M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46835

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46835 286 5.95 Mlig455_044319

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.222

 Mlig455_044319 {REF} {Length: 3046} {Pfam: Bacterial TSP3 repeat [PF18884.2, score=18.6]} {RNA1509_127} {RNA1310_66832} {RNA815_4383.4}

Cumulative graph for MligTC455_46835

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.306 3.016 0.99975 1.00000
RegionR2 1.622 3.016 0.21824 0.58627
RegionR3 -2.226 3.016 0.99986 1.00000
RegionR4 2.835 3.016 0.08564 0.27719
RegionR5 2.032 3.016 0.15230 0.40717
RegionR6 1.98 3.016 0.12330 0.64001
RegionR7 2.91 3.016 0.02903 0.32257
RegionR8 -2.846 3.016 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.791 3.016 0.99994 1.00000
RegenerationR2 2.65 3.016 0.00263 0.07756
RegenerationR3 4.668 3.016 0.00348 0.10476
RegenerationR4 3.021 3.016 0.01181 0.16659
RegenerationR5 2.954 3.016 0.00865 0.16828
RegenerationR6 2.149 3.016 0.07442 0.34107
RegenerationBL 2.479 3.016 0.11451 0.40003
RegenerationTP 2.409 3.016 0.28997 0.73518


Genes with expression patterns similar to MligTC455_46835

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46835 286 5.95 Mlig455_044319

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.222

 4 - - 1.000 1.000 1.000 1.000 Mlig455_044319 {REF} {Length: 3046} {Pfam: Bacterial TSP3 repeat [PF18884.2, score=18.6]} {RNA1509_127} {RNA1310_66832} {RNA815_4383.4}
2. MligTC455_45450 66 1.38 Mlig455_061622

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.869

 ZIC4 3.378 - - 0.955 0.740 0.880 0.803 Mlig455_061622 {REF} {Length: 1709} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=49.3]; Zinc-finger double domain [PF13465.8, score=44.8]; Zic proteins zinc finger domain [PF18366.3, score=30.5]} {Human: ENSG00000174963, ZIC4, Zic family member 4, [Score=201, Expect=5e-62]; ENSG00000156925, ZIC3, Zic family member 3, [Score=197, Expect=3e-59]; ENSG00000043355, ZIC2, Zic family member 2, [Score=197, Expect=2e-58]; ENSG00000152977, ZIC1, Zic family member 1, [Score=196, Expect=8e-59]; ENSG00000139800, ZIC5, Zic family member 5, [Score=194, Expect=1e-56]} {Mouse: ENSMUSG00000041703, Zic5, zinc finger protein of the cerebellum 5, [Score=199, Expect=9e-59]; ENSMUSG00000036972, Zic4, zinc finger protein of the cerebellum 4, [Score=197, Expect=9e-61]; ENSMUSG00000067860, Zic3, zinc finger protein of the cerebellum 3, [Score=197, Expect=2e-59]; ENSMUSG00000032368, Zic1, zinc finger protein of the cerebellum 1, [Score=196, Expect=5e-59]; ENSMUSG00000061524, Zic2, zinc finger protein of the cerebellum 2, [Score=196, Expect=1e-58]} {Dmel: FBgn0003002, opa, odd paired, [Score=194, Expect=5e-57]} {Celegans: WBGene00004335, ref-2, REgulator of Fusion, [Score=171, Expect=3e-51]} {Smed: dd_Smed_v6_15531_0_1, dd_Smed_v6_15531_0_1, [Score=214, Expect=4e-66]} {RNA1310_23362} {RNA815_19034}
3. MligTC455_41986 57 1.19 Mlig455_027306

Neo: -

Age: -

 TCF23 3.273 - - 0.967 0.763 0.830 0.713 Mlig455_027306 {REF} {Length: 1046} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=41.9]} {Human: ENSG00000163792, TCF23, transcription factor 23, [RH, Score=86.3, Expect=5e-22]} {Mouse: ENSMUSG00000006642, Tcf23, transcription factor 23, [RH, Score=84.3, Expect=2e-21]} {Dmel: FBgn0011277, HLH4C, Helix loop helix protein 4C, [Score=48.1, Expect=4e-08]} {Celegans: WBGene00001959, hlh-15, Helix Loop Helix, [Score=45.8, Expect=7e-08]} {Smed: dd_Smed_v6_16070_0_1, dd_Smed_v6_16070_0_1, [Score=52.4, Expect=9e-10]} {RNA1310_4676} {RNA815_18327.1}
4. MligTC455_10787 46 0.96 Mlig455_052810

