F, [Score=52.0, Expect=1e-06]} {Smed: dd_Smed_v6_4276_0_1, dd_Smed_v6_4276_0_1, [RH, Score=125, Expect=6e-30]} {RNA1509_24132, RNA1509_25663, RNA1509_36822, RNA1509_59600} {RNA1310_8055.1, RNA1509_24132, RNA1509_25663, RNA1509_36822, RNA1509_59600} {RNA1509_24132, RNA1509_25663, RNA1509_36822, RNA1509_59600, RNA815_19621}
5.	MligTC455_44310	882	18.38	Mlig455_027494	Neo: - Age: - Region-enriched R5: 1.619/0.00000	RPUSD1	1.737	-	-	-	0.774	-	0.963	Mlig455_027494 {REF} {Length: 1294} {TRANSSPLICED} {Pfam: RNA pseudouridylate synthase [PF00849.24, score=68.9]} {Human: ENSG00000007376, RPUSD1, RNA pseudouridylate synthase domain containing 1, [RH, Score=176, Expect=6e-52]} {Mouse: ENSMUSG00000041199, Rpusd1, RNA pseudouridylate synthase domain containing 1, [RH, Score=182, Expect=9e-55]} {Celegans: WBGene00019498, K07E8.7, Pseudouridine synthase, [Score=61.6, Expect=3e-10]} {Smed: dd_Smed_v6_10006_0_1, dd_Smed_v6_10006_0_1, [RH, Score=172, Expect=3e-51]} {RNA1509_43724} {RNA1310_19796.1} {RNA815_11339.1}
6.	MligTC455_18591	1024	21.33	Mlig455_001050	Neo: - Age: logFC(26M/2M)=0.197	VPS29	1.7	-	-	-	-	0.731	0.969	Mlig455_001050 {REF} {Length: 2720} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase superfamily domain [PF12850.9, score=89.4]; Calcineurin-like phosphoesterase [PF00149.30, score=26.6]} {Human: ENSG00000111237, VPS29, VPS29, retromer complex component, [RH, Score=276, Expect=2e-95]} {Mouse: ENSMUSG00000029462, Vps29, VPS29 retromer complex component, [RH, Score=278, Expect=7e-96]} {Dmel: FBgn0031310, Vps29, Vacuolar protein sorting 29, [RH, Score=257, Expect=4e-88]} {Celegans: WBGene00014234, vps-29, Vacuolar protein sorting-associated protein 29, [RH, Score=246, Expect=1e-83]} {Smed: dd_Smed_v6_1727_0_1, dd_Smed_v6_1727_0_1, [RH, Score=278, Expect=2e-96]} {RNA1509_15958, RNA1509_27578, RNA1509_29968, RNA1509_48195} {RNA1310_19709, RNA1509_15958, RNA1509_27578, RNA1509_29968, RNA1509_48195} {RNA1509_15958, RNA1509_27578, RNA1509_29968, RNA1509_48195, RNA815_19424.1}
7.	MligTC455_18958	792	16.49	Mlig455_042406	Neo: - Age: - Region-enriched R4: 1.734/0.00167	GEMIN2	0.975	-	-	-	-	-	0.975	Mlig455_042406 {REF} {Length: 3385} {Pfam: Survival motor neuron (SMN) interacting protein 1 (SIP1) [PF04938.14, score=147.2]} {Human: ENSG00000092208, GEMIN2, gem nuclear organelle associated protein 2, [RH, Score=89.4, Expect=1e-19]} {Mouse: ENSMUSG00000060121, Gemin2, gem nuclear organelle associated protein 2, [Score=104, Expect=4e-25]} {Celegans: WBGene00004886, smi-1, SMN (Survival of motor neuron) protein Interactor, [Score=60.5, Expect=3e-10]} {Smed: dd_Smed_v6_11175_0_4, dd_Smed_v6_11175_0_4, [Score=53.1, Expect=7e-08]} {RNA1509_43080} {RNA1310_28644, RNA1509_43080} {RNA1509_43080, RNA815_45784}
8.	MligTC455_46204	2724	56.75	Mlig455_052859	Neo: - Age: - Region-enriched R7: 1.647/0.00000	CALU	0.97	-	-	-	0.970	-	-	Mlig455_052859 {REF} {Length: 2144} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=65.7]; EF-hand domain pair [PF13499.8, score=58.4]; EF hand [PF13202.8, score=57.6]; EF-hand domain [PF13405.8, score=49.0]; EF-hand domain pair [PF13833.8, score=37.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=28.7]} {Human: ENSG00000128595, CALU, calumenin, [RH, Score=281, Expect=4e-93]; ENSG00000049449, RCN1, reticulocalbin 1, [RH, Score=268, Expect=4e-88]} {Mouse: ENSMUSG00000029767, Calu, calumenin, [RH, Score=280, Expect=8e-93]; ENSMUSG00000005973, Rcn1, reticulocalbin 1, [RH, Score=273, Expect=5e-90]} {Dmel: FBgn0025682, scf, supercoiling factor, [RH, Score=259, Expect=1e-84]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [RH, Score=249, Expect=5e-81]} {Smed: dd_Smed_v6_1417_0_1, dd_Smed_v6_1417_0_1, [RH, Score=291, Expect=8e-98]} {RNA1509_28226, RNA1509_3183} {RNA1310_12875, RNA1509_28226} {RNA1509_28226, RNA815_4462.1}
