TomoSeq data search

Data search

Results for MligTC455_16228

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16228

46

0.96

Mlig455_002978

Neo: Irradiation

Age: Down-Up-Down

Mlig455_002978 {REF} {Length: 1440} {NoTransDecoderORF} {RNA1509_22773} {RNA1310_2370} {RNA815_11138}

Cumulative graph for MligTC455_16228

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.064	1.211	0.99970	1.00000
RegionR2	1.787	1.211	0.21555	0.58211
RegionR3	-0.175	1.211	0.99973	1.00000
RegionR4	-0.016	1.211	0.99970	1.00000
RegionR5	1.169	1.211	0.35426	0.70468
RegionR6	1.745	1.211	0.17614	0.73773
RegionR7	-1.225	1.211	0.99972	1.00000
RegionR8	-1.223	1.211	0.99972	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.586	1.211	0.99999	1.00000
RegenerationR2	0.575	1.211	0.56635	0.90107
RegenerationR3	2.839	1.211	0.07457	0.45557
RegenerationR4	2.356	1.211	0.05368	0.37234
RegenerationR5	2.073	1.211	0.09726	0.47686
RegenerationR6	1.729	1.211	0.19312	0.53200
RegenerationBL	4.384	1.211	0.02142	0.15889
RegenerationTP	-0.489	1.211	0.99996	1.00000

Genes with expression patterns similar to MligTC455_16228

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16228	46	0.96	Mlig455_002978	Neo: Irradiation Age: Down-Up-Down		3	-	-	-	1.000	1.000	1.000	Mlig455_002978 {REF} {Length: 1440} {NoTransDecoderORF} {RNA1509_22773} {RNA1310_2370} {RNA815_11138}
2.	MligTC455_32579	511	10.64	Mlig455_036736	Neo: - Age: -	PTPN11	0.972	-	-	-	-	0.972	-	Mlig455_036736 {REF} {Length: 4916} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=232.7]; SH2 domain [PF00017.26, score=139.8]; SH2 domain [PF14633.8, score=28.4]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=22.2]; Tyrosine phosphatase family [PF13350.8, score=19.2]} {Human: ENSG00000179295, PTPN11, protein tyrosine phosphatase, non-receptor type 11, [RH, Score=491, Expect=6e-167]} {Mouse: ENSMUSG00000043733, Ptpn11, protein tyrosine phosphatase, non-receptor type 11, [RH, Score=491, Expect=9e-167]} {Dmel: FBgn0000382, csw, corkscrew, [RH, Score=304, Expect=3e-92]} {Celegans: WBGene00004214, ptp-2, Tyrosine-protein phosphatase non-receptor type ptp-2, [Score=302, Expect=4e-93]} {Smed: dd_Smed_v6_5785_0_1, dd_Smed_v6_5785_0_1, [RH, Score=457, Expect=1e-153]} {RNA1509_54357, RNA1509_7971} {RNA1310_26359, RNA1509_54357} {RNA1509_54357, RNA815_4691.1}
3.	MligTC455_19953	78	1.62	Mlig455_016703	Neo: - Age: -		0.97	-	-	-	-	0.970	-	Mlig455_016703 {REF} {Length: 1066} {NoTransDecoderORF} {RNA1509_46750} {RNA1310_24904, RNA1509_46750} {RNA1509_46750, RNA815_55849}
4.	MligTC455_50475	165	3.43	Mlig455_022326	Neo: - Age: - Regeneration-downregulated R4: -4.258 Regeneration-depleted R4: -4.258	RNF25	0.968	-	-	-	-	-	0.968	Mlig455_022326 {REF} {Length: 2107} {TRANSSPLICED} {Pfam: RWD domain [PF05773.24, score=56.4]; RING-like zinc finger [PF17123.7, score=33.6]; Ring finger domain [PF13639.8, score=29.6]; RING-type zinc-finger [PF13445.8, score=25.5]; zinc-RING finger domain [PF14634.8, score=21.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=20.6]} {Human: ENSG00000163481, RNF25, ring finger protein 25, [RH, Score=119, Expect=7e-29]} {Mouse: ENSMUSG00000026171, Rnf25, ring finger protein 25, [RH, Score=125, Expect=3e-31]} {Dmel: FBgn0033884, CG13344, [RH, Score=91.3, Expect=9e-20]} {Celegans: WBGene00021812, Y53G8AR.5, [RH, Score=54.7, Expect=5e-08]} {RNA1509_6393} {RNA1310_12987} {RNA815_3992.1}
5.	MligTC455_10559	320	6.66	Mlig455_019715	Neo: - Age: Up-Down-Down Region-enriched R3: 1.395/0.04148	MBNL2	0.964	-	-	-	-	0.964	-	Mlig455_019715 {REF} {Length: 4993} {Pfam: Mediator complex subunit 3 fungal [PF11593.10, score=18.4]} {Human: ENSG00000139793, MBNL2, muscleblind like splicing regulator 2, [RH, Score=141, Expect=2e-37]; ENSG00000152601, MBNL1, muscleblind like splicing regulator 1, [RH, Score=136, Expect=1e-35]; ENSG00000076770, MBNL3, muscleblind like splicing regulator 3, [RH, Score=136, Expect=8e-36]} {Mouse: ENSMUSG00000022139, Mbnl2, muscleblind like splicing factor 2, [RH, Score=142, Expect=4e-38]; ENSMUSG00000036109, Mbnl3, muscleblind like splicing factor 3, [RH, Score=140, Expect=1e-37]; ENSMUSG00000027763, Mbnl1, muscleblind like splicing factor 1, [RH, Score=139, Expect=1e-36]} {Dmel: FBgn0265487, mbl, muscleblind, [RH, Score=165, Expect=4e-44]} {Celegans: WBGene00019347, mbl-1, Muscleblind-like protein, [RH, Score=147, Expect=1e-40]} {Smed: dd_Smed_v6_17985_0_1, dd_Smed_v6_17985_0_1, [RH, Score=166, Expect=1e-48]} {RNA1509_35686} {RNA1310_32205} {RNA815_16130.1}
6.	MligTC455_38384	60	1.24	Mlig455_064432	Neo: - Age: logFC(26M/2M)=0.449	LAMA5	0.957	-	-	-	-	0.957	-	Mlig455_064432 {REF} {Length: 9825} {Pfam: Laminin EGF domain [PF00053.26, score=214.1]; Laminin G domain [PF02210.26, score=112.6]; Laminin G domain [PF00054.25, score=104.3]; Integrase zinc binding domain [PF17921.3, score=48.6]; Laminin B (Domain IV) [PF00052.20, score=27.2]} {Human: ENSG00000130702, LAMA5, laminin subunit alpha 5, [Score=456, Expect=4e-128]} {Mouse: ENSMUSG00000015647, Lama5, laminin, alpha 5, [Score=461, Expect=5e-130]} {Dmel: FBgn0002526, LanA, Laminin A, [Score=526, Expect=6e-150]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=497, Expect=3e-141]} {Smed: dd_Smed_v6_7359_0_1, dd_Smed_v6_7359_0_1, [Score=290, Expect=1e-78]} {RNA1509_9236} {RNA1310_1265} {RNA815_12425}
7.	MligTC455_45818	312	6.51	Mlig455_009757, Mlig455_070114	Neo: - Age: -	SCML2	0.957	-	-	-	-	0.957	-	Mlig455_009757 {REF} {Length: 2536} {Pfam: mbt repeat [PF02820.20, score=136.4]; SAM domain (Sterile alpha motif) [PF00536.32, score=25.7]} {Human: ENSG00000102098, SCML2, Scm polycomb group protein like 2, [RH, Score=264, Expect=2e-80]} {Mouse: ENSMUSG00000000037, Scml2, Scm polycomb group protein like 2, [RH, Score=258, Expect=3e-77]} {Dmel: FBgn0003334, Scm, Sex comb on midleg, [RH, Score=242, Expect=2e-71]} {Celegans: WBGene00003041, lin-61, [RH, Score=90.1, Expect=4e-19]} {Smed: dd_Smed_v6_10208_0_2, dd_Smed_v6_10208_0_2, [RH, Score=176, Expect=4e-49]} {RNA1509_29967} {RNA1310_17057.1, RNA1509_29967} {RNA1509_29967, RNA815_24997} Mlig455_070114 {REF} {Length: 4024} {Pfam: mbt repeat [PF02820.20, score=138.3]; SAM domain (Sterile alpha motif) [PF00536.32, score=25.7]} {Human: ENSG00000102098, SCML2, Scm polycomb group protein like 2, [RH, Score=266, Expect=3e-81]} {Mouse: ENSMUSG00000000037, Scml2, Scm polycomb group protein like 2, [RH, Score=257, Expect=4e-77]} {Dmel: FBgn0003334, Scm, Sex comb on midleg, [RH, Score=244, Expect=5e-72]} {Celegans: WBGene00003041, lin-61, [RH, Score=92.0, Expect=9e-20]} {Smed: dd_Smed_v6_10208_0_2, dd_Smed_v6_10208_0_2, [RH, Score=177, Expect=9e-50]} {RNA1509_29967} {RNA1310_17057.1} {RNA815_24997}
8.	MligTC455_48937	171	3.57	Mlig455_053773	Neo: Int S/G2/M Age: logFC(26M/2M)=0.317 Region-enriched R5: 1.757/0.04879	TRMT61A	0.952	-	-	-	-	0.952	-	Mlig455_053773 {REF} {Length: 1438} {TRANSSPLICED} {Pfam: tRNA methyltransferase complex GCD14 subunit [PF08704.12, score=226.5]; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) [PF01135.21, score=26.1]; Methyltransferase domain [PF13649.8, score=24.5]; Methyltransferase domain [PF08241.14, score=22.0]} {Human: ENSG00000166166, TRMT61A, tRNA methyltransferase 61A, [RH, Score=202, Expect=6e-63]} {Mouse: ENSMUSG00000060950, Trmt61a, tRNA methyltransferase 61A, [RH, Score=197, Expect=4e-61]} {Dmel: FBgn0039407, CG14544, [RH, Score=197, Expect=7e-61]} {Celegans: WBGene00012192, W02A11.1, tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A, [RH, Score=153, Expect=5e-44]} {Smed: dd_Smed_v6_8826_0_1, dd_Smed_v6_8826_0_1, [RH, Score=229, Expect=1e-73]} {RNA1509_24063, RNA1509_50978} {RNA1310_27539, RNA1509_24063, RNA1509_50978} {RNA1509_24063, RNA1509_50978, RNA815_27226.1}

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