M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47355

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47355 4977 103.69 Mlig455_008548

Neo: -

Age: -

Region-enriched R8: 2.148/0.00000
Region-enriched R7: 2.100/0.00000

 RCN3 Mlig455_008548 {REF} {Length: 1663} {Pfam: EF hand [PF00036.34, score=68.6]; EF-hand domain pair [PF13499.8, score=60.7]; EF hand [PF13202.8, score=45.1]; EF-hand domain [PF13405.8, score=44.6]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=27.7]; EF-hand domain pair [PF13833.8, score=26.1]} {Human: ENSG00000142552, RCN3, reticulocalbin 3, [Score=168, Expect=7e-49]; ENSG00000128595, CALU, calumenin, [Score=166, Expect=2e-48]; ENSG00000049449, RCN1, reticulocalbin 1, [Score=166, Expect=4e-48]} {Mouse: ENSMUSG00000019539, Rcn3, reticulocalbin 3, EF-hand calcium binding domain, [Score=168, Expect=5e-49]; ENSMUSG00000029767, Calu, calumenin, [Score=166, Expect=2e-48]; ENSMUSG00000005973, Rcn1, reticulocalbin 1, [Score=164, Expect=2e-47]} {Dmel: FBgn0025682, scf, supercoiling factor, [Score=171, Expect=3e-50]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [Score=166, Expect=7e-49]} {Smed: dd_Smed_v6_1417_0_1, dd_Smed_v6_1417_0_1, [Score=184, Expect=1e-55]} {RNA1509_12383} {RNA1310_2693.1, RNA1509_12383} {RNA1509_12383, RNA815_747.1}

Cumulative graph for MligTC455_47355

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.148 6.683 0.81835 1.00000
RegionR2 -1.172 6.683 0.00436 0.05878
RegionR3 0.709 6.683 0.02550 0.27276
RegionR4 -0.866 6.683 0.04054 0.16712
RegionR5 -1.77 6.683 0.00000 0.00012
RegionR6 -1.002 6.683 0.00679 0.13227
RegionR7 2.1 6.683 0.00000 0.00000
RegionR8 2.148 6.683 0.00000 0.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.401 6.683 0.61605 1.00000
RegenerationR2 0.861 6.683 0.04698 0.35755
RegenerationR3 0.718 6.683 0.09873 0.50200
RegenerationR4 1.119 6.683 0.01433 0.18751
RegenerationR5 1.333 6.683 0.00279 0.09323
RegenerationR6 1.011 6.683 0.02425 0.19384
RegenerationBL 0.159 6.683 0.66268 0.99705
RegenerationTP 0.162 6.683 0.67410 1.00000


Genes with expression patterns similar to MligTC455_47355

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47355 4977 103.69 Mlig455_008548

Neo: -

Age: -

Region-enriched R8: 2.148/0.00000
Region-enriched R7: 2.100/0.00000

 RCN3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_008548 {REF} {Length: 1663} {Pfam: EF hand [PF00036.34, score=68.6]; EF-hand domain pair [PF13499.8, score=60.7]; EF hand [PF13202.8, score=45.1]; EF-hand domain [PF13405.8, score=44.6]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=27.7]; EF-hand domain pair [PF13833.8, score=26.1]} {Human: ENSG00000142552, RCN3, reticulocalbin 3, [Score=168, Expect=7e-49]; ENSG00000128595, CALU, calumenin, [Score=166, Expect=2e-48]; ENSG00000049449, RCN1, reticulocalbin 1, [Score=166, Expect=4e-48]} {Mouse: ENSMUSG00000019539, Rcn3, reticulocalbin 3, EF-hand calcium binding domain, [Score=168, Expect=5e-49]; ENSMUSG00000029767, Calu, calumenin, [Score=166, Expect=2e-48]; ENSMUSG00000005973, Rcn1, reticulocalbin 1, [Score=164, Expect=2e-47]} {Dmel: FBgn0025682, scf, supercoiling factor, [Score=171, Expect=3e-50]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [Score=166, Expect=7e-49]} {Smed: dd_Smed_v6_1417_0_1, dd_Smed_v6_1417_0_1, [Score=184, Expect=1e-55]} {RNA1509_12383} {RNA1310_2693.1, RNA1509_12383} {RNA1509_12383, RNA815_747.1}
2. MligTC455_47354 2675 55.74 Mlig455_008518

Neo: -

Age: logFC(26M/2M)=0.599

Region-enriched R8: 2.131/0.00004
Region-enriched R7: 2.041/0.00000

 RCN3 5.274 0.972 0.861 0.790 0.762 0.969 0.920 Mlig455_008518 {REF} {Length: 2227} {Pfam: EF hand [PF00036.34, score=68.4]; EF-hand domain pair [PF13499.8, score=61.0]; EF-hand domain [PF13405.8, score=44.6]; EF hand [PF13202.8, score=43.1]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=26.0]; EF-hand domain pair [PF13833.8, score=25.2]} {Human: ENSG00000142552, RCN3, reticulocalbin 3, [Score=168, Expect=5e-49]; ENSG00000049449, RCN1, reticulocalbin 1, [Score=167, Expect=1e-48]; ENSG00000128595, CALU, calumenin, [Score=166, Expect=2e-48]} {Mouse: ENSMUSG00000019539, Rcn3, reticulocalbin 3, EF-hand calcium binding domain, [Score=168, Expect=4e-49]; ENSMUSG00000029767, Calu, calumenin, [Score=166, Expect=1e-48]; ENSMUSG00000005973, Rcn1, reticulocalbin 1, [Score=165, Expect=4e-48]} {Dmel: FBgn0025682, scf, supercoiling factor, [Score=169, Expect=1e-49]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [Score=166, Expect=6e-49]} {Smed: dd_Smed_v6_1417_0_1, dd_Smed_v6_1417_0_1, [Score=183, Expect=1e-55]} {RNA1509_12383} {RNA1310_2693.1} {RNA815_747.1}
3. MligTC455_47356 1519 31.65 Mlig455_018207

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.601

Region-enriched R7: 1.519/0.03644

 RCN1 4.101 0.759 0.756 0.757 - 0.950 0.879 Mlig455_018207 {REF} {Length: 2295} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=68.7]; EF-hand domain pair [PF13499.8, score=60.6]; EF-hand domain [PF13405.8, score=45.6]; EF hand [PF13202.8, score=45.4]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=29.6]; EF-hand domain pair [PF13833.8, score=25.8]} {Human: ENSG00000049449, RCN1, reticulocalbin 1, [Score=168, Expect=4e-49]; ENSG00000142552, RCN3, reticulocalbin 3, [Score=167, Expect=9e-49]; ENSG00000128595, CALU, calumenin, [Score=166, Expect=3e-48]} {Mouse: ENSMUSG00000019539, Rcn3, reticulocalbin 3, EF-hand calcium binding domain, [Score=167, Expect=6e-49]; ENSMUSG00000005973, Rcn1, reticulocalbin 1, [Score=167, Expect=1e-48]; ENSMUSG00000029767, Calu, calumenin, [Score=166, Expect=2e-48]} {Dmel: FBgn0025682, scf, supercoiling factor, [Score=169, Expect=9e-50]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [Score=165, Expect=2e-48]} {Smed: dd_Smed_v6_1417_0_1, dd_Smed_v6_1417_0_1, [Score=182, Expect=3e-55]} {RNA1509_12383, RNA1509_43918, RNA1509_5096} {RNA1310_2693.1, RNA1509_43918, RNA1509_5096} {RNA1509_43918, RNA1509_5096, RNA815_747.1}
4. MligTC455_21451 352 7.34 Mlig455_040118, Mlig455_067333

Neo: -

Age: -

Region-enriched R8: 6.038/0.00000
Region-enriched R7: 5.404/0.00000

 ANGPTL7 2.528 0.950 - - 0.729 0.849 -

Mlig455_040118 {REF} {Length: 1728} {tRNA: Val(CAC),pseudo, score=20.9} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=127.6]; PAN domain [PF00024.28, score=20.2]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=98.6, Expect=3e-23]; ENSG00000120332, TNN, tenascin N, [Score=98.2, Expect=2e-22]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=96.7, Expect=5e-22]; ENSG00000116147, TNR, tenascin R, [Score=96.7, Expect=8e-22]; ENSG00000160339, FCN2, ficolin 2, [Score=94.0, Expect=5e-22]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=97.8, Expect=2e-22]; ENSMUSG00000015829, Tnr, tenascin R, [Score=97.8, Expect=2e-22]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=95.9, Expect=5e-22]; ENSMUSG00000026938, Fcna, ficolin A, [Score=95.5, Expect=2e-22]; ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=94.0, Expect=8e-22]} {Dmel: FBgn0050280, CG30280, [Score=111, Expect=9e-29]} {Celegans: WBGene00020516, T15B7.1, [Score=68.2, Expect=6e-13]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=100, Expect=8e-24]} {RNA1509_58115} {RNA1310_32877} {RNA815_17241}

Mlig455_067333 {REF} {Length: 1595} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=128.2]; PAN domain [PF00024.28, score=20.3]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=99.8, Expect=1e-23]; ENSG00000120332, TNN, tenascin N, [Score=99.0, Expect=2e-22]; ENSG00000171564, FGB, fibrinogen beta chain, [Score=98.2, Expect=2e-22]; ENSG00000116147, TNR, tenascin R, [Score=97.1, Expect=7e-22]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=98.2, Expect=2e-22]; ENSMUSG00000026725, Tnn, tenascin N, [Score=97.8, Expect=3e-22]; ENSMUSG00000033831, Fgb, fibrinogen beta chain, [Score=97.4, Expect=2e-22]; ENSMUSG00000026938, Fcna, ficolin A, [Score=95.5, Expect=3e-22]; ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=94.4, Expect=6e-22]} {Dmel: FBgn0050280, CG30280, [Score=111, Expect=8e-29]} {Celegans: WBGene00020516, T15B7.1, [Score=68.6, Expect=6e-13]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=101, Expect=4e-24]} {RNA1509_58115} {RNA1310_32877} {RNA815_17241}
5. MligTC455_15983 668 13.92 Mlig455_018780, Mlig455_018950

Neo: -

Age: Up-Down-Down

Region-enriched R8: 4.299/0.00000
Region-enriched R7: 3.889/0.00000

 1.677 0.951 - 0.726 - - -

Mlig455_018780 {REF} {Length: 1496} {RNA1509_47436} {RNA1310_22809.1} {RNA815_49713}

Mlig455_018950 {REF} {Length: 1264} {RNA1509_47436} {RNA1310_22809.1, RNA1509_47436} {RNA1509_47436, RNA815_49713}
6. MligTC455_04420 209 4.36 Mlig455_005696

Neo: -

Age: -

Region-enriched R7: 3.482/0.00030
Region-enriched R8: 3.068/0.04709
Region-enriched R3: 2.252/0.02328

 0.959 0.959 - - - - - Mlig455_005696 {REF} {Length: 2113} {Pfam: Major Facilitator Superfamily [PF07690.18, score=68.2]; PUCC protein [PF03209.17, score=38.1]; MFS/sugar transport protein [PF13347.8, score=25.9]; MFS_1 like family [PF12832.9, score=24.5]} {Smed: dd_Smed_v6_8550_0_1, dd_Smed_v6_8550_0_1, [Score=388, Expect=2e-131]} {RNA1509_18256} {RNA1310_12968} {RNA815_5192}
7. MligTC455_16472 50 1.03 Mlig455_054024

Neo: -

Age: Down-Down-Up

Region-enriched R7: 4.212/0.02696

 0.956 - - - - 0.956 - Mlig455_054024 {REF} {Length: 2122} {Pfam: Innexin [PF00876.20, score=299.3]} {Dmel: FBgn0027108, Inx2, Innexin 2, [Score=89.0, Expect=2e-19]} {Celegans: WBGene00002135, inx-13, Innexin, [Score=257, Expect=3e-82]} {Smed: dd_Smed_v6_11077_0_1, dd_Smed_v6_11077_0_1, [Score=258, Expect=5e-82]} {RNA1310_61810}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA