TomoSeq data search

Data search

Results for MligTC455_48937

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_48937

171

3.57

Mlig455_053773

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.317

Region-enriched R5: 1.757/0.04879

TRMT61A

Mlig455_053773 {REF} {Length: 1438} {TRANSSPLICED} {Pfam: tRNA methyltransferase complex GCD14 subunit [PF08704.12, score=226.5]; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) [PF01135.21, score=26.1]; Methyltransferase domain [PF13649.8, score=24.5]; Methyltransferase domain [PF08241.14, score=22.0]} {Human: ENSG00000166166, TRMT61A, tRNA methyltransferase 61A, [RH, Score=202, Expect=6e-63]} {Mouse: ENSMUSG00000060950, Trmt61a, tRNA methyltransferase 61A, [RH, Score=197, Expect=4e-61]} {Dmel: FBgn0039407, CG14544, [RH, Score=197, Expect=7e-61]} {Celegans: WBGene00012192, W02A11.1, tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A, [RH, Score=153, Expect=5e-44]} {Smed: dd_Smed_v6_8826_0_1, dd_Smed_v6_8826_0_1, [RH, Score=229, Expect=1e-73]} {RNA1509_24063, RNA1509_50978} {RNA1310_27539, RNA1509_24063, RNA1509_50978} {RNA1509_24063, RNA1509_50978, RNA815_27226.1}

Cumulative graph for MligTC455_48937

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-7.694	2.615	0.02995	0.44500
RegionR2	1.312	2.615	0.24542	0.62211
RegionR3	1.359	2.615	0.09738	0.54775
RegionR4	-0.189	2.615	0.90950	1.00000
RegionR5	1.757	2.615	0.00793	0.04879
RegionR6	1.626	2.615	0.04393	0.39242
RegionR7	0.737	2.615	0.53237	1.00000
RegionR8	1.093	2.615	0.42283	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	3.002	2.615	1.00000	1.00000
RegenerationR2	0	2.615	0.98328	1.00000
RegenerationR3	-0.305	2.615	0.66351	0.93448
RegenerationR4	0.324	2.615	0.61387	0.91843
RegenerationR5	-0.693	2.615	0.21896	0.65356
RegenerationR6	0.691	2.615	0.27317	0.62291
RegenerationBL	2.065	2.615	0.00651	0.07806
RegenerationTP	-1.19	2.615	0.39784	0.82766

Genes with expression patterns similar to MligTC455_48937

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_48937	171	3.57	Mlig455_053773	Neo: Int S/G2/M Age: logFC(26M/2M)=0.317 Region-enriched R5: 1.757/0.04879	TRMT61A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_053773 {REF} {Length: 1438} {TRANSSPLICED} {Pfam: tRNA methyltransferase complex GCD14 subunit [PF08704.12, score=226.5]; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) [PF01135.21, score=26.1]; Methyltransferase domain [PF13649.8, score=24.5]; Methyltransferase domain [PF08241.14, score=22.0]} {Human: ENSG00000166166, TRMT61A, tRNA methyltransferase 61A, [RH, Score=202, Expect=6e-63]} {Mouse: ENSMUSG00000060950, Trmt61a, tRNA methyltransferase 61A, [RH, Score=197, Expect=4e-61]} {Dmel: FBgn0039407, CG14544, [RH, Score=197, Expect=7e-61]} {Celegans: WBGene00012192, W02A11.1, tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A, [RH, Score=153, Expect=5e-44]} {Smed: dd_Smed_v6_8826_0_1, dd_Smed_v6_8826_0_1, [RH, Score=229, Expect=1e-73]} {RNA1509_24063, RNA1509_50978} {RNA1310_27539, RNA1509_24063, RNA1509_50978} {RNA1509_24063, RNA1509_50978, RNA815_27226.1}
2.	MligTC455_47628	18	0.37	Mlig455_070247	Neo: - Age: -		0.955	-	-	-	-	0.955	-	Mlig455_070247 {REF} {Length: 1586} {TRANSSPLICED} {Pfam: DDE superfamily endonuclease [PF13359.8, score=84.7]; Plant transposon protein [PF04827.16, score=39.4]} {RNA1509_49619} {RNA1310_9836} {RNA815_16395}
3.	MligTC455_16228	46	0.96	Mlig455_002978	Neo: Irradiation Age: Down-Up-Down		0.952	-	-	-	-	0.952	-	Mlig455_002978 {REF} {Length: 1440} {NoTransDecoderORF} {RNA1509_22773} {RNA1310_2370} {RNA815_11138}
4.	MligTC455_13505	132	2.74	Mlig455_027944	Neo: - Age: Up-Down-Down	KCND2	0.951	-	-	-	-	0.951	-	Mlig455_027944 {REF} {Length: 4404} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=127.7]; BTB/POZ domain [PF02214.24, score=91.1]; Ion channel [PF07885.18, score=49.3]; Shal-type voltage-gated potassium channels, N-terminal [PF11601.10, score=48.9]; Domain of unknown function (DUF3399) [PF11879.10, score=43.6]; BTB/POZ domain [PF16017.7, score=28.0]} {Human: ENSG00000184408, KCND2, potassium voltage-gated channel subfamily D member 2, [RH, Score=719, Expect=0.0]; ENSG00000171385, KCND3, potassium voltage-gated channel subfamily D member 3, [RH, Score=711, Expect=0.0]; ENSG00000102057, KCND1, potassium voltage-gated channel subfamily D member 1, [RH, Score=691, Expect=0.0]} {Mouse: ENSMUSG00000060882, Kcnd2, potassium voltage-gated channel, Shal-related family, member 2, [RH, Score=716, Expect=0.0]; ENSMUSG00000040896, Kcnd3, potassium voltage-gated channel, Shal-related family, member 3, [RH, Score=712, Expect=0.0]; ENSMUSG00000009731, Kcnd1, potassium voltage-gated channel, Shal-related family, member 1, [RH, Score=694, Expect=0.0]} {Dmel: FBgn0005564, Shal, Shaker cognate l, [RH, Score=747, Expect=0.0]} {Celegans: WBGene00022240, shl-1, SHaL family of potassium channels, [RH, Score=712, Expect=0.0]} {Smed: dd_Smed_v6_15876_0_1, dd_Smed_v6_15876_0_1, [RH, Score=716, Expect=0.0]} {RNA1509_23965} {RNA1310_7319} {RNA815_9248}
5.	MligTC455_45519	148	3.08	Mlig455_011435, Mlig455_061176	Neo: - Age: -		0.951	-	-	-	-	0.951	-	Mlig455_011435 {REF} {Length: 2322} {RNA1310_38993} {RNA815_43660} Mlig455_061176 {REF} {Length: 3147} {RNA1509_51062} {RNA1310_38993} {RNA815_43660}
6.	MligTC455_30528	74	1.55	Mlig455_034118	Neo: Irradiation Age: Down-Up-Up, logFC(26M/2M)=0.568 Region-enriched R5: 3.113/0.00719		0.95	-	-	0.950	-	-	-	Mlig455_034118 {REF} {Length: 1089} {TRANSSPLICED} {RNA1509_32285, RNA1509_51950} {RNA1310_31245, RNA1509_32285, RNA1509_51950} {RNA1509_32285, RNA1509_51950, RNA815_15266}

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