9.	MligTC455_19723	202	4.21	Mlig455_058537	Neo: - Age: Down-Up-Down		0.958	-	-	-	-	-	0.958	Mlig455_058537 {REF} {Length: 1456} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=29.2]} {RNA1509_28680} {RNA1310_35244} {RNA815_21002}
10.	MligTC455_48161	1255	26.14	Mlig455_012088	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.327 Region-enriched R5: 1.261/0.00011	MAPRE3	0.957	-	-	-	-	-	0.957	Mlig455_012088 {REF} {Length: 2891} {TRANSSPLICED} {Pfam: EB1-like C-terminal motif [PF03271.19, score=50.2]; Calponin homology (CH) domain [PF00307.33, score=46.7]} {Human: ENSG00000084764, MAPRE3, microtubule associated protein RP/EB family member 3, [RH, Score=260, Expect=6e-86]} {Mouse: ENSMUSG00000029166, Mapre3, microtubule-associated protein, RP/EB family, member 3, [RH, Score=259, Expect=7e-86]} {Dmel: FBgn0027066, Eb1, [RH, Score=281, Expect=2e-94]} {Celegans: WBGene00013344, ebp-1, Microtubule End Binding Protein, [RH, Score=239, Expect=2e-77]} {Smed: dd_Smed_v6_1322_0_2, dd_Smed_v6_1322_0_2, [RH, Score=323, Expect=7e-111]} {RNA1509_25290, RNA1509_32633, RNA1509_55630, RNA1509_5689} {RNA1310_26169.1, RNA1509_25290, RNA1509_32633, RNA1509_55630} {RNA1509_25290, RNA1509_32633, RNA1509_55630, RNA815_7966.2}
11.	MligTC455_53304	285	5.93	Mlig455_029251	Neo: Irradiation Age: Up-Down-Down	PKN2	0.955	-	-	-	-	-	0.955	Mlig455_029251 {REF} {Length: 5848} {Pfam: Protein kinase domain [PF00069.27, score=200.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=127.4]; Hr1 repeat [PF02185.18, score=53.6]; Protein kinase C terminal domain [PF00433.26, score=38.2]; Chromate resistance exported protein [PF09828.11, score=22.6]; Kinase-like [PF14531.8, score=21.8]} {Human: ENSG00000065243, PKN2, protein kinase N2, [RH, Score=577, Expect=0.0]} {Mouse: ENSMUSG00000004591, Pkn2, protein kinase N2, [RH, Score=573, Expect=0.0]} {Dmel: FBgn0020621, Pkn, Protein kinase N, [Score=466, Expect=1e-153]} {Celegans: WBGene00009793, pkn-1, Protein Kinase N (PKN) homolog, [RH, Score=449, Expect=5e-142]} {Smed: dd_Smed_v6_7015_0_1, dd_Smed_v6_7015_0_1, [RH, Score=334, Expect=2e-98]} {RNA1509_11806} {RNA1310_1971.1} {RNA815_4789}
12.	MligTC455_17086	636	13.26	Mlig455_010704	Neo: Int S/G2/M Age: logFC(26M/2M)=0.247 Region-enriched R5: 1.126/0.00025	NOMO2	0.95	-	-	-	-	-	0.950	Mlig455_010704 {REF} {Length: 5598} {Pfam: Carboxypeptidase regulatory-like domain [PF13620.8, score=132.7]; Prealbumin-like fold domain [PF17802.3, score=53.8]; SdrD B-like domain [PF17210.5, score=52.5]; Protein of unknown function (DUF2012) [PF09430.12, score=50.6]; CarboxypepD_reg-like domain [PF13715.8, score=34.6]; Domain of unknown function (DUF4198) [PF10670.11, score=25.1]; Protein of unknown function (DUF1416) [PF07210.14, score=23.1]; Polysaccharide lyase family 4, domain II [PF14686.8, score=18.7]} {Human: ENSG00000185164, NOMO2, NODAL modulator 2, [RH, Score=202, Expect=1e-52]; ENSG00000103226, NOMO3, NODAL modulator 3, [RH, Score=201, Expect=3e-52]; ENSG00000274779, NOMO1, NODAL modulator 1, [RH, Score=201, Expect=4e-52]; ENSG00000103512, NOMO1, NODAL modulator 1, [RH, Score=201, Expect=4e-52]; ENSG00000278087, NOMO3, NODAL modulator 3, [RH, Score=201, Expect=3e-52]} {Mouse: ENSMUSG00000030835, Nomo1, nodal modulator 1, [RH, Score=193, Expect=1e-49]} {Dmel: FBgn0033482, CG1371, [RH, Score=270, Expect=4e-75]} {Celegans: WBGene00015344, nra-4, Nicotinic Receptor Associated, [RH, Score=225, Expect=2e-60]} {Smed: dd_Smed_v6_3315_0_1, dd_Smed_v6_3315_0_1, [RH, Score=275, Expect=8e-77]} {RNA1509_3897} {RNA1310_2809.1} {RNA815_14760}

Berezikov Lab - 2020-2021 © ERIBA