Neo: -

Age: -

 2.754 - - 0.959 - 0.895 0.900 Mlig455_052810 {REF} {Length: 1287} {Pfam: F5/8 type C domain [PF00754.27, score=21.9]} {Smed: dd_Smed_v6_15258_0_1, dd_Smed_v6_15258_0_1, [RH, Score=56.2, Expect=2e-09]} {RNA1509_47815} {RNA1310_114361} {RNA815_11379}
5. MligTC455_46444 201 4.19 Mlig455_001021

Neo: -

Age: -

 1.847 - - 0.953 - - 0.894 Mlig455_001021 {REF} {Length: 629} {RNA1509_14730} {RNA1310_23260} {RNA815_18139}
6. MligTC455_49448 237 4.94 Mlig455_057665

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.549

 PRKCQ 1.815 - - 0.951 - 0.864 - Mlig455_057665 {REF} {Length: 2763} {Pfam: Protein kinase domain [PF00069.27, score=119.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=84.8]; Kinase-like [PF14531.8, score=23.9]} {Human: ENSG00000065675, PRKCQ, protein kinase C theta, [Score=90.1, Expect=1e-18]; ENSG00000067606, PRKCZ, protein kinase C zeta, [Score=89.4, Expect=2e-18]; ENSG00000281877, RPS6KA1, ribosomal protein S6 kinase A1, [Score=88.6, Expect=4e-18]; ENSG00000117676, RPS6KA1, ribosomal protein S6 kinase A1, [Score=88.6, Expect=4e-18]; ENSG00000163558, PRKCI, protein kinase C iota, [Score=88.2, Expect=5e-18]; ENSG00000108443, RPS6KB1, ribosomal protein S6 kinase B1, [Score=87.8, Expect=5e-18]; ENSG00000027075, PRKCH, protein kinase C eta, [Score=85.9, Expect=2e-17]; ENSG00000171132, PRKCE, protein kinase C epsilon, [Score=85.9, Expect=4e-17]} {Mouse: ENSMUSG00000029053, Prkcz, protein kinase C, zeta, [Score=88.6, Expect=3e-18]; ENSMUSG00000003644, Rps6ka1, ribosomal protein S6 kinase polypeptide 1, [Score=88.2, Expect=4e-18]; ENSMUSG00000021108, Prkch, protein kinase C, eta, [Score=87.8, Expect=5e-18]; ENSMUSG00000037643, Prkci, protein kinase C, iota, [Score=87.8, Expect=4e-18]; ENSMUSG00000020516, Rps6kb1, ribosomal protein S6 kinase, polypeptide 1, [Score=87.8, Expect=4e-18]; ENSMUSG00000031309, Rps6ka3, ribosomal protein S6 kinase polypeptide 3, [Score=87.4, Expect=7e-18]; ENSMUSG00000116203, Rps6ka6, ribosomal protein S6 kinase polypeptide 6, [Score=84.7, Expect=6e-17]; ENSMUSG00000045038, Prkce, protein kinase C, epsilon, [Score=84.7, Expect=6e-17]; ENSMUSG00000025665, Rps6ka6, ribosomal protein S6 kinase polypeptide 6, [Score=84.7, Expect=6e-17]; ENSMUSG00000026778, Prkcq, protein kinase C, theta, [Score=84.3, Expect=7e-17]; ENSMUSG00000019699, Akt3, thymoma viral proto-oncogene 3, [Score=84.3, Expect=4e-17]} {Dmel: FBgn0003093, Pkc98E, Protein C kinase 98E, [Score=86.7, Expect=7e-18]} {Celegans: WBGene00004032, pkc-1, Protein kinase C-like 1B, [Score=84.7, Expect=3e-17]} {Smed: dd_Smed_v6_8010_0_1, dd_Smed_v6_8010_0_1, [Score=88.2, Expect=2e-18]} {RNA1509_57646} {RNA1310_18713, RNA1509_57646} {RNA1509_57646, RNA815_7871}
7. MligTC455_52728 106 2.22 Mlig455_070290

Neo: -

Age: -

 1.798 - - - - 0.963 0.835 Mlig455_070290 {REF} {Length: 1652} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=55.7]; TcdA/TcdB catalytic glycosyltransferase domain [PF12919.9, score=18.2]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=128, Expect=4e-34]} {RNA1509_41314} {RNA1310_26265} {RNA815_9728}
8. MligTC455_38701 102 2.13 Mlig455_015653, Mlig455_023761

Neo: -

Age: -

 ANK1, FPGT-TNNI3K 1.696 - - - 0.733 0.963 -

Mlig455_015653 {REF} {Length: 5454} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=72.8]; Ankyrin repeats (many copies) [PF13857.8, score=71.0]; Ankyrin repeats (many copies) [PF13637.8, score=55.5]; Ankyrin repeat [PF00023.32, score=54.3]; Ankyrin repeat [PF13606.8, score=41.5]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=72.0, Expect=2e-15]; ENSG00000154065, ANKRD29, ankyrin repeat domain 29, [Score=70.1, Expect=3e-15]; ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=68.6, Expect=3e-14]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=74.7, Expect=1e-16]} {Dmel: FBgn0261554, CG42672, [Score=63.9, Expect=5e-13]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=67.8, Expect=2e-14]} {Smed: dd_Smed_v6_9936_0_1, dd_Smed_v6_9936_0_1, [Score=77.8, Expect=5e-18]} {RNA1509_28959} {RNA1310_10537} {RNA815_15195}

Mlig455_023761 {REF} {Length: 3109} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.7]; Ankyrin repeat [PF00023.32, score=65.6]; Ankyrin repeats (many copies) [PF13637.8, score=57.1]; Ankyrin repeat [PF13606.8, score=46.0]; Ankyrin repeats (many copies) [PF13857.8, score=45.3]; Mab-21 protein [PF03281.16, score=25.8]} {Human: ENSG00000259030, FPGT-TNNI3K, FPGT-TNNI3K readthrough, [Score=77.8, Expect=2e-14]; ENSG00000116783, TNNI3K, TNNI3 interacting kinase, [Score=77.4, Expect=3e-14]; ENSG00000029534, ANK1, ankyrin 1, [Score=75.9, Expect=1e-13]; ENSG00000151150, ANK3, ankyrin 3, [Score=75.1, Expect=2e-13]; ENSG00000085382, HACE1, HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1, [Score=74.7, Expect=2e-13]} {Mouse: ENSMUSG00000040086, Tnni3k, TNNI3 interacting kinase, [Score=82.4, Expect=5e-16]} {Dmel: FBgn0031473, CG3104, [Score=82.4, Expect=5e-17]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=74.7, Expect=8e-14]} {Smed: dd_Smed_v6_9936_0_1, dd_Smed_v6_9936_0_1, [Score=77.8, Expect=5e-15]} {RNA1509_26004} {RNA1310_3906.1} {RNA815_1664.1}
9. MligTC455_40626 37 0.76 Mlig455_066946

Neo: -

Age: -

Region-enriched R2: 4.441/0.03242

 CD209 0.974 - - 0.974 - - - Mlig455_066946 {REF} {Length: 1316} {Pfam: Lectin C-type domain [PF00059.23, score=25.9]} {Human: ENSG00000090659, CD209, CD209 molecule, [Score=48.1, Expect=6e-06]} {Mouse: ENSMUSG00000031495, Cd209d, CD209d antigen, [Score=46.2, Expect=1e-05]; ENSMUSG00000079168, Cd209g, CD209g antigen, [Score=45.4, Expect=1e-05]} {Dmel: FBgn0040096, lectin-33A, [Score=45.8, Expect=7e-06]} {Smed: dd_Smed_v6_42798_0_1, dd_Smed_v6_42798_0_1, [Score=60.1, Expect=9e-11]} {RNA1509_35402} {RNA1310_58025} {RNA815_61888}
10. MligTC455_16254 485 10.1 Mlig455_039657

Neo: -

Age: Up-Down-Down

 0.97 - - - - 0.970 - Mlig455_039657 {REF} {Length: 1117} {NoTransDecoderORF} {RNA1509_47868} {RNA1310_57969} {RNA815_28105}
11. MligTC455_32993 456 9.49 Mlig455_068821

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.033

Region-enriched R2: 2.892/0.00773
Region-enriched R3: 2.197/0.02773

 CFAP46 0.965 - - - - - 0.965 Mlig455_068821 {REF} {Length: 3199} {Human: ENSG00000171811, CFAP46, cilia and flagella associated protein 46, [Score=201, Expect=3e-52]} {Mouse: ENSMUSG00000049571, Cfap46, cilia and flagella associated protein 46, [Score=232, Expect=2e-62]} {Smed: dd_Smed_v6_14103_0_1, dd_Smed_v6_14103_0_1, [Score=238, Expect=6e-65]} {RNA1509_22612} {RNA1310_312.1} {RNA815_3411}
12. MligTC455_32992 490 10.21 Mlig455_038095, Mlig455_038097

Neo: -

Age: -

Region-enriched R2: 2.886/0.00584
Region-enriched R3: 2.133/0.03102

 CFAP46 0.961 - - - - - 0.961

Mlig455_038095 {REF} {Length: 9404} {Human: ENSG00000171811, CFAP46, cilia and flagella associated protein 46, [RH, Score=1014, Expect=0.0]} {Mouse: ENSMUSG00000049571, Cfap46, cilia and flagella associated protein 46, [RH, Score=742, Expect=0.0]} {Smed: dd_Smed_v6_14103_0_1, dd_Smed_v6_14103_0_1, [RH, Score=818, Expect=0.0]} {RNA1509_22612, RNA1509_24033} {RNA1310_152.1, RNA1509_24033} {RNA1509_24033, RNA815_852}

Mlig455_038097 {REF} {Length: 2124} {Pfam: WXXGXW repeat (2 copies) [PF12779.9, score=37.5]} {RNA1509_22612} {RNA1310_53889} {RNA815_852}
13. MligTC455_44635 298 6.21 Mlig455_066235

Neo: -

Age: -

 CCDC89 0.959 - - - - 0.959 - Mlig455_066235 {REF} {Length: 2245} {TRANSSPLICED} {Human: ENSG00000179071, CCDC89, coiled-coil domain containing 89, [RH, Score=121, Expect=1e-30]} {Mouse: ENSMUSG00000044362, Ccdc89, coiled-coil domain containing 89, [RH, Score=118, Expect=7e-30]} {Smed: dd_Smed_v6_41_2_1, dd_Smed_v6_41_2_1, [RH, Score=67.4, Expect=1e-13]} {RNA1509_12755, RNA1509_43101} {RNA1310_8733, RNA1509_12755, RNA1509_43101} {RNA1509_12755, RNA1509_43101, RNA815_8009.1}
14. MligTC455_52851 150 3.12 Mlig455_019167

Neo: -

Age: -

 IPP 0.958 - - 0.958 - - - Mlig455_019167 {REF} {Length: 4194} {Pfam: Kelch motif [PF13964.8, score=59.7]; BTB/POZ domain [PF00651.33, score=59.3]; Kelch motif [PF01344.27, score=43.5]; PB1 domain [PF00564.26, score=38.1]; BTB And C-terminal Kelch [PF07707.17, score=31.3]; Kelch motif [PF13854.8, score=29.1]; Galactose oxidase, central domain [PF13418.8, score=21.0]} {Human: ENSG00000197429, IPP, intracisternal A particle-promoted polypeptide, [Score=108, Expect=1e-23]} {Mouse: ENSMUSG00000028696, Ipp, IAP promoted placental gene, [Score=116, Expect=2e-26]} {Dmel: FBgn0034396, CG15097, [Score=101, Expect=1e-21]} {Celegans: WBGene00002184, kel-1, KELch-repeat containing protein; Kel-1 protein, [Score=94.0, Expect=2e-19]} {Smed: dd_Smed_v6_1751_0_1, dd_Smed_v6_1751_0_1, [Score=112, Expect=2e-25]} {RNA1509_34974} {RNA1310_11834, RNA1509_34974} {RNA1509_34974, RNA815_22708}
15. MligTC455_40479 354 7.37 Mlig455_047590

Neo: -

Age: -

 ABR 0.956 - - - 0.956 - - Mlig455_047590 {REF} {Length: 5506} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=132.9]; RhoGEF domain [PF00621.22, score=28.7]; PH domain [PF19057.2, score=25.6]} {Human: ENSG00000278741, ABR, ABR, RhoGEF and GTPase activating protein, [RH, Score=239, Expect=2e-65]; ENSG00000159842, ABR, ABR, RhoGEF and GTPase activating protein, [RH, Score=239, Expect=2e-65]; ENSG00000276016, ABR, ABR, RhoGEF and GTPase activating protein, [RH, Score=236, Expect=4e-65]} {Mouse: ENSMUSG00000017631, Abr, active BCR-related gene, [RH, Score=238, Expect=1e-65]; ENSMUSG00000009681, Bcr, breakpoint cluster region, [RH, Score=230, Expect=2e-61]} {Dmel: FBgn0025836, RhoGAP1A, Rho GTPase activating protein at 1A, [RH, Score=237, Expect=7e-64]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=111, Expect=1e-26]} {Smed: dd_Smed_v6_4507_0_1, dd_Smed_v6_4507_0_1, [RH, Score=205, Expect=2e-54]} {RNA1509_4804} {RNA1310_1844} {RNA815_541.1}
16. MligTC455_28328 90 1.88 Mlig455_005321, Mlig455_015449

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_005321 {REF} {Length: 698} {Pfam: Adenovirus endoprotease [PF00770.20, score=20.2]} {RNA1509_47487} {RNA1310_8325.1} {RNA815_24633}

Mlig455_015449 {REF} {Length: 3419} {Celegans: WBGene00016348, C33E10.6, [Score=79.0, Expect=6e-17]} {Smed: dd_Smed_v6_8128_0_8, dd_Smed_v6_8128_0_8, [Score=57.4, Expect=3e-10]} {RNA1509_8360} {RNA1310_576.1} {RNA815_1671.1}
17. MligTC455_13947 37 0.77 Mlig455_014397

Neo: -

Age: -

 CELSR3 0.953 - - 0.953 - - - Mlig455_014397 {REF} {Length: 3222} {Pfam: Cadherin domain [PF00028.19, score=131.3]} {Human: ENSG00000008300, CELSR3, cadherin EGF LAG seven-pass G-type receptor 3, [Score=158, Expect=1e-38]; ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=156, Expect=6e-38]; ENSG00000143126, CELSR2, cadherin EGF LAG seven-pass G-type receptor 2, [Score=154, Expect=1e-37]; ENSG00000075275, CELSR1, cadherin EGF LAG seven-pass G-type receptor 1, [Score=151, Expect=2e-36]} {Mouse: ENSMUSG00000016028, Celsr1, cadherin, EGF LAG seven-pass G-type receptor 1, [Score=161, Expect=1e-39]; ENSMUSG00000107269, Celsr3, cadherin, EGF LAG seven-pass G-type receptor 3, [Score=157, Expect=1e-38]; ENSMUSG00000023473, Celsr3, cadherin, EGF LAG seven-pass G-type receptor 3, [Score=157, Expect=1e-38]; ENSMUSG00000068740, Celsr2, cadherin, EGF LAG seven-pass G-type receptor 2, [Score=154, Expect=9e-38]} {Dmel: FBgn0038439, Cad89D, Cadherin 89D, [Score=168, Expect=4e-42]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=141, Expect=8e-34]} {Smed: dd_Smed_v6_13040_0_1, dd_Smed_v6_13040_0_1, [Score=115, Expect=5e-26]} {RNA1310_40769} {RNA815_46115}
18. MligTC455_50502 220 4.57 Mlig455_055106

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.948

 0.952 - - - - 0.952 - Mlig455_055106 {REF} {Length: 2136} {TRANSSPLICED} {Pfam: HMGL-like [PF00682.21, score=29.9]; EF-hand domain pair [PF13833.8, score=23.0]; EF hand [PF00036.34, score=19.2]} {RNA1509_52740} {RNA1310_12954.1} {RNA815_19505}
19. MligTC455_29790 999 20.81 Mlig455_006376

Neo: -

Age: Up-Down-Up

Region-enriched R4: 2.930/0.00650

 CRB2 0.95 - - - 0.950 - - Mlig455_006376 {REF} {Length: 5462} {TRANSSPLICED} {Pfam: EGF-like domain [PF00008.29, score=220.4]; Human growth factor-like EGF [PF12661.9, score=120.5]; Laminin G domain [PF02210.26, score=43.7]} {Human: ENSG00000148204, CRB2, crumbs 2, cell polarity complex component, [RH, Score=416, Expect=1e-123]} {Mouse: ENSMUSG00000035403, Crb2, crumbs family member 2, [Score=392, Expect=2e-114]} {Dmel: FBgn0259685, crb, crumbs, [RH, Score=508, Expect=4e-151]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=276, Expect=1e-74]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=298, Expect=1e-81]} {RNA1509_15021, RNA1509_35927} {RNA1310_9971, RNA1509_15021, RNA1509_35927} {RNA1509_15021, RNA1509_35927, RNA815_1035.1}
20. MligTC455_37675 88 1.84 Mlig455_032340

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_032340 {REF} {Length: 1387} {RNA1509_49109} {RNA1310_18706} {RNA815_131.1}
21. MligTC455_46445 169 3.51 Mlig455_065678

Neo: -

Age: Down-Down-Up

 0.95 - - 0.950 - - - Mlig455_065678 {REF} {Length: 599} {RNA1509_44880} {RNA1310_1166} {RNA815_18139}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA