M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_47428

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47428 11 0.24 Mlig455_042745

Neo: -

Age: -

 Mlig455_042745 {REF} {Length: 1016} {NoTransDecoderORF} {RNA1310_130213} {RNA815_33688}

Cumulative graph for MligTC455_47428

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.487 0.612 0.99973 1.00000
RegionR2 0.891 0.612 0.99988 1.00000
RegionR3 -1.702 0.612 1.00000 1.00000
RegionR4 -2.963 0.612 0.99967 1.00000
RegionR5 0.237 0.612 0.99984 1.00000
RegionR6 -1.777 0.612 1.00000 1.00000
RegionR7 0.601 0.612 0.99997 1.00000
RegionR8 6.2 0.612 0.99972 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.182 0.612 0.99991 1.00000
RegenerationR2 2.04 0.612 1.00000 1.00000
RegenerationR3 2.615 0.612 1.00000 1.00000
RegenerationR4 0.998 0.612 0.99965 1.00000
RegenerationR5 -2.832 0.612 0.99984 1.00000
RegenerationR6 -0.516 0.612 0.99991 1.00000
RegenerationBL -3.602 0.612 1.00000 1.00000
RegenerationTP -3.177 0.612 1.00000 1.00000


Genes with expression patterns similar to MligTC455_47428

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47428 11 0.24 Mlig455_042745

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_042745 {REF} {Length: 1016} {NoTransDecoderORF} {RNA1310_130213} {RNA815_33688}
2. MligTC455_46366 186 3.88 Mlig455_058774

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_058774 {REF} {Length: 1243} {NoTransDecoderORF} {RNA1509_27726} {RNA1310_29978} {RNA815_47137}
3. MligTC455_08795 29 0.6 Mlig455_005761

Neo: -

Age: Down-Up-Down

 0.972 - - - - 0.972 - Mlig455_005761 {REF} {Length: 855} {NoTransDecoderORF} {RNA1509_57252} {RNA1310_97275.1} {RNA815_50075}
4. MligTC455_07395 44 0.92 Mlig455_059338

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_059338 {REF} {Length: 8046} {Pfam: HEAT repeats [PF13646.8, score=28.2]}
5. MligTC455_45832 434 9.04 Mlig455_031218

Neo: -

Age: logFC(26M/2M)=-0.554

Regeneration-depleted BL: -8.141
Regeneration-depleted R5: -5.539
Regeneration-depleted R6: -4.514
Regeneration-depleted R4: -4.459
Regeneration-depleted R3: -3.400
Regeneration-depleted R2: -2.225

 CYP2J2 0.961 - - - - 0.961 - Mlig455_031218 {REF} {Length: 2567} {Pfam: Cytochrome P450 [PF00067.24, score=269.5]} {Human: ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=231, Expect=5e-69]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=231, Expect=4e-69]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=229, Expect=2e-68]; ENSMUSG00000027983, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=226, Expect=8e-67]; ENSMUSG00000116063, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=226, Expect=8e-67]} {Dmel: FBgn0036910, Cyp305a1, [Score=166, Expect=7e-45]} {Celegans: WBGene00012448, cyp-33D3, CYtochrome P450 family, [Score=208, Expect=9e-61]} {Smed: dd_Smed_v6_8600_0_1, dd_Smed_v6_8600_0_1, [Score=221, Expect=1e-65]} {RNA1509_10802} {RNA1310_15759, RNA1509_10802} {RNA1509_10802, RNA815_10494}
6. MligTC455_46613 57 1.18 Mlig455_057193

Neo: -

Age: -

 TNR 0.961 - - - - 0.961 - Mlig455_057193 {REF} {Length: 2096} {TRANSSPLICED} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=135.5]} {Human: ENSG00000116147, TNR, tenascin R, [Score=107, Expect=3e-25]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=102, Expect=1e-23]; ENSG00000085265, FCN1, ficolin 1, [Score=102, Expect=1e-24]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=108, Expect=4e-26]; ENSMUSG00000026725, Tnn, tenascin N, [Score=107, Expect=3e-25]} {Dmel: FBgn0003326, sca, scabrous, [Score=95.9, Expect=9e-22]} {Celegans: WBGene00017013, ensh-1, [Score=48.5, Expect=3e-06]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=89.0, Expect=1e-19]} {RNA1509_46373} {RNA1310_30846.1} {RNA815_24869}
7. MligTC455_22207 33 0.68 Mlig455_014911

Neo: -

Age: -

 ASIC1 0.96 - - - - 0.960 - Mlig455_014911 {REF} {Length: 2866} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=169.0]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=53.5, Expect=9e-07]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=53.1, Expect=1e-06]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=65.9, Expect=4e-11]} {Smed: dd_Smed_v6_16346_0_1, dd_Smed_v6_16346_0_1, [Score=111, Expect=2e-25]} {RNA1509_26567} {RNA1310_9266.1} {RNA815_6618}
8. MligTC455_12808 42 0.87 Mlig455_037582

Neo: -

Age: -

Region-enriched R4: 3.576/0.00003

 0.959 - - - - 0.959 - Mlig455_037582 {REF} {Length: 4205} {RNA1509_14533} {RNA1310_10263.1} {RNA815_2693.1}
9. MligTC455_55615 9 0.18 Mlig455_002937

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_002937 {REF} {Length: 373} {NoTransDecoderORF}
10. MligTC455_13373 13 0.26 Mlig455_052821

Neo: -

Age: -

 SLC7A8 0.955 - - - - 0.955 - Mlig455_052821 {REF} {Length: 1044} {Pfam: Amino acid permease [PF13520.8, score=61.2]; Amino acid permease [PF00324.23, score=27.8]} {Human: ENSG00000092068, SLC7A8, solute carrier family 7 member 8, [Score=134, Expect=5e-38]} {Mouse: ENSMUSG00000022180, Slc7a8, solute carrier family 7 (cationic amino acid transporter, y+ system), member 8, [Score=138, Expect=3e-38]} {Dmel: FBgn0039844, CG1607, [Score=147, Expect=5e-42]} {Celegans: WBGene00000002, aat-1, Amino Acid Transporter, [Score=128, Expect=5e-35]} {RNA1310_63369} {RNA815_34592}
11. MligTC455_15219 11 0.23 Mlig455_060084

Neo: -

Age: -

 GPRC6A 0.953 - - - - 0.953 - Mlig455_060084 {REF} {Length: 2631} {Pfam: Receptor family ligand binding region [PF01094.30, score=81.5]; 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=67.1]; Periplasmic binding protein [PF13458.8, score=20.1]} {Human: ENSG00000173612, GPRC6A, G protein-coupled receptor class C group 6 member A, [Score=85.5, Expect=2e-16]} {Mouse: ENSMUSG00000019905, Gprc6a, G protein-coupled receptor, family C, group 6, member A, [Score=86.3, Expect=8e-17]} {Dmel: FBgn0050361, mtt, mangetout, [Score=78.2, Expect=2e-14]} {Celegans: WBGene00003232, mgl-1, Probable metabotropic glutamate receptor mgl-1, [Score=57.4, Expect=3e-08]} {Smed: dd_Smed_v6_32826_0_1, dd_Smed_v6_32826_0_1, [Score=68.9, Expect=6e-12]} {RNA1310_116747}
12. MligTC455_39381 20 0.41 Mlig455_002242, Mlig455_010254, Mlig455_020895, Mlig455_022334, Mlig455_025586, Mlig455_028034, Mlig455_049206, Mlig455_054733, Mlig455_066851

Neo: -

Age: Up-Down-Down

 0.953 - - - - 0.953 -

Mlig455_002242 {REF} {Length: 2346} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.1}

Mlig455_010254 {REF} {Length: 1852} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=126.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.2}

Mlig455_020895 {REF} {Length: 2070} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=128.2]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.2}

Mlig455_022334 {REF} {Length: 2636} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.1}

Mlig455_025586 {REF} {Length: 3599} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}

Mlig455_028034 {REF} {Length: 3299} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}

Mlig455_049206 {REF} {Length: 2616} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.3]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.2}

Mlig455_054733 {REF} {Length: 460} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=76.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=75.3]; RNase H [PF00075.26, score=47.2]} {RNA1509_50041} {RNA1310_1659} {RNA815_252.1}

Mlig455_066851 {REF} {Length: 4119} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.8]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}
13. MligTC455_40067 143 2.98 Mlig455_069272

Neo: -

Age: Up-Down-Down

 DAGLA 0.952 - - - - 0.952 - Mlig455_069272 {REF} {Length: 3991} {Pfam: Lipase (class 3) [PF01764.27, score=33.2]} {Human: ENSG00000134780, DAGLA, diacylglycerol lipase alpha, [Score=207, Expect=7e-55]} {Mouse: ENSMUSG00000035735, Dagla, diacylglycerol lipase, alpha, [Score=207, Expect=7e-55]} {Dmel: FBgn0261244, inaE, inactivation no afterpotential E, [Score=237, Expect=3e-67]} {Celegans: WBGene00018364, dagl-2, DiAcylGlycerol Lipase homolog, [Score=63.9, Expect=4e-10]} {Smed: dd_Smed_v6_13306_0_4, dd_Smed_v6_13306_0_4, [Score=73.2, Expect=4e-13]} {RNA1509_34493} {RNA1310_7849} {RNA815_28888}
14. MligTC455_01420 20 0.41 Mlig455_030565

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_030565 {REF} {Length: 1528} {RNA1509_15264} {RNA1310_26288} {RNA815_11358}
15. MligTC455_13184 44 0.91 Mlig455_054845

Neo: -

Age: -

 TWIST1 0.95 - - - - 0.950 - Mlig455_054845 {REF} {Length: 1872} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=57.9]} {Human: ENSG00000122691, TWIST1, twist family bHLH transcription factor 1, [RH, Score=98.2, Expect=1e-24]; ENSG00000233608, TWIST2, twist family bHLH transcription factor 2, [RH, Score=96.7, Expect=2e-24]} {Mouse: ENSMUSG00000035799, Twist1, twist basic helix-loop-helix transcription factor 1, [RH, Score=98.2, Expect=9e-25]; ENSMUSG00000007805, Twist2, twist basic helix-loop-helix transcription factor 2, [RH, Score=96.7, Expect=1e-24]} {Dmel: FBgn0003900, twi, twist, [RH, Score=99.0, Expect=1e-23]} {Celegans: WBGene00001953, hlh-8, Twist-related protein, [RH, Score=70.5, Expect=7e-15]} {Smed: dd_Smed_v6_17951_0_1, dd_Smed_v6_17951_0_1, [RH, Score=102, Expect=3e-26]} {RNA1509_25363} {RNA1310_76449} {RNA815_49002}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA