M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48878

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48878 246 5.12 Mlig455_000110

Neo: Int S/G2/M

Age: Up-Down-Down

 HACD3 Mlig455_000110 {REF} {Length: 3358} {TRANSSPLICED} {Pfam: Protein tyrosine phosphatase-like protein, PTPLA [PF04387.16, score=155.6]; CS domain [PF04969.18, score=23.0]} {Human: ENSG00000074696, HACD3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=208, Expect=4e-63]} {Mouse: ENSMUSG00000033629, Hacd3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=212, Expect=2e-64]} {Dmel: FBgn0032524, CG9267, [RH, Score=228, Expect=1e-70]} {Celegans: WBGene00020517, hpo-8, Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8, [Score=94.7, Expect=3e-22]} {Smed: dd_Smed_v6_3998_0_1, dd_Smed_v6_3998_0_1, [RH, Score=287, Expect=2e-93]} {RNA1509_11453} {RNA1310_14107.1, RNA1509_11453} {RNA1509_11453, RNA815_10393}

Cumulative graph for MligTC455_48878

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.104 2.986 0.94637 1.00000
RegionR2 -0.114 2.986 0.88292 1.00000
RegionR3 -0.296 2.986 0.62277 1.00000
RegionR4 0.318 2.986 0.64363 0.94809
RegionR5 0.739 2.986 0.13513 0.37595
RegionR6 -0.902 2.986 0.16431 0.71885
RegionR7 -0.205 2.986 0.80895 1.00000
RegionR8 0.357 2.986 0.71684 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.758 2.986 0.27282 0.97554
RegenerationR2 0.407 2.986 0.52051 0.87938
RegenerationR3 -0.083 2.986 0.90472 1.00000
RegenerationR4 -0.318 2.986 0.64997 0.93352
RegenerationR5 -0.472 2.986 0.44575 0.82820
RegenerationR6 1.44 2.986 0.04475 0.26443
RegenerationBL 0.383 2.986 0.66369 0.99786
RegenerationTP -0.607 2.986 0.53767 0.92463


Genes with expression patterns similar to MligTC455_48878

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48878 246 5.12 Mlig455_000110

Neo: Int S/G2/M

Age: Up-Down-Down

 HACD3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_000110 {REF} {Length: 3358} {TRANSSPLICED} {Pfam: Protein tyrosine phosphatase-like protein, PTPLA [PF04387.16, score=155.6]; CS domain [PF04969.18, score=23.0]} {Human: ENSG00000074696, HACD3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=208, Expect=4e-63]} {Mouse: ENSMUSG00000033629, Hacd3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=212, Expect=2e-64]} {Dmel: FBgn0032524, CG9267, [RH, Score=228, Expect=1e-70]} {Celegans: WBGene00020517, hpo-8, Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8, [Score=94.7, Expect=3e-22]} {Smed: dd_Smed_v6_3998_0_1, dd_Smed_v6_3998_0_1, [RH, Score=287, Expect=2e-93]} {RNA1509_11453} {RNA1310_14107.1, RNA1509_11453} {RNA1509_11453, RNA815_10393}
2. MligTC455_40983 822 17.13 Mlig455_014763, Mlig455_014822

Neo: -

Age: -

 RPUSD2 1.708 - - - 0.963 0.745 -

Mlig455_014763 {REF} {Length: 1287} {TRANSSPLICED} {Pfam: RNA pseudouridylate synthase [PF00849.24, score=97.8]} {Human: ENSG00000166133, RPUSD2, RNA pseudouridylate synthase domain containing 2, [RH, Score=256, Expect=7e-81]} {Mouse: ENSMUSG00000027324, Rpusd2, RNA pseudouridylate synthase domain containing 2, [Score=266, Expect=5e-84]} {Dmel: FBgn0032256, RluA-2, [Score=269, Expect=2e-85]} {Celegans: WBGene00019498, K07E8.7, Pseudouridine synthase, [Score=187, Expect=5e-56]} {Smed: dd_Smed_v6_12745_0_4, dd_Smed_v6_12745_0_4, [Score=248, Expect=4e-78]} {RNA1509_50690} {RNA1310_18279} {RNA815_7747}

Mlig455_014822 {REF} {Length: 1626} {TRANSSPLICED} {Pfam: RNA pseudouridylate synthase [PF00849.24, score=95.1]} {Human: ENSG00000166133, RPUSD2, RNA pseudouridylate synthase domain containing 2, [RH, Score=302, Expect=2e-96]} {Mouse: ENSMUSG00000027324, Rpusd2, RNA pseudouridylate synthase domain containing 2, [RH, Score=314, Expect=5e-101]} {Dmel: FBgn0032256, RluA-2, [RH, Score=326, Expect=6e-106]} {Celegans: WBGene00019498, K07E8.7, Pseudouridine synthase, [RH, Score=220, Expect=2e-66]} {Smed: dd_Smed_v6_12745_0_4, dd_Smed_v6_12745_0_4, [RH, Score=286, Expect=2e-91]} {RNA1509_25865, RNA1509_32103} {RNA1310_18279, RNA1509_25865, RNA1509_32103} {RNA1509_25865, RNA1509_32103, RNA815_7747}
3. MligTC455_15548 196 4.09 Mlig455_042737

Neo: -

Age: -

 0.969 - - - 0.969 - - Mlig455_042737 {REF} {Length: 2401} {RNA1509_18134, RNA1509_57486} {RNA1310_8952.1, RNA1509_57486} {RNA1509_57486, RNA815_5638}
4. MligTC455_49454 980 20.42 Mlig455_019087

Neo: -

Age: logFC(26M/2M)=1.313

 0.966 - - - - 0.966 - Mlig455_019087 {REF} {Length: 609} {TRANSSPLICED} {RNA1509_10011} {RNA1310_52393} {RNA815_29898}
5. MligTC455_25124 192 4 Mlig455_028759

Neo: Irradiation

Age: -

 TRIM2 0.962 - - - 0.962 - - Mlig455_028759 {REF} {Length: 5021} {Pfam: NHL repeat [PF01436.23, score=39.3]; RING-type zinc-finger [PF13445.8, score=18.7]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=57.0, Expect=1e-07]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=58.2, Expect=4e-08]} {Dmel: FBgn0265356, tn, thin, [Score=52.0, Expect=2e-06]} {Celegans: WBGene00003559, ncl-1, B-box type zinc finger protein ncl-1, [Score=85.9, Expect=5e-17]} {RNA1509_23913} {RNA1310_10840} {RNA815_6531}
6. MligTC455_35998 1012 21.09 Mlig455_017147

Neo: -

Age: -

Regeneration-upregulated BL: 1.812

Regeneration-enriched BL: 1.812

 DOT1L 0.96 - - - - - 0.960 Mlig455_017147 {REF} {Length: 2954} {Pfam: Histone methylation protein DOT1 [PF08123.15, score=243.1]} {Human: ENSG00000104885, DOT1L, DOT1 like histone lysine methyltransferase, [RH, Score=371, Expect=1e-112]} {Mouse: ENSMUSG00000061589, Dot1l, DOT1-like, histone H3 methyltransferase (S. cerevisiae), [RH, Score=352, Expect=6e-106]} {Dmel: FBgn0264495, gpp, grappa, [RH, Score=342, Expect=5e-102]} {Celegans: WBGene00021474, dot-1.1, DOT1 histone methyltransferase family, [RH, Score=162, Expect=2e-41]} {Smed: dd_Smed_v6_4515_0_3, dd_Smed_v6_4515_0_3, [RH, Score=361, Expect=4e-115]} {RNA1509_3518} {RNA1310_219} {RNA815_1960}
7. MligTC455_50089 721 15.02 Mlig455_045304

Neo: -

Age: -

Region-enriched R4: 1.018/0.03690

 PEX19 0.953 - - - - 0.953 - Mlig455_045304 {REF} {Length: 2591} {TRANSSPLICED} {Pfam: Pex19 protein family [PF04614.14, score=110.8]} {Human: ENSG00000162735, PEX19, peroxisomal biogenesis factor 19, [RH, Score=85.9, Expect=2e-18]; ENSG00000258465, AL139011.2, novel protein, [RH, Score=85.1, Expect=3e-18]} {Mouse: ENSMUSG00000003464, Pex19, peroxisomal biogenesis factor 19, [RH, Score=82.8, Expect=2e-17]} {Dmel: FBgn0032407, Pex19, Peroxin 19, [RH, Score=65.9, Expect=7e-12]} {Celegans: WBGene00004201, prx-19, Putative peroxisomal biogenesis factor 19, [RH, Score=82.0, Expect=1e-17]} {RNA1509_17689, RNA1509_18112, RNA1509_24903, RNA1509_37568} {RNA1310_14824, RNA1509_17689, RNA1509_24903, RNA1509_37568} {RNA1509_17689, RNA1509_24903, RNA1509_37568, RNA815_10570}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA