M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44310

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44310 882 18.38 Mlig455_027494

Neo: -

Age: -

Region-enriched R5: 1.619/0.00000

 RPUSD1 Mlig455_027494 {REF} {Length: 1294} {TRANSSPLICED} {Pfam: RNA pseudouridylate synthase [PF00849.24, score=68.9]} {Human: ENSG00000007376, RPUSD1, RNA pseudouridylate synthase domain containing 1, [RH, Score=176, Expect=6e-52]} {Mouse: ENSMUSG00000041199, Rpusd1, RNA pseudouridylate synthase domain containing 1, [RH, Score=182, Expect=9e-55]} {Celegans: WBGene00019498, K07E8.7, Pseudouridine synthase, [Score=61.6, Expect=3e-10]} {Smed: dd_Smed_v6_10006_0_1, dd_Smed_v6_10006_0_1, [RH, Score=172, Expect=3e-51]} {RNA1509_43724} {RNA1310_19796.1} {RNA815_11339.1}

Cumulative graph for MligTC455_44310

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.648 4.49 0.43897 1.00000
RegionR2 -0.475 4.49 0.26227 0.64380
RegionR3 0.058 4.49 0.86228 1.00000
RegionR4 -0.107 4.49 0.77246 1.00000
RegionR5 1.619 4.49 0.00000 0.00000
RegionR6 0.147 4.49 0.67090 1.00000
RegionR7 0.004 4.49 0.99151 1.00000
RegionR8 -0.599 4.49 0.29943 0.92979

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.81 4.49 0.02599 0.60362
RegenerationR2 0.284 4.49 0.42169 0.82835
RegenerationR3 0.084 4.49 0.82329 0.98883
RegenerationR4 0.193 4.49 0.60503 0.91515
RegenerationR5 -0.742 4.49 0.02148 0.25346
RegenerationR6 0.059 4.49 0.87815 1.00000
RegenerationBL -0.21 4.49 0.65189 0.98842
RegenerationTP 0.494 4.49 0.30415 0.74943


Genes with expression patterns similar to MligTC455_44310

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44310 882 18.38 Mlig455_027494

Neo: -

Age: -

Region-enriched R5: 1.619/0.00000

 RPUSD1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_027494 {REF} {Length: 1294} {TRANSSPLICED} {Pfam: RNA pseudouridylate synthase [PF00849.24, score=68.9]} {Human: ENSG00000007376, RPUSD1, RNA pseudouridylate synthase domain containing 1, [RH, Score=176, Expect=6e-52]} {Mouse: ENSMUSG00000041199, Rpusd1, RNA pseudouridylate synthase domain containing 1, [RH, Score=182, Expect=9e-55]} {Celegans: WBGene00019498, K07E8.7, Pseudouridine synthase, [Score=61.6, Expect=3e-10]} {Smed: dd_Smed_v6_10006_0_1, dd_Smed_v6_10006_0_1, [RH, Score=172, Expect=3e-51]} {RNA1509_43724} {RNA1310_19796.1} {RNA815_11339.1}
2. MligTC455_52258 2456 51.16 Mlig455_016230, Mlig455_054257

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.255/0.00020

 2.718 - 0.961 0.859 - - 0.898

Mlig455_016230 {REF} {Length: 1175} {TRANSSPLICED} {Pfam: Organelle biogenesis, Muted-like protein [PF14942.8, score=67.3]} {RNA1509_30043, RNA1509_30385} {RNA1310_7030, RNA1509_30043, RNA1509_30385} {RNA1509_30043, RNA1509_30385, RNA815_16984}

Mlig455_054257 {REF} {Length: 965} {Pfam: Organelle biogenesis, Muted-like protein [PF14942.8, score=66.5]} {RNA1509_30385} {RNA1310_7030} {RNA815_16984}
3. MligTC455_07731 1424 29.67 Mlig455_009815

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.273

Region-enriched R5: 1.342/0.00003

 KRR1 2.604 - 0.924 - 0.728 - 0.952 Mlig455_009815 {REF} {Length: 1306} {TRANSSPLICED} {Pfam: Krr1 KH1 domain [PF17903.3, score=96.8]} {Human: ENSG00000111615, KRR1, KRR1, small subunit processome component homolog, [RH, Score=334, Expect=7e-113]} {Mouse: ENSMUSG00000063334, Krr1, KRR1, small subunit (SSU) processome component, homolog (yeast), [RH, Score=338, Expect=1e-114]} {Dmel: FBgn0020305, dbe, dribble, [RH, Score=317, Expect=8e-107]} {Celegans: WBGene00015461, C05C8.2, KRR1 small subunit processome component, [RH, Score=294, Expect=7e-98]} {Smed: dd_Smed_v6_3526_0_1, dd_Smed_v6_3526_0_1, [RH, Score=225, Expect=1e-71]} {RNA1509_11747, RNA1509_57395} {RNA1310_16639.1, RNA1509_57395} {RNA1509_57395, RNA815_11360}
4. MligTC455_24973 42 0.88 Mlig455_065756

Neo: -

Age: -

 1.74 - 0.956 - - - 0.784 Mlig455_065756 {REF} {Length: 759} {RNA1509_29619} {RNA1310_124411} {RNA815_54604}
5. MligTC455_22401 1443 30.06 Mlig455_004527, Mlig455_028528

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.957/0.00000

 MPV17L2 1.737 0.785 - - - - 0.952

Mlig455_004527 {REF} {Length: 1383} {TRANSSPLICED} {Pfam: Mpv17 / PMP22 family [PF04117.14, score=48.4]; Cd27 binding protein (Siva) [PF05458.14, score=47.1]} {Human: ENSG00000254858, MPV17L2, MPV17 mitochondrial inner membrane protein like 2, [Score=102, Expect=1e-25]} {Mouse: ENSMUSG00000111476, Mpv17l2, MPV17 mitochondrial membrane protein-like 2, [RH, Score=99.0, Expect=1e-24]; ENSMUSG00000035559, Mpv17l2, MPV17 mitochondrial membrane protein-like 2, [RH, Score=99.0, Expect=1e-24]} {Dmel: FBgn0030481, CG1662, [Score=112, Expect=3e-29]} {Celegans: WBGene00022744, ZK470.1, [Score=65.1, Expect=1e-12]} {Smed: dd_Smed_v6_8288_0_1, dd_Smed_v6_8288_0_1, [RH, Score=107, Expect=4e-28]} {RNA1509_27940} {RNA1310_31638} {RNA815_14591}

Mlig455_028528 {REF} {Length: 1386} {TRANSSPLICED} {Pfam: Mpv17 / PMP22 family [PF04117.14, score=48.4]; Cd27 binding protein (Siva) [PF05458.14, score=47.1]} {Human: ENSG00000254858, MPV17L2, MPV17 mitochondrial inner membrane protein like 2, [Score=102, Expect=1e-25]} {Mouse: ENSMUSG00000111476, Mpv17l2, MPV17 mitochondrial membrane protein-like 2, [RH, Score=99.0, Expect=1e-24]; ENSMUSG00000035559, Mpv17l2, MPV17 mitochondrial membrane protein-like 2, [RH, Score=99.0, Expect=1e-24]} {Dmel: FBgn0030481, CG1662, [Score=112, Expect=3e-29]} {Celegans: WBGene00022744, ZK470.1, [Score=65.1, Expect=1e-12]} {Smed: dd_Smed_v6_8288_0_1, dd_Smed_v6_8288_0_1, [RH, Score=107, Expect=4e-28]} {RNA1509_27940} {RNA1310_31638} {RNA815_14591}
6. MligTC455_46643 1063 22.15 Mlig455_059317, Mlig455_065184

Neo: -

Age: -

Region-enriched R5: 1.239/0.00091

 ARHGAP15 1.737 - - - 0.774 - 0.963

Mlig455_059317 {REF} {Length: 3135} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=114.8]} {Human: ENSG00000075884, ARHGAP15, Rho GTPase activating protein 15, [Score=147, Expect=4e-38]; ENSG00000276836, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276907, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000159314, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]} {Mouse: ENSMUSG00000049744, Arhgap15, Rho GTPase activating protein 15, [Score=149, Expect=1e-38]; ENSMUSG00000034255, Arhgap27, Rho GTPase activating protein 27, [Score=142, Expect=2e-35]} {Dmel: FBgn0032821, CdGAPr, Cd GTPase activating protein-related, [Score=100, Expect=2e-21]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=139, Expect=1e-36]} {Smed: dd_Smed_v6_3975_0_1, dd_Smed_v6_3975_0_1, [Score=153, Expect=1e-39]} {RNA1509_27401} {RNA1310_16238} {RNA815_16832}

Mlig455_065184 {REF} {Length: 3123} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=114.8]} {Human: ENSG00000075884, ARHGAP15, Rho GTPase activating protein 15, [Score=147, Expect=4e-38]; ENSG00000159314, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276836, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]; ENSG00000276907, ARHGAP27, Rho GTPase activating protein 27, [Score=141, Expect=1e-35]} {Mouse: ENSMUSG00000049744, Arhgap15, Rho GTPase activating protein 15, [Score=149, Expect=9e-39]} {Dmel: FBgn0032821, CdGAPr, Cd GTPase activating protein-related, [Score=99.8, Expect=2e-21]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=138, Expect=1e-36]} {Smed: dd_Smed_v6_3975_0_1, dd_Smed_v6_3975_0_1, [Score=153, Expect=1e-39]} {RNA1509_27401, RNA1509_47520} {RNA1310_16238, RNA1509_27401, RNA1509_47520} {RNA1509_27401, RNA1509_47520, RNA815_16832}
7. MligTC455_36413 686 14.29 Mlig455_027517

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.020/0.01741

 DDX10 1.682 - - - - 0.730 0.952 Mlig455_027517 {REF} {Length: 2377} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.1]; Helicase conserved C-terminal domain [PF00271.33, score=84.3]; Domain of unknown function (DUF4217) [PF13959.8, score=39.3]} {Human: ENSG00000178105, DDX10, DEAD-box helicase 10, [RH, Score=430, Expect=2e-138]} {Mouse: ENSMUSG00000053289, Ddx10, DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, [RH, Score=400, Expect=4e-127]} {Dmel: FBgn0030855, CG5800, [RH, Score=384, Expect=7e-122]} {Celegans: WBGene00021277, Y23H5B.6, RNA helicase, [RH, Score=412, Expect=1e-133]} {Smed: dd_Smed_v6_10133_0_1, dd_Smed_v6_10133_0_1, [Score=268, Expect=2e-81]} {RNA1509_10762, RNA1509_41952} {RNA1310_8808, RNA1509_41952} {RNA1509_41952, RNA815_3348.1}
8. MligTC455_32712 35891 747.73 Mlig455_006504

Neo: Germline

Age: Down-Up-Down

 WBP2NL 0.971 - 0.971 - - - - Mlig455_006504 {REF} {Length: 1205} {Human: ENSG00000183066, WBP2NL, WBP2 N-terminal like, [RH, Score=54.7, Expect=3e-08]} {Mouse: ENSMUSG00000022455, Wbp2nl, WBP2 N-terminal like, [Score=59.3, Expect=1e-09]} {RNA1509_47} {RNA1310_34773.1} {RNA815_15363.2}
9. Mlig999032.1 0.966 - - - - 0.966 -
10. Mlig999007.1 0.964 - 0.964 - - - -
11. MligTC455_18958 792 16.49 Mlig455_042406

Neo: -

Age: -

Region-enriched R4: 1.734/0.00167

 GEMIN2 0.961 - - - - - 0.961 Mlig455_042406 {REF} {Length: 3385} {Pfam: Survival motor neuron (SMN) interacting protein 1 (SIP1) [PF04938.14, score=147.2]} {Human: ENSG00000092208, GEMIN2, gem nuclear organelle associated protein 2, [RH, Score=89.4, Expect=1e-19]} {Mouse: ENSMUSG00000060121, Gemin2, gem nuclear organelle associated protein 2, [Score=104, Expect=4e-25]} {Celegans: WBGene00004886, smi-1, SMN (Survival of motor neuron) protein Interactor, [Score=60.5, Expect=3e-10]} {Smed: dd_Smed_v6_11175_0_4, dd_Smed_v6_11175_0_4, [Score=53.1, Expect=7e-08]} {RNA1509_43080} {RNA1310_28644, RNA1509_43080} {RNA1509_43080, RNA815_45784}
12. MligTC455_47013 2279 47.48 Mlig455_026791, Mlig455_051804

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.221

 SSSCA1 0.952 - - - - - 0.952

Mlig455_026791 {REF} {Length: 1046} {TRANSSPLICED} {Pfam: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) [PF06677.14, score=56.3]} {Human: ENSG00000173465, SSSCA1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=113, Expect=4e-31]} {Mouse: ENSMUSG00000079478, Sssca1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=112, Expect=1e-30]} {Celegans: WBGene00012643, Y39A1A.3, [RH, Score=50.1, Expect=1e-07]} {Smed: dd_Smed_v6_2060_0_1, dd_Smed_v6_2060_0_1, [RH, Score=82.8, Expect=3e-20]} {RNA1509_29657, RNA1509_39476} {RNA1310_30546, RNA1509_29657, RNA1509_39476} {RNA1509_29657, RNA1509_39476, RNA815_15417}

Mlig455_051804 {REF} {Length: 1044} {TRANSSPLICED} {Pfam: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) [PF06677.14, score=56.3]} {Human: ENSG00000173465, SSSCA1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=113, Expect=4e-31]} {Mouse: ENSMUSG00000079478, Sssca1, Sjogren syndrome/scleroderma autoantigen 1, [RH, Score=112, Expect=1e-30]} {Celegans: WBGene00012643, Y39A1A.3, [RH, Score=50.1, Expect=1e-07]} {Smed: dd_Smed_v6_2060_0_1, dd_Smed_v6_2060_0_1, [RH, Score=82.8, Expect=3e-20]} {RNA1509_14684, RNA1509_21618} {RNA1310_30546, RNA1509_14684, RNA1509_21618} {RNA1509_14684, RNA1509_21618, RNA815_15417}
13. MligTC455_49631 732 15.24 Mlig455_009459, Mlig455_009470

Neo: -

Age: Down-Up-Down

 0.952 - 0.952 - - - -

Mlig455_009459 {REF} {Length: 1159} {RNA1509_27374, RNA1509_44208} {RNA1310_16660, RNA1509_27374, RNA1509_44208} {RNA1509_27374, RNA1509_44208, RNA815_6771}

Mlig455_009470 {REF} {Length: 1158} {RNA1509_27374} {RNA1310_16660} {RNA815_6771}
14. MligTC455_31278 575 11.99 Mlig455_034265, Mlig455_067317

Neo: -

Age: -

 0.951 - - - 0.951 - -

Mlig455_034265 {REF} {Length: 3800} {TRANSSPLICED} {RNA1509_6961} {RNA1310_21901} {RNA815_16853}

Mlig455_067317 {REF} {Length: 2701} {RNA1509_25307} {RNA1310_32094.1} {RNA815_17424}
15. MligTC455_36921 1688 35.18 Mlig455_025773, Mlig455_064418

Neo: -

Age: -

Region-enriched R5: 1.081/0.00614

 PTDSS1 0.95 - - - - - 0.950

Mlig455_025773 {REF} {Length: 3227} {Pfam: Phosphatidyl serine synthase [PF03034.17, score=334.9]} {Human: ENSG00000156471, PTDSS1, phosphatidylserine synthase 1, [RH, Score=415, Expect=2e-141]} {Mouse: ENSMUSG00000021518, Ptdss1, phosphatidylserine synthase 1, [RH, Score=419, Expect=6e-143]} {Dmel: FBgn0037010, CG4825, [RH, Score=430, Expect=3e-147]} {Celegans: WBGene00013920, pssy-1, PhosphatidylSerine SYnthase, [RH, Score=399, Expect=5e-135]} {Smed: dd_Smed_v6_2855_0_1, dd_Smed_v6_2855_0_1, [RH, Score=522, Expect=0.0]} {RNA1509_5770} {RNA1310_323} {RNA815_5210.1}

Mlig455_064418 {REF} {Length: 2678} {TRANSSPLICED} {Pfam: Phosphatidyl serine synthase [PF03034.17, score=334.9]} {Human: ENSG00000156471, PTDSS1, phosphatidylserine synthase 1, [RH, Score=415, Expect=2e-141]} {Mouse: ENSMUSG00000021518, Ptdss1, phosphatidylserine synthase 1, [RH, Score=419, Expect=6e-143]} {Dmel: FBgn0037010, CG4825, [RH, Score=430, Expect=3e-147]} {Celegans: WBGene00013920, pssy-1, PhosphatidylSerine SYnthase, [RH, Score=399, Expect=5e-135]} {Smed: dd_Smed_v6_2855_0_1, dd_Smed_v6_2855_0_1, [RH, Score=522, Expect=0.0]} {RNA1509_5770} {RNA1310_323} {RNA815_5210.